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Genomes and Genes | developmental gene expression regulationSummarySummary: Any of the processes by which nuclear, cytoplasmic, or intercellular factors influence the differential control of gene action during the developmental stages of an organism. Top Publications
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Publications
Smoothened mutants reveal redundant roles for Shh and Ihh signaling including regulation of L/R symmetry by the mouse nodeX M Zhang
Department of Molecular and Cellular Biology, The Biolabs, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
Cell 106:781-92. 2001..Further, we demonstrate an absolute requirement for Hedgehog signaling in sclerotomal development and a role in cardiac morphogenesis...
Conversion of cerebral cortex into basal ganglia in Emx2(-/-) Pax6(Sey/Sey) double-mutant miceLuca Muzio
Department of Biological and Technological Research (DIBIT, Istituto Scientifico H. San Raffaele, Via Olgettina 58, 20132 Milan, Italy
Nat Neurosci 5:737-45. 2002....
Expression of NK2 homologous transcripts during zebrafish developmentJ Wanga
Department of Biology, Howard University, Washington, DC 20059, USA
J Submicrosc Cytol Pathol 34:233-9. 2002..By 72 hpf, NK2 transcripts appeared in the jaw bones, pharyngeal arches, the cranium with minimal expression in striated muscle...
Ectopic Pax6 expression disturbs lens fiber cell differentiationMelinda K Duncan
Department of Biological Sciences, University of Delaware, Newark, Delaware, USA
Invest Ophthalmol Vis Sci 45:3589-98. 2004..This study is to test the hypothesis that normal fiber cell differentiation would be perturbed by sustained Pax6 expression...
Transcriptional activation by extradenticle in the Drosophila visceral mesodermBrian G Stultz
Cellular and Tissue Therapy Branch, Center for Biologics Evaluation and Research, Food and Drug Administration, HFM 730, Bldg 29B, Rm 1E16, 8800 Rockville Pike, Bethesda, MD 20892, USA
Dev Biol 290:482-94. 2006..We demonstrate that nuclear EXD is more extensively phosphorylated than the cytoplasmic form, suggesting that EXD is a target of signal transduction by protein kinases...
Genome-wide maps of chromatin state in pluripotent and lineage-committed cellsTarjei S Mikkelsen
Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
Nature 448:553-60. 2007..This study provides a framework for the application of comprehensive chromatin profiling towards characterization of diverse mammalian cell populations...
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAsJohn L Rinn
Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA 94305, USA
Cell 129:1311-23. 2007..Thus, transcription of ncRNA may demarcate chromosomal domains of gene silencing at a distance; these results have broad implications for gene regulation in development and disease states...
A bivalent chromatin structure marks key developmental genes in embryonic stem cellsBradley E Bernstein
Molecular Pathology Unit and Center for Cancer Research, Massachusetts General Hospital, Charlestown, MA 02129, USA
Cell 125:315-26. 2006..These results highlight the importance of DNA sequence in defining the initial epigenetic landscape and suggest a novel chromatin-based mechanism for maintaining pluripotency...
Genome-wide identification and testing of superior reference genes for transcript normalization in ArabidopsisTomasz Czechowski
Max-Planck Institute of Molecular Plant Physiology, Potsdam, Germany
Plant Physiol 139:5-17. 2005..The developed PCR primers or hybridization probes for the novel reference genes will enable better normalization and quantification of transcript levels in Arabidopsis in the future...
DNA methylation patterns and epigenetic memoryAdrian Bird
Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, UK
Genes Dev 16:6-21. 2002
Wnt/beta-catenin signaling in development and diseaseHans Clevers
Hubrecht Laboratory and Utrecht University, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands
Cell 127:469-80. 2006..Germline mutations in the Wnt pathway cause several hereditary diseases, and somatic mutations are associated with cancer of the intestine and a variety of other tissues...
Core transcriptional regulatory circuitry in human embryonic stem cellsLaurie A Boyer
Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, Massachusetts 02142, USA
Cell 122:947-56. 2005..These results provide new insights into the transcriptional regulation of stem cells and reveal how OCT4, SOX2, and NANOG contribute to pluripotency and self-renewal...
RAS is regulated by the let-7 microRNA familySteven M Johnson
Department of Molecular, Cellular and Developmental Biology, Yale University, P O Box 208103, New Haven, CT 06520, USA
Cell 120:635-47. 2005..let-7 expression is lower in lung tumors than in normal lung tissue, while RAS protein is significantly higher in lung tumors, providing a possible mechanism for let-7 in cancer...
Prediction of plant microRNA targetsMatthew W Rhoades
Whitehead Institute for Biomedical Research, 9 Cambridge Center, MA 02142, USA
Cell 110:513-20. 2002..The targeting of developmental transcription factors suggests that many plant miRNAs function during cellular differentiation to clear key regulatory transcripts from daughter cell lineages...
Sex determination involves synergistic action of SRY and SF1 on a specific Sox9 enhancerRyohei Sekido
Division of Developmental Genetics, MRC National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK
Nature 453:930-4. 2008..Our results open up the field, permitting further characterization of the molecular mechanisms regulating sex determination and how they have evolved, as well as how they fail in cases of sex reversal...
The transcription factor snail controls epithelial-mesenchymal transitions by repressing E-cadherin expressionA Cano
Instituto de Investigaciones Biomedicas, Arturo Duperier 4, 28029 Madrid, Spain
Nat Cell Biol 2:76-83. 2000..Snail may thus be considered as a marker for malignancy, opening up new avenues for the design of specific anti-invasive drugs...
A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNAG Hutvagner
Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01655, USA
Science 293:834-8. 2001..Thus, the RNA interference and stRNA pathways intersect. Both pathways require the RNA-processing enzyme Dicer to produce the active small-RNA component that represses gene expression...
Modification of gene activity in mouse embryos in utero by a tamoxifen-inducible form of Cre recombinaseP S Danielian
Department of Molecular and Cellular Biology Harvard University 16 Divinity Avenue, Cambridge Massachusetts 02138 USA
Curr Biol 8:1323-6. 1998..Induction was ligand dependent, rapid and efficient. The results demonstrate that tamoxifen-inducible recombination can be used to effectively modify gene function in the mouse embryo...
Identification of novel genes coding for small expressed RNAsM Lagos-Quintana
Department of Cellular Biochemistry, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, , Germany
Science 294:853-8. 2001..This suggests that sequence-specific, posttranscriptional regulatory mechanisms mediated by small RNAs are more general than previously appreciated...
Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegansColeen T Murphy
Department of Biochemistry and Biophysics, University of California, San Francisco, California 94143-2200, USA
Nature 424:277-83. 2003....
Targeted disruption of Cbfa1 results in a complete lack of bone formation owing to maturational arrest of osteoblastsT Komori
Department of Medicine III, Osaka University Medical School, Suita, Japan
Cell 89:755-64. 1997....
Control of developmental regulators by Polycomb in human embryonic stem cellsTong Ihn Lee
Whitehead Institute for Biomedical Research, 9 Cambridge Center, Cambridge, MA 02142, USA
Cell 125:301-13. 2006..These results indicate that PRC2 occupies a special set of developmental genes in ES cells that must be repressed to maintain pluripotency and that are poised for activation during ES cell differentiation...
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservationEmily E Hare
Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, California, United States of America
PLoS Genet 4:e1000106. 2008..Together, these observations suggest that the local arrangement of binding sites relative to each other is more important than their overall arrangement into larger units of cis-regulatory function...
Various spatiotemporal expression profiles of anther-expressed genes in riceTokunori Hobo
Bioscience and Biotechnology Center, Nagoya University, Furocho, Chikusa, Nagoya, 464 8601 Japan
Plant Cell Physiol 49:1417-28. 2008....
Controlling morpholino experiments: don't stop making antisenseJudith S Eisen
Institute of Neuroscience, 1254 University of Oregon, Eugene, OR 97403 1254, USA
Development 135:1735-43. 2008..We also discuss how the use of morpholinos can lead to misleading results, including off-target effects, and we suggest controls that will allow researchers to interpret morpholino experiments correctly...
MicroRNA targets in DrosophilaAnton J Enright
Computational Biology Center, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10021, USA
Genome Biol 5:R1. 2003..Application to the D. melanogaster, Drosophila pseudoobscura and Anopheles gambiae genomes identifies several hundred target genes potentially regulated by one or more known miRNAs...
Signaling mechanisms linking neuronal activity to gene expression and plasticity of the nervous systemSteven W Flavell
F M Kirby Neurobiology Center, Children s Hospital Boston, and Departments of Neurology and Neurobiology, Harvard Medical School, Boston, Massachusetts 02115, USA
Annu Rev Neurosci 31:563-90. 2008....
A role for neural determination genes in specifying the dorsoventral identity of telencephalic neuronsC Fode
Institut de G en etique et de Biologie Mol eculaire et Cellulaire, Centre National de la Recherche Scient ifique Institut National de la Sant e et de la Recherche M edicale, Communaut e Urbaine de Strasbourg, France
Genes Dev 14:67-80. 2000....
bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in DrosophilaJulius Brennecke
European Molecular Biology Laboratory, Meyerhofstr 1, 69117 Heidelberg, Germany
Cell 113:25-36. 2003..bantam microRNA simultaneously stimulates cell proliferation and prevents apoptosis. We identify the pro-apoptotic gene hid as a target for regulation by bantam miRNA, providing an explanation for bantam's anti-apoptotic activity...
Wnt and TGF-beta signaling are required for the induction of an in vitro model of primitive streak formation using embryonic stem cellsPaul Gadue
Department of Gene and Cell Medicine, Black Family Stem Cell Institute, Mount Sinai School of Medicine, 1 Gustave Levy Place, Box 1496, New York, NY 10029, USA
Proc Natl Acad Sci U S A 103:16806-11. 2006....
Vertebrate neurogenesis is counteracted by Sox1-3 activityMagdalena Bylund
Ludwig Institute of Cancer Research, Karolinska Institute, Box 240, SE 171 77 Stockholm, Sweden
Nat Neurosci 6:1162-8. 2003..These data suggest that the generation of neurons from stem cells depends on the inhibition of Sox1-3 expression by proneural proteins...
Identification of genes required for embryo development in ArabidopsisIris Tzafrir
Department of Botany, Oklahoma State University, Stillwater, Oklahoma 74078, USA
Plant Physiol 135:1206-20. 2004..These candidates should facilitate the recovery of additional genes required for seed development...
Notch signalling limits angiogenic cell behaviour in developing zebrafish arteriesArndt F Siekmann
Program in Gene Function and Expression, University of Massachusetts Medical School, Lazare Research Building, 364 Plantation Street, Worcester, Massachusetts 01605, USA
Nature 445:781-4. 2007..Together, these studies indicate that proper specification of cell identity, position and behaviour in a developing blood-vessel sprout is required for normal angiogenesis, and implicate the Notch signalling pathway in this process...
Wnt11 and Ret/Gdnf pathways cooperate in regulating ureteric branching during metanephric kidney developmentArindam Majumdar
Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
Development 130:3175-85. 2003....
Genome regulation by polycomb and trithorax proteinsBernd Schuettengruber
Institute of Human Genetics, CNRS, 141, rue de la Cardonille, 34396 Montpellier Cedex 5, France
Cell 128:735-45. 2007..Recent work suggests that PcG proteins regulate the nuclear organization of their target genes and that PcG-mediated gene silencing involves noncoding RNAs and the RNAi machinery...
p63 is a p53 homologue required for limb and epidermal morphogenesisA A Mills
Howard Hughes Medical Institute, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA
Nature 398:708-13. 1999..Thus, in contrast to p53, p63 is essential for several aspects of ectodermal differentiation during embryogenesis...
The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in ArabidopsisJeong Hoe Kim
Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824 1312, USA
Plant J 36:94-104. 2003..These results indicate that AtGRF proteins play a role in the regulation of cell expansion in leaf and cotyledon tissues...
Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional controlR Gualdi
Department of Molecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, USA
Genes Dev 10:1670-82. 1996..The findings also provide insight into the evolutionary origin of different endodermal cell types...
Multipotent cell lineages in early mouse development depend on SOX2 functionAriel A Avilion
Division of Developmental Genetics, MRC National Institute for Medical Research, The Ridgeway, Mill Hill, London NW7 1AA, UK
Genes Dev 17:126-40. 2003..5 days postcoitum. Our data suggest that maternal components could be involved in establishing early cell fate decisions and that a combinatorial code, requiring SOX2 and OCT4, specifies the first three lineages present at implantation...
Opposing FGF and retinoid pathways: a signalling switch that controls differentiation and patterning onset in the extending vertebrate body axisRuth Diez del Corral
Division of Cell and Developmental Biology, Life Sciences Faculty, University of Dundee, UK
Bioessays 26:857-69. 2004....
Tissue-specific activities of C. elegans DAF-16 in the regulation of lifespanNataliya Libina
Department of Biochemistry and Biophysics, Mission Bay Genentech Hall, 600 16th Street, Room S312D, University of California, San Francisco, San Francisco, CA 94143, USA
Cell 115:489-502. 2003..We suggest that this network of tissue interactions and feedback regulation allows the tissues to equilibrate and fine-tune their expression of downstream genes, which, in turn, coordinates their rates of aging within the animal...
Osf2/Cbfa1: a transcriptional activator of osteoblast differentiationP Ducy
Department of Molecular Genetics, M D Anderson Cancer Center, University of Texas, Houston 77030, USA
Cell 89:747-54. 1997..This study identifies Osf2/Cbfa1 as an osteoblast-specific transcription factor and as a regulator of osteoblast differentiation...
Targeted mutagenesis of Tsix leads to nonrandom X inactivationJ T Lee
Department of Molecular Biology, Massachusetts General Hospital, Boston 02115, USA
Cell 99:47-57. 1999..Therefore, counting, choice, and silencing are genetically separable. Contrasting effects in XX and XY cells argue that negative and positive factors are involved in choosing active and inactive Xs...
Doublesex establishes sexual dimorphism in the Drosophila central nervous system in an isoform-dependent manner by directing cell numberLaura E Sanders
Sections of Molecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, California 90089, USA
Dev Biol 320:378-90. 2008....
Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cellsMegan F Cole
Whitehead Institute for Biomedical Research, Cambridge, Massachusetts 02142, USA
Genes Dev 22:746-55. 2008..Our results suggest that the Wnt pathway, through Tcf3, brings developmental signals directly to the core regulatory circuitry of ES cells to influence the balance between pluripotency and differentiation...
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unctionKristin D Kasschau
Center for Gene Research and Biotechnology and Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
Dev Cell 4:205-17. 2003..The basis for TuMV- and other virus-induced disease in plants may be explained, at least partly, by interference with miRNA-controlled developmental pathways that share components with the antiviral RNA-silencing pathway...
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegansB J Reinhart
Department of Molecular Biology, Massachusetts General Hospital, and Harvard Medical School, Boston 02114, USA
Nature 403:901-6. 2000..We propose that the sequential stage-specific expression of the lin-4 and let-7 regulatory RNAs triggers transitions in the complement of heterochronic regulatory proteins to coordinate developmental timing...
Efficient recombination in diverse tissues by a tamoxifen-inducible form of Cre: a tool for temporally regulated gene activation/inactivation in the mouseShigemi Hayashi
Department of Molecular and Cellular Biology, Harvard University, 16 Divinity Avenue, Cambridge, Massachusetts 02138, USA
Dev Biol 244:305-18. 2002..This inducible Cre system will be a broadly useful tool to modulate gene activity in mouse embryos, adults, and culture systems where temporal control is an important consideration...
The snail superfamily of zinc-finger transcription factorsM Angela Nieto
Instituto Cajal, Doctor Arce, 37, 28002 Madrid, Spain
Nat Rev Mol Cell Biol 3:155-66. 2002..Different family members have also been implicated in the signalling cascade that confers left right identity, as well as in the formation of appendages, neural differentiation, cell division and cell survival...
Head versus trunk patterning in the Drosophila embryo; collier requirement for formation of the intercalary segmentM Crozatier
Centre de Biologie du Developpement, UMR 5547, CNRS Université Paul Sabatier, 31062 TOULOUSE 04 cedex, France
Development 126:4385-94. 1999....
Follicular cells of the thyroid gland require Pax8 gene functionA Mansouri
MPI of Biophysical Chemistry, Dept of Molecular Cell Biology, Gottingen, Germany
Nat Genet 19:87-90. 1998..We present evidence that Pax8 is necessary for providing cues for the differentiation of competent endoderm primordia into thyroxin-producing follicular cells...
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesisYong Zhao
Department of Pediatrics Cardiology, University of Texas Southwestern Medical Center and Children s Medical Center Dallas, 6000 Harry Hines Boulevard, Dallas, Texas 75390 9148, USA
Nature 436:214-20. 2005..This work suggests that miR-1 genes titrate the effects of critical cardiac regulatory proteins to control the balance between differentiation and proliferation during cardiogenesis...
An elegant miRror: microRNAs in stem cells, developmental timing and cancerRachael A Nimmo
Department of Molecular, Cellular and Developmental Biology, Yale University, P O Box 208103, New Haven, CT 06520, USA
Chromosoma 118:405-18. 2009....
Disruption of the HNF-4 gene, expressed in visceral endoderm, leads to cell death in embryonic ectoderm and impaired gastrulation of mouse embryosW S Chen
Laboratory of Molecular Cell Biology, Rockefeller University, New York, New York 10021
Genes Dev 8:2466-77. 1994..Development of embryonic structures is severely impaired. These results demonstrate that the expression of HNF-4 in the visceral endoderm is essential for embryonic ectoderm survival and normal gastrulation...
Medaka vasa is required for migration but not survival of primordial germ cellsMingyou Li
State Key Laboratory of Freshwater Ecology and Biotechnology, Center for Developmental Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Graduate School of the Chinese Academy of Sciences, Wuhan, China
Mech Dev 126:366-81. 2009..Taken together, medaka vasa is cell-autonomously required for PGC migration, but dispensable to PGC proliferation, motility, identity and survival...
Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cellsJulie K Stock
Nuclear Organisation, MRC Clinical Sciences Centre, Imperial College School of Medicine, Hammersmith Hospital Campus, Du Cane Road, London W12 0NN, UK
Nat Cell Biol 9:1428-35. 2007..These observations provide an insight into the molecular mechanisms that allow ES cells to self-renew and yet retain the ability to generate multiple lineage outcomes...
Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in ArabidopsisHideki Goda
Plant Science Center, RIKEN, Suehirocho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan
Plant Physiol 134:1555-73. 2004....
Targeted disruption of SHIP leads to hemopoietic perturbations, lung pathology, and a shortened life spanC D Helgason
Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 1L3, Canada
Genes Dev 12:1610-20. 1998..Thus, homozygous disruption of SHIP establishes the crucial role of this molecule in modulating cytokine signaling within the hemopoietic system and provides a powerful model for further delineating its function...
FGFR-3 and FGFR-4 function cooperatively to direct alveogenesis in the murine lungM Weinstein
Laboratory of Biochemistry and Metabolism, National Institute of Diabetes, Digestive and Kidney Diseases, 10 Center Drive, National Institutes of Health, Bethesda, MD, USA
Development 125:3615-23. 1998..These data revealed a cooperative function of FGFR-3 and FGFR-4 to promote the formation of alveoli during postnatal lung development...
Genetic control of Drosophila nerve cord developmentJames B Skeath
Department of Genetics, Washington University School of Medicine, 4566 Scott Avenue, St Louis, MO 63110, USA
Curr Opin Neurobiol 13:8-15. 2003..These genes in turn specify the identity of any given postmitotic cell, which is evident by its cellular morphology and choice of neurotransmitter...
p63 is essential for regenerative proliferation in limb, craniofacial and epithelial developmentA Yang
Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA
Nature 398:714-8. 1999..Taken together, our results indicate that p63 is critical for maintaining the progenitor-cell populations that are necessary to sustain epithelial development and morphogenesis...
Boundaries in the Drosophila wing imaginal disc organize vein-specific genetic programsB Biehs
Department of Biology and Center for Molecular Genetics, University of California, San Diego, La Jolla, CA 92093 0349, USA ucsd edu
Development 125:4245-57. 1998..We present a model in which different A/P boundaries organize vein-specific genetic programs to govern the development of individual veins...
LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigsZhonglin Tang
Department of Gene and Cell Engineering, State Key Laboratory of Animal Nutrition, Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing 100094, PR China
Genome Biol 8:R115. 2007..Here, we describe a genome-wide analysis of differences in prenatal skeletal muscle between Tongcheng (a typical indigenous Chinese breed) and Landrace (a leaner Western breed) pigs...
Multiple roles of Sox2, an HMG-box transcription factor in avian neural crest developmentYoshio Wakamatsu
Department of Developmental Neurobiology, Graduate School of Medicine, Tohoku University, Sendai, Miyagi, Japan
Dev Dyn 229:74-86. 2004..Developmental Dynamics 229:74-86, 2004...
Epigenetic instability in ES cells and cloned miceD Humpherys
Whitehead Institute for Biomedical Research, Department of Biology, Massachusetts Institute of Technology, 9 Cambridge Center, Cambridge MA 02142, USA
Science 293:95-7. 2001..These data imply that even apparently normal cloned animals may have subtle abnormalities in gene expression...
Imp-L2, a putative homolog of vertebrate IGF-binding protein 7, counteracts insulin signaling in Drosophila and is essential for starvation resistanceBasil Honegger
Zoological Institute, University of Zurich, Winterthurerstrasse 190, CH 8057 Zurich, Switzerland
J Biol 7:10. 2008..In mammals, insulin-like growth factor binding proteins (IGFBPs) bind IGFs with high affinity and modulate their mitogenic, anti-apoptotic and metabolic actions, but no functional homologs have been identified in invertebrates so far...
Mechanisms of liver development: concepts for understanding liver disorders and design of novel therapiesFrederic P Lemaigre
de Duve Institute, Universite Catholique de Louvain, Brussels, Belgium
Gastroenterology 137:62-79. 2009....
Dorsal pancreas agenesis in retinoic acid-deficient Raldh2 mutant miceMerce Martin
INSERM, U682, Strasbourg, France
Dev Biol 284:399-411. 2005..We conclude that RA synthesized in the mesenchyme is specifically required for the normal development of the dorsal pancreatic endoderm at a stage preceding Pdx 1 function...
Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programsJuhee Jeong
Department of Psychiatry, Nina Ireland Laboratory of Developmental Neurobiology, University of California San Francisco, 1550 4th Street, San Francisco, CA 94158, USA
Development 135:2905-16. 2008..We propose a new model for Dlx-mediated mammalian jaw patterning...
Otx2 regulates subtype specification and neurogenesis in the midbrainBertrand Vernay
Institut de Génétique et de Biologie Moléculaire et Cellulaire Centre National de la Recherche Scientifique Institut National de la Santé et de la Recherche Médicale, Universite Louis Pasteur, 67404 Illkirch Cedex, Strasbourg, France
J Neurosci 25:4856-67. 2005..Altogether, these results demonstrate that Otx2 is required from E10.5 onward to regulate neuronal subtype identity and neurogenesis in the midbrain...
Comparative analysis of TGF beta s, BMPs, IGF1, msxs, fibronectin, osteonectin and bone sialoprotein gene expression during normal and in vitro-induced odontoblast differentiationC Begue-Kirn
Institut de Biologie Medicale, Universite Louis Pasteur, Faculte de Medecine, Strasbourg, France
Int J Dev Biol 38:405-20. 1994....
Hex: a homeobox gene revealing peri-implantation asymmetry in the mouse embryo and an early transient marker of endothelial cell precursorsP Q Thomas
MRC National Institute for Medical Research, London, UK
Development 125:85-94. 1998....
caudal is required for gnathal and thoracic patterning and for posterior elongation in the intermediate-germband cricket Gryllus bimaculatusYohei Shinmyo
Department of Biological Science and Technology, Faculty of Engineering, The University of Tokushima, 2-1 Minami-Josanjima-cho, Tokushima City 770-8506, Japan
Mech Dev 122:231-9. 2005..Since Wnt/Cdx pathways are involved in the posterior patterning of vertebrates, such mechanisms may be conserved in animals that undergo sequential segmentation from the posterior growth zone...
Insulin-like growth factor (IGF) signalling is required for early dorso-anterior development of the zebrafish embryoEdward Eivers
Department of Biochemistry, National University of Ireland, Galway, Ireland
Int J Dev Biol 48:1131-40. 2004..Our data is consistent with a common pathway for integration of IGF, FGF8 and anti-BMPs in early vertebrate development...
Anatomical and molecular reinvestigation of lamprey endostyle development provides new insight into thyroid gland evolutionBernhard Kluge
Institute for Developmental Biology, University of Cologne, Gyrhofstrasse 17, 50923 Cologne, Germany
Dev Genes Evol 215:32-40. 2005....
Transcription factor GATA-6 is expressed in the endocrine and GATA-4 in the exocrine pancreasIlkka Ketola
Children's Hospital and Program for Developmental and Reproductive Biology, Biomedicum Helsinki, PO Box 63, Room B525b, 00014 University of Helsinki, Helsinki, Finland
Mol Cell Endocrinol 226:51-7. 2004..We conclude that GATA-4 is a marker of exocrine pancreatic differentiation, whereas GATA-6 is a marker of endocrine pancreatic development...
A novel cdc2-related protein kinase expressed in the nervous systemM A Lazzaro
Centre for Research in Neuroscience, McGill University and Montreal General Hospital Research Institute, Quebec, Canada
J Neurochem 69:348-64. 1997....
A new paradigm for translational control: inhibition via 5'-3' mRNA tethering by Bicoid and the eIF4E cognate 4EHPPark F Cho
Department of Biochemistry, McGill Cancer Center, McGill University, 3655 Promenade Sir William Osler, Montreal, Quebec H3G 1Y6, Canada
Cell 121:411-23. 2005..This example of cap-dependent translational control that is not mediated by canonical eIF4E defines a new paradigm for translational inhibition involving tethering of the mRNA 5' and 3' ends...
Goosecoid and HNF-3beta genetically interact to regulate neural tube patterning during mouse embryogenesisS Filosa
Institut de Genetique et de Biologie Moleculaire et Cellulaire, CNRS INSERM Université Louis Pasteur Collège de France, Illkirch, CU de Strasbourg
Development 124:2843-54. 1997..Our results also suggest that interaction between gsc and HNF-3beta regulates other signalling molecules required for proper development of the foregut, branchial arches and heart...
Cloning of a mouse smoothened cDNA and expression patterns of hedgehog signalling molecules during chondrogenesis and cartilage differentiation in clonal mouse EC cells, ATDC5H Akiyama
Department of Orthopaedic Surgery, Graduate School of Medicine, Kyoto University, Sakyo, Japan
Biochem Biophys Res Commun 235:142-7. 1997..Our data suggest that hh signalling molecules may be involved in chondrogenesis and cartilage differentiation in ATDC5 cells...
Molecular cloning, chromosomal mapping and developmental expression of BAPX1, a novel human homeobox-containing gene homologous to Drosophila bagpipeC Tribioli
Brookdale Center for Developmental and Molecular Biology, Mount Sinai School of Medicine, New York, NY 10029 6574, USA
Gene 203:225-33. 1997..1, where several human genetic diseases involving dysmorphology of the skeleton have been assigned, raises the potential of it being a candidate gene for one of these disorders. O..
Identification and characterization of LMO4, an LMO gene with a novel pattern of expression during embryogenesisD A Kenny
Department of Medicine, University of California at San Diego, La Jolla, CA 92093 0650, USA
Proc Natl Acad Sci U S A 95:11257-62. 1998..Mesenchymal and thymic blast cell expression patterns of LMO4 and LMO2 are consistent with the suggestion that LMO genes inhibit differentiation...
TAF(II)s mediate activation of transcription in the Drosophila embryoF Sauer
Howard Hughes Medical Institute, Department of Molecular and Cell Biology, University of California, Berkeley 94720 3204, USA
Cell 87:1271-84. 1996..This genetic system also presents the opportunity to study the function of basal transcription components in regulating development of complex organisms...
Distinct functions of homeodomain-containing and homeodomain-less isoforms encoded by homothoraxBarbara Noro
Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA
Genes Dev 20:1636-50. 2006..We further demonstrate that the mouse ortholog of hth, Meis1, also encodes a HDless isoform, suggesting that homeodomain-less variants of this gene family are evolutionarily ancient...
Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by Univin, a TGF-beta related to Vg1Ryan Range
UMR 7009 CNRS, Université Pierre et Marie Curie Paris 6 Observatoire Océanologique, 06230 Villefranche sur Mer, France
Development 134:3649-64. 2007..The data are consistent with a model of nodal regulation in which a maternal TGF-beta acts in synergy with maternal transcription factors and with spatial repressors to establish the dorsal-ventral axis of the sea urchin embryo...
Prostate-specific and androgen-dependent expression of a novel homeobox geneC J Bieberich
Department of Virology, Jerome H Holland Laboratory, Rockville, Maryland 20855, USA
J Biol Chem 271:31779-82. 1996..1 protein, which likely functions as a transcription factor, plays a prominent role both in the initiation of prostate development and in the maintenance of the differentiated state of prostatic epithelial cells...
Vax1 is a novel homeobox-containing gene expressed in the developing anterior ventral forebrainM Hallonet
Max Planck Institut for Biophysical Chemistry, Department of Molecular and Cell Biology, Am Fassberg 11, Germany
Development 125:2599-610. 1998..The Vax1 gene is thus an interesting new tool to study the rostral ventral forebrain patterning, morphogenesis and evolution as well as the terminal differentiation of the forebrain in mouse and Xenopus...
Dorsoventral patterning in the Drosophila central nervous system: the intermediate neuroblasts defective homeobox gene specifies intermediate column identityJ B Weiss
Departments of Developmental Biology and Genetics, Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305 5329 USA
Genes Dev 12:3591-602. 1998....
Homeobox gene Hex is essential for onset of mouse embryonic liver development and differentiation of the monocyte lineageV W Keng
Graduate School of Bioagricultural Sciences, Chikusa ku, Nagoya, 464 8601, Japan
Biochem Biophys Res Commun 276:1155-61. 2000..These results indicate that Hex plays an essential role in progenitor cells which commit to the hepatic endoderm and in the hematopoietic differentiation of the monocyte lineage...
Control of hindbrain motor neuron differentiation by the homeobox gene Phox2bA Pattyn
Laboratoire de Genetique et Physiologie du Developpement, Developmental Biology Institute of Marseille, CNRS INSERM Univ Méditerranée AP de Marseille, Luminy Case 907, France
Development 127:1349-58. 2000..Thus, the loss of function of Phox2b in hindbrain motor neurons exemplifies a novel control point in the generation of CNS neurons...
NK-2 class homeobox genes and pharyngeal/oral patterning: Nkx2-3 is required for salivary gland and tooth morphogenesisChristine Biben
Victor Chang Cardiac Research Institute, St Vincent s Hospital, Darlinghurst, NSW, Australia
Int J Dev Biol 46:415-22. 2002..These data suggest roles for Nkx2-3 during pharyngeal organogenesis, although the considerable potential for genetic redundancy within and outside of this gene family may mask earlier functions in organ specification...
Cloning, genomic organization and expression pattern of a novel Drosophila gene, the disco-interacting protein 2 (dip2), and its murine homologM Mukhopadhyay
National Institute of Health, Laboratory of Mammalian Genes and Development, Bethesda, MD, USA
Gene 293:59-65. 2002..Our observations demonstrate that there is a remarkable degree of sequence conservation at the dip2 locus that is reflected in the nervous system-specific expression of both the Drosophila and mouse homologs...
The homeodomain-containing gene Xdbx inhibits neuronal differentiation in the developing embryoA A Gershon
Department of Developmental Neurobiology, The Rockefeller University, New York, NY 10021, USA
Development 127:2945-54. 2000..One role of Xdbx during normal development may therefore be to restrict spatially neuronal differentiation within the neural plate, possibly by altering the neuronal differentiation function of Xash3...
Coordinate regulation of motor neuron subtype identity and pan-neuronal properties by the bHLH repressor Olig2B G Novitch
Howard Hughes Medical Institute, Department of Biochemistry and Molecular Biophysics, Center for Neurobiology and Behavior, Columbia University, 701 West 168th Street, New York, NY 10032, USA
Neuron 31:773-89. 2001..Together, these studies show that Olig2 has a critical role in integrating diverse features of motor neuron differentiation in the developing spinal cord...
The orphan receptor ALK7 and the Activin receptor ALK4 mediate signaling by Nodal proteins during vertebrate developmentE Reissmann
Division of Molecular Neurobiology, Department of Neuroscience, Karolinska Institute, S 17177 Stockholm, Sweden
Genes Dev 15:2010-22. 2001..Therefore, our results indicate that both ALK4 and ALK7 can mediate signal transduction by Nodal proteins, although ALK7 appears to be a receptor more specifically dedicated to Nodal signaling...
A BMP-inducible gene, dlx5, regulates osteoblast differentiation and mesoderm inductionK Miyama
New Product Research Laboratories III, Daiichi Pharmaceutical Co, Ltd, Tokyo R and D Center, Kita Kasai, Edogawa ku, Tokyo, 134, Japan
Dev Biol 208:123-33. 1999..These findings suggest that mDlx5 is a target gene of the BMP signaling pathway and acts as an important regulator of both osteogenesis and dorsoventral patterning of embryonic axis...
Smoothened mutants reveal redundant roles for Shh and Ihh signaling including regulation of L/R asymmetry by the mouse nodeX M Zhang
Department of Molecular and Cellular Biology, The Biolabs, Harvard University, 16 Divinity Avenue, Cambridge, MA 02138, USA
Cell 105:781-92. 2001..Further, we demonstrate an absolute requirement for Hedgehog signaling in sclerotomal development and a role in cardiac morphogenesis.[Dedicated to Rosa Beddington, a pioneer in mammalian embryology]...
Expression of Dlx genes during the development of the murine dentitionZ Zhao
Department of Anthropology, Pennsylvania State University, University Park, PA 16802, USA
Dev Genes Evol 210:270-5. 2000..The relationship of Dlx gene expression to their genomic organization suggests coordinate regulation of linked genes at early stages but regulatory differences at later stages...
xPitx1 plays a role in specifying cement gland and head during early Xenopus developmentW Chang
Department of Biological Sciences, University of Windsor, Ontario, Canada
Genesis 29:78-90. 2001..Ectopic expression of xPitx1 in ectodermal explants directly promotes cement gland development as there was no evidence that mesodermal or neural tissue was present in explants...
Hedgehog signaling is required for pituitary gland developmentM Treier
Howard Hughes Medical Institute, School and Department of Medicine, UCSD, CMMW, Room 345, La Jolla, CA 92093 0648, USA
Development 128:377-86. 2001..Thus, SHH appears to exert effects on both proliferation and cell-type determination in pituitary gland development...
Combgap relays wingless signal reception to the determination of cortical cell fate in the Drosophila visual systemY Song
Department of Molecular and Cellular Biology Harvard University, Cambridge, MA 02138, USA
Mol Cell 6:1143-54. 2000..Combgap is thus a tissue-specific relay between Wingless and its target genes for the determination of cell fate in the visual cortex...
Research Grants
- GENE LIBRARY RESOURCE FOR THE SEA URCHIN S. PURPURATUSEric H Davidson; Fiscal Year: 2010..And we present the bioinformatics tools and databases of genomic sequence collections to the experimentalist. All of the individual goals detailed above are direct responses to this view. ..
- GENE LIBRARY RESOURCE FOR SEA URCHIN S. PURPURATUSEric Davidson; Fiscal Year: 2004..abstract_text> ..
- DRUGS AND DEVELOPMENT OF ADRENERGIC NERVOUS SYSTEMTheodore Slotkin; Fiscal Year: 1980....
- Vernalization a cold-induced regulatory network establishing cellular memoryRichard Amasino; Fiscal Year: 2009..A general understanding of epigenetic regulation in a range of multi-cellular organisms should ultimately contribute to the development of strategies to treat disease states. ..
- Computational Model of Gene Regulatory ProgramEric Davidson; Fiscal Year: 2007..abstract_text> ..
- Fetal & Adolescent Nicotine Effects on CNS 5HT SystemsTheodore Slotkin; Fiscal Year: 2003..abstract_text> ..
- DRUGS AND DEVELOPMENT OF THE ADRENERGIC NERVOUS SYSTEMTheodore Slotkin; Fiscal Year: 2003....
- GENE LIBRARY RESOURCE FOR THE SEA URCHIN S. PURPURATUSEric Davidson; Fiscal Year: 2005..And we present the bioinformatics tools and databases of genomic sequence collections to the experimentalist. All of the individual goals detailed above are direct responses to this view. ..
- Vernalization a cold-induced regulatory network establishing cellular memoryRichard Amasino; Fiscal Year: 2007..A general understanding of epigenetic regulation in a range of multi-cellular organisms should ultimately contribute to the development of strategies to treat disease states. ..
- GABAergic Dysfunction in AutismSEYYED FATEMI; Fiscal Year: 2009..Such outcomes will be significant, because they are expected to identify biochemical mechanisms responsible for abnormal brain development in early childhood, as seen in autism. ..
- GABAergic Dysfunction in AutismSEYYED HOSSEIN FATEMI; Fiscal Year: 2010..Such outcomes will be significant, because they are expected to identify biochemical mechanisms responsible for abnormal brain development in early childhood, as seen in autism. ..
- GENE LIBRARY RESOURCE FOR THE SEA URCHIN S. PURPURATUSEric Davidson; Fiscal Year: 2009..And we present the bioinformatics tools and databases of genomic sequence collections to the experimentalist. All of the individual goals detailed above are direct responses to this view. ..
- Varenicline and Smoking Cessation in SchizophreniaSEYYED HOSSEIN FATEMI; Fiscal Year: 2010..Such outcomes will be significant, because they will offer a new treatment for smoking cessation in this vulnerable population. ..
- Function of active chromatin domains in erythropoiesisMICHAEL D BULGER; Fiscal Year: 2010..As such, it has relevance to disorders in which tissue-specific gene expression is disrupted - which include a number of cancers - as well as gene therapy approaches involving stable transgene expression in specific cell types. ..
- Varenicline and Smoking Cessation in SchizophreniaSEYYED FATEMI; Fiscal Year: 2009..Such outcomes will be significant, because they will offer a new treatment for smoking cessation in this vulnerable population. ..
- GABAergic Dysfunction in AutismSEYYED FATEMI; Fiscal Year: 2009..Such outcomes will be significant, because they are expected to identify biochemical mechanisms responsible for abnormal brain development in early childhood, as seen in autism. ..
- Function of active chromatin domains in erythropoiesisMichael Bulger; Fiscal Year: 2009..As such, it has relevance to disorders in which tissue-specific gene expression is disrupted - which include a number of cancers - as well as gene therapy approaches involving stable transgene expression in specific cell types. ..
- Prenatal Virally Induced Brain Disorder in MouseSEYYED FATEMI; Fiscal Year: 2009..In addition, it is expected that the results will provide clues that will lead to fundamental advances in our knowledge of the pathogenesis of schizophrenia and, therefore, of how it can be prevented and treated. ..
- HOMOZYGOUS SEA URCHIN AS A POTENTIAL RESEARCH RESOURCEEric Davidson; Fiscal Year: 2003..purpuratus is a heritable trait, and carry out other investigations on genetic aspects of sex in S. purpuratus. ..
- DISSECTING THE EAR NEUROSENSORY DEVELOPMENT.Bernd Fritzsch; Fiscal Year: 2009..Verifying the function of those newly discovered genes in mouse development will greatly enhance our ability to move the already funded R01 project toward translational research. ..
- ISOLATION & FUNCTION OF THE XLIS NEURONAL MIGRATION GENEMargaret Ross; Fiscal Year: 2003....
- Hematopoietic Regulation of GATA SwitchesEmery H Bresnick; Fiscal Year: 2010..The studies will reveal how GATA switches regulate GATA-2 transcription, how GATA-1 and GATA-2 select DMA motifs, and insights of broad relevance to diverse developmental processes. ..
- Chromatin remodeling complexes in heart developmentBENOIT GAETAN BRUNEAU; Fiscal Year: 2010..We will discover new and important gene regulation pathways that form the heart, and importantly we will understand how these pathways are dysfunctional in human disease. ..
- Developmental Regulation of MacroH2A1 Chromatin AssemblyTheodore Rasmussen; Fiscal Year: 2009..Research proposed here will provide basic insights into differentiation biology and provide a framework for future attempts to achieve rationally-guided ES cell differentiation. ..
- MECHANISM OF THE HUMAN BETA-GLOBIN LOCUS CONTROL REGIONEMERY BRESNICK; Fiscal Year: 2005..The long-term objective is to therapeutically modulate beta-globin gene expression in humans with hemoglobinopathies by perturbing specific steps of the mechanism by which the LCR regulate the beta-globin genes. ..
- Chromatin remodeling complexes in heart developmentBENOIT BRUNEAU; Fiscal Year: 2007..We will discover new and important gene regulation pathways that form the heart, and importantly we will understand how these pathways are dysfunctional in human disease. ..
- Iroquois Homeobox Transcription Factors in Heart Development and PhysiologyBENOIT GAETAN BRUNEAU; Fiscal Year: 2010..The results obtained will be relevant to human diseases that affect these processes, including arrhythmias after infarct and cardiac remodeling in heart failure. ..
- COACTIVATORS THAT MEDIATE BETA GLOBIN LCR FUNCTIONEMERY BRESNICK; Fiscal Year: 2002..abstract_text> ..
- ISOLATION AND FUNCTION OF THE XLIS NEURONAL MIGRATIONMargaret Ross; Fiscal Year: 1999....
- Chromatin remodeling complexes in heart developmentBENOIT BRUNEAU; Fiscal Year: 2009..We will discover new and important gene regulation pathways that form the heart, and importantly we will understand how these pathways are dysfunctional in human disease. ..
- Pro-inflammatory gene regulation in a native chromatin environmentStephen T Smale; Fiscal Year: 2010..The long-term goal of this research is to develop strategies for the selective modulation of pro-inflammatory genes in the context of human disease. ..
- REGULATION OF TDT EXPRESSION DURING LYMPHOPOIESISSTEPHEN SMALE; Fiscal Year: 2009..abstract_text> ..
- Hematopoietic Regulation of GATA SwitchesEMERY BRESNICK; Fiscal Year: 2007..The studies will reveal how GATA switches regulate GATA-2 transcription, how GATA-1 and GATA-2 select DMA motifs, and insights of broad relevance to diverse developmental processes. ..
- Hemichordartes and the Origin of ChordatesJohn Gerhart; Fiscal Year: 2009..siRNA interventions will be used to evaluate the role of the encoded gene products in development. ..
- REGULATION OF TDT EXPRESSION DURING LYMPHOPOIESISSTEPHEN SMALE; Fiscal Year: 1999..Eventually, the investigators hope to use the knowledge generated during these studies to elucidate the molecular events that regulate early lymphoid development and the fetal/adult lymphopoietic transition. ..
