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Genomes and GenesSpecies
| evolutionSummarySummary: The process of cumulative change over successive generations through which organisms acquire their distinguishing morphological and physiological characteristics. Top Publications
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Publications
Bayesian inference of phylogeny and its impact on evolutionary biologyJ P Huelsenbeck
Department of Biology, University of Rochester, Rochester, NY 14627, USA
Science 294:2310-4. 2001....
A globally coherent fingerprint of climate change impacts across natural systemsCamille Parmesan
Integrative Biology, Patterson Laboratories 141, University of Texas, Austin, Texas 78712, USA
Nature 421:37-42. 2003..This suite of analyses generates 'very high confidence' (as laid down by the IPCC) that climate change is already affecting living systems...
Altruistic punishment in humansErnst Fehr
University of Zurich, Institute for Empirical Research in Economics, Blumlisalpstrasse 10, CH 8006 Zurich, Switzerland
Nature 415:137-40. 2002..These results suggest that future study of the evolution of human cooperation should include a strong focus on explaining altruistic punishment.
Fingerprints of global warming on wild animals and plantsTerry L Root
Center for Environmental Science and Policy, Institute for International Studies, Stanford University, Stanford, California 94305, USA
Nature 421:57-60. 2003....
APE: Analyses of Phylogenetics and Evolution in R languageEmmanuel Paradis
Laboratoire de Paléontologie, Paléobiologie and Phylogénie, Institut des Sciences de l Evolution, Universite Montpellier II, F 34095 Montpellier cedex 05, France
Bioinformatics 20:289-90. 2004Analysis of Phylogenetics and Evolution (APE) is a package written in the R language for use in molecular evolution and phylogenetics...
Relaxed phylogenetics and dating with confidenceAlexei J Drummond
Department of Zoology, University of Oxford, Oxford, United Kingdom
PLoS Biol 4:e88. 2006..From these we conclude that our method is phylogenetically more accurate and precise than the traditional unrooted model while adding the ability to infer a timescale to evolution.
Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular studyJerome C Regier
Center for Biosystems Research, University of Maryland Biotechnology Institute, College Park, 20742, USA
BMC Evol Biol 9:280. 2009..7 kb total), and character subsets therein, to resolve relationships among 123 species representing 27 (of 33) superfamilies and 55 (of 100) families of Ditrysia under maximum likelihood analysis...
Living with the past: evolution, development, and patterns of diseasePeter D Gluckman
Liggins Institute, University of Auckland and National Research Centre for Growth and Development, 2 6 Park Avenue, Grafton, Private Bag 92019, Auckland, New Zealand
Science 305:1733-6. 2004..This "developmental origins of health and disease" concept may have important biological, medical, and socioeconomic implications...
Adaptive protein evolution at the Adh locus in DrosophilaJ H McDonald
Department of Ecology and Evolutionary Biology, Princeton University, New Jersey 08544
Nature 351:652-4. 1991..Here we propose a simple statistical test of the neutral protein evolution hypothesis based on a comparison of the number of amino-acid replacement substitutions to synonymous ..
Evolution in the fast lane: rapidly evolving sex-related genes in DrosophilaWilfried Haerty
Department of Biology, McMaster University, Hamilton, Ontario L8S 4K1, Canada
Genetics 177:1321-35. 2007..genes, male seminal fluid proteins (SFPs), and spermatogenesis genes show lineage-specific bursts of accelerated evolution and positive selection. SFP genes also show evidence of lineage-specific gene loss and/or gain...
Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and diseaseAndrew P Feinberg
Center for Epigenetics, Johns Hopkins University, Baltimore, MD 21205, USA
Proc Natl Acad Sci U S A 107:1757-64. 2010..Here, we propose a new non-Lamarckian theory for a role of epigenetics in evolution. We suggest that genetic variants that do not change the mean phenotype could change the variability of ..
The puzzle of plastid evolutionJohn M Archibald
The Canadian Institute for Advanced Research, Program in Integrated Microbial Biodiversity, Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, B3H 1X5, Canada
Curr Biol 19:R81-8. 2009..of the origin and spread of plastids remains an important yet elusive goal in the field of eukaryotic evolution. Combined with the discovery of new photosynthetic and non-photosynthetic protist lineages, the results of ..
Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolutionEva Jablonka
The Cohn Institute for the History and Philosophy of Science and Ideas, Tel Aviv University, Tel Aviv 69978, Israel
Q Rev Biol 84:131-76. 2009..We conclude by exploring some of the consequences of epigenetic inheritance for the study of evolution, while also pointing to the importance of recognizing and understanding epigenetic inheritance for practical and ..
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancerYingguang Frank Chan
Department of Developmental Biology and Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA
Science 327:302-5. 2010....
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolutionTal Dagan
Institut für Botanik III, Heinrich Heine Universitat Dusseldorf, Universitatsstrasse 1, 40225 Dusseldorf, Germany
Proc Natl Acad Sci U S A 105:10039-44. 2008..of natural variation among prokaryotes, but the significance of its quantitative contribution to genome evolution is debated...
Comprehensive functional analysis of Mycobacterium tuberculosis toxin-antitoxin systems: implications for pathogenesis, stress responses, and evolutionHolly R Ramage
Department of Microbiology and Immunology, University of California San Francisco, San Francisco, California, USA
PLoS Genet 5:e1000767. 2009..The expansion and maintenance of TA genes in the MTBC, coupled with the finding that a subset is transcriptionally activated by stress, suggests that TA systems are important for M. tuberculosis pathogenesis...
Gene regulatory networks in the evolution and development of the heartEric N Olson
Department of Molecular Biology, University of Texas Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX 75390, USA
Science 313:1922-7. 2006..During evolution, this ancestral gene network was expanded through gene duplication and co-option of additional networks...
The delayed rise of present-day mammalsOlaf R P Bininda-Emonds
Lehrstuhl für Tierzucht, Technical University of Munich, 85354 Freising Weihenstephan, Germany
Nature 446:507-12. 2007....
Climate change and evolution: disentangling environmental and genetic responsesP Gienapp
Ecological Genetics Research Unit, Department of Biological and Environmental Sciences, PO Box 65, FI 00014 University of Helsinki, Finland
Mol Ecol 17:167-78. 2008..Hence, clear-cut evidence indicating a significant role for evolutionary adaptation to ongoing climate warming is conspicuously scarce...
Origins and evolution of the Western diet: health implications for the 21st centuryLoren Cordain
Department of Health and Exercise Science, Colorado State University, Fort Collins, CO 80523, USA
Am J Clin Nutr 81:341-54. 2005..The evolutionary collision of our ancient genome with the nutritional qualities of recently introduced foods may underlie many of the chronic diseases of Western civilization...
Evolution of the neocortex: a perspective from developmental biologyPasko Rakic
Department of Neurobiology and Kavli Institute for Neuroscience, Yale University School of Medicine, New Haven, Connecticut 06510, USA
Nat Rev Neurosci 10:724-35. 2009The enlargement and species-specific elaboration of the cerebral neocortex during evolution holds the secret to the mental abilities of humans; however, the genetic origin and cellular mechanisms that generated the distinct evolutionary ..
Origin and evolution of the mitochondrial proteomeC G Kurland
Department of Molecular Evolution, Evolutionary Biology Centre, University of Uppsala, Uppsala SE 752 36, Lund University, Lund SE 223 62, Sweden
Microbiol Mol Biol Rev 64:786-820. 2000..There are no indications of a specific alpha-proteobacterial origin to genes for glycolysis. In the absence of data to the contrary, it is assumed that the ancestral host cell was a heterotroph...
The nature of human altruismErnst Fehr
University of Zurich, Institute for Empirical Research in Economics, Blumlisalpstrasse 10, CH 8006 Zurich, Switzerland
Nature 425:785-91. 2003..Current gene-based evolutionary theories cannot explain important patterns of human altruism, pointing towards the importance of both theories of cultural evolution as well as gene-culture co-evolution.
Spatial structure often inhibits the evolution of cooperation in the snowdrift gameChristoph Hauert
Department of Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, British Columbia V6T 1Z4, Canada
Nature 428:643-6. 2004..basis of spatial extensions of the Prisoner's Dilemma, it is widely accepted that spatial structure promotes the evolution of cooperation...
Origins and evolution of eukaryotic RNA interferenceSvetlana A Shabalina
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Trends Ecol Evol 23:578-87. 2008..of diverse eukaryotes available for comparison, the opportunity emerges for insights into the origin and evolution of RNA interference (RNAi). The miRNA repertoires of plants and animals appear to have evolved independently...
Mitochondrial evolutionM W Gray
Department of Biochemistry, Dalhousie University, Halifax, Nova Scotia B3H 4H7, Canada
Science 283:1476-81. 1999..endosymbiosis theory is a favored model for explaining the origin of mitochondria, a defining event in the evolution of eukaryotic cells...
Ancient animal microRNAs and the evolution of tissue identityFoteini Christodoulou
Developmental Biology Unit, European Molecular Biology Laboratory, D 69117 Heidelberg, Germany
Nature 463:1084-8. 2010The spectacular escalation in complexity in early bilaterian evolution correlates with a strong increase in the number of microRNAs...
Expanded expression of Sonic Hedgehog in Astyanax cavefish: multiple consequences on forebrain development and evolutionArnaud Menuet
CNRS UPR2197 DEPSN, Institut Fessard, Avenue de la Terrasse, 91198 Gif sur Yvette Cedex, France
Development 134:845-55. 2007..Here, we report how enhanced Shh midline signalling affects the evolution of telencephalic and diencephalic neuronal patterning in the blind cavefish Astyanax mexicanus, a teleost fish ..
Horizontal gene transfer in eukaryotic evolutionPatrick J Keeling
Department of Botany, University of British Columbia, Vancouver, British Columbia V6T 1Z, Canada
Nat Rev Genet 9:605-18. 2008..Horizontal gene transfer (HGT; also known as lateral gene transfer) has had an important role in eukaryotic genome evolution, but its importance is often overshadowed by the greater prevalence and our more advanced understanding of gene ..
Genomics and evolution of heritable bacterial symbiontsNancy A Moran
Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA
Annu Rev Genet 42:165-90. 2008..In addition, insect symbionts provide some of the extremes of cellular genomes, including the smallest and the fastest evolving, raising new questions about the limits of evolution of life.
Quantifying social group evolutionGergely Palla
Statistical and Biological Physics Research Group of the HAS, Pázmány P stny 1A, H 1117 Budapest, Hungary
Nature 446:664-7. 2007..communication patterns of individuals, the associated social and communication network is subject to constant evolution. Our knowledge of the mechanisms governing the underlying community dynamics is limited, but is essential for a ..
A basal dromaeosaurid and size evolution preceding avian flightAlan H Turner
Division of Paleontology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024 5192, USA
Science 317:1378-81. 2007..the clade including Avialae, Troodontidae, and Dromaeosauridae), phylogenetically earlier than where flight evolution is strongly inferred...
Changes in Hox genes' structure and function during the evolution of the squamate body planNicolas Di-Poï
National Research Center Frontiers in Genetics, Department of Zoology and Animal Biology, University of Geneva, Sciences III, 1211 Geneva 4, Switzerland
Nature 464:99-103. 2010....
GEIGER: investigating evolutionary radiationsLuke J Harmon
Department of Biological Sciences, University of Idaho, Moscow, ID 83844, USA
Bioinformatics 24:129-31. 2008..AVAILABILITY: This open source software is written entirely in the R language and is freely available through the Comprehensive R Archive Network (CRAN) at http://cran.r-project.org/...
Pax 6: mastering eye morphogenesis and eye evolutionW J Gehring
Department of Cell Biology, Biozentrum, University of Basel, Klingelbergstrasse 70, 4056 Basel, Switzerland
Trends Genet 15:371-7. 1999..It is proposed that the various eye-types found in metazoa are derived from a common prototype, monophyletically, by a mechanism called intercalary evolution.
The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrataSteven Lockton
Department of Ecology and Evolutionary Biology, University of California, Irvine, USA
BMC Evol Biol 10:10. 2010..majority of plant genomes, and thus understanding TE evolutionary dynamics is key to understanding plant genome evolution. Plant reproductive systems are diverse and mating type variation is one factor among many hypothesized to ..
Evolution of prey in ecological time reduces the effect size of predators in experimental microcosmsCasey P Terhorst
Department of Biological Science, Florida State University, Tallahassee, Florida 32306 4295, USA
Ecology 91:629-36. 2010..the effect of predators on prey population abundance while evolutionary biologists have measured prey trait evolution in response to predation...
Five rules for the evolution of cooperationMartin A Nowak
Program for Evolutionary Dynamics, Department of Organismic and Evolutionary Biology, and Department of Mathematics, Harvard University, Cambridge, MA 02138, USA
Science 314:1560-3. 2006Cooperation is needed for evolution to construct new levels of organization. Genomes, cells, multicellular organisms, social insects, and human society are all based on cooperation...
Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductionsK M Dlugosch
Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California 95064, USA
Mol Ecol 17:431-49. 2008..for loss of diversity in quantitative traits? Do invaders that have experienced strong bottlenecks show adaptive evolution? How do multiple introductions influence adaptation on a landscape scale? We reviewed studies of 80 species of ..
Causes and consequences of the evolution of reproductive proteinsLeslie M Turner
Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
Int J Dev Biol 52:769-80. 2008..In particular, we highlight the ways that integrating the different but complementary approaches of evolutionary and developmental biology will provide new insights into fertilization processes...
Discovery of the largest orbweaving spider species: the evolution of gigantism in NephilaMatjaz Kuntner
Institute of Biology, Scientific Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
PLoS ONE 4:e7516. 2009..Here, we report on the discovery of a new, giant Nephila species from Africa and Madagascar, and review size evolution and SSD in Nephilidae.
Public information: from nosy neighbors to cultural evolutionEtienne Danchin
U P M C CNRS UMR7625, Bât A 7e étage Case 237, 7 quai Saint Bernard, 75252 Paris Cedex 05, France
Science 305:487-91. 2004..The use of public information is taxonomically widespread and can enhance fitness. Public information can lead to cultural evolution, which we suggest may then affect biological evolution.
Toward automatic reconstruction of a highly resolved tree of lifeFrancesca D Ciccarelli
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69012 Heidelberg, Germany
Science 311:1283-7. 2006..For example, we place the phylum Acidobacteria as a sister group of delta-Proteobacteria, support a Gram-positive origin of Bacteria, and suggest a thermophilic last universal common ancestor...
Canalization breakdown and evolution in a source-sink systemTristan Kimbrell
Department of Zoology, University of Florida, P O Box 118525, Gainesville, Florida, 32611, USA
Am Nat 169:370-82. 2007..We study evolution in one type of novel environment: a sink habitat where populations cannot persist without recurrent immigration ..
The phage lambda major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion systemLisa G Pell
Department of Biochemistry, University of Toronto, Medical Sciences Building, Toronto, ON M5S 1A8, Canada
Proc Natl Acad Sci U S A 106:4160-5. 2009..Using Hcp1 as a model, we propose a polymerization mechanism for gpV involving several disorder-to-order transitions...
Diversity and evolution of coral fluorescent proteinsNaila O Alieva
Section of Integrative Biology, University of Texas at Austin, Austin, Texas, United States of America
PLoS ONE 3:e2680. 2008..Our results highlight the extent of convergent or parallel evolution of the color diversity in corals, provide the foundation for experimental studies of evolutionary processes that ..
Generalized linear mixed models: a practical guide for ecology and evolutionBenjamin M Bolker
Department of Botany and Zoology, University of Florida, Gainesville, FL 32611 8525, USA
Trends Ecol Evol 24:127-35. 2009..of research on GLMMs in the last decade has generated considerable uncertainty for practitioners in ecology and evolution. Despite the availability of accurate techniques for estimating GLMM parameters in simple cases, complex GLMMs ..
Evolution of mammals and their gut microbesRuth E Ley
Center for Genome Sciences, Washington University School of Medicine, St Louis, MO 63108, USA
Science 320:1647-51. 2008....
The evolution of courtship behaviors through the origination of a new gene in DrosophilaHongzheng Dai
Committee on Genetics, University of Chicago, 920 East 58th Street, Chicago, IL 60637, USA
Proc Natl Acad Sci U S A 105:7478-83. 2008..These chimeric genes often evolve rapidly, suggesting that they undergo adaptive evolution and may therefore be involved in novel phenotypes. Their functions, however, are rarely known...
The probability of duplicate gene preservation by subfunctionalizationM Lynch
Department of Biology, University of Oregon, Eugene, Oregon 97403, USA
Genetics 154:459-73. 2000....
Antagonistic coevolution accelerates molecular evolutionSteve Paterson
School of Biological Sciences, Biosciences Building, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK
Nature 464:275-8. 2010..hypothesis proposes that coevolution of interacting species (such as hosts and parasites) should drive molecular evolution through continual natural selection for adaptation and counter-adaptation...
Paleontological evidence to date the tree of lifeMichael J Benton
Department of Earth Sciences, Wills Memorial Building, Queen s Road, Bristol BS8 1RJ, UK
Mol Biol Evol 24:26-53. 2007..Because fossil-based dates are constraints, and because molecular evolution is not perfectly clock-like, analysts should use more rather than fewer dates, but there has to be a balance ..
Female promiscuity promotes the evolution of faster sperm in cichlid fishesJohn L Fitzpatrick
Centre for Evolutionary Biology, University of Western Australia, Crawley 6009, Australia
Proc Natl Acad Sci U S A 106:1128-32. 2009..Using phylogenetic analyses, we also reconstructed the probable evolutionary route of trait evolution in this taxon, and show that, in response to increases in the magnitude of sperm competition, the evolution of ..
Distributions of epistasis in microbes fit predictions from a fitness landscape modelGuillaume Martin
Centre d écologie fonctionnelle et évolutive Centre National de la Recherche Scientifique UMR 5175, 1919 Route de Mende, 34293 Montpellier, France
Nat Genet 39:555-60. 2007..several mutations combine? Despite its simplicity, this question is central to the understanding of multilocus evolution. Epistasis (the interaction between alleles at different loci), especially epistasis for fitness traits such as ..
The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolismE Virginia Armbrust
School of Oceanography, University of Washington, Seattle, WA 98195, USA
Science 306:79-86. 2004....
The role of linkage disequilibrium in the evolution of premating isolationM R Servedio
Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA
Heredity (Edinb) 102:51-6. 2009..The goal of this discussion is not to thoroughly review these factors, but instead to concentrate on aspects and implications of these solutions that are currently underemphasized in the speciation literature...
The evolution of Pseudomonas syringae host specificity and type III effector repertoiresMagdalen Lindeberg
Department of Plant Pathology and Plant Microbe Biology, Cornell University, Ithaca, NY 14853, USA
Mol Plant Pathol 10:767-75. 2009..Tools are now available to test several hypotheses for the nature and evolution of P. syringae host specificity and nonhost resistance.
Assortment and the evolution of generalized reciprocityDaniel J Rankin
Division of Behavioral Ecology, Institute of Ecology and Evolution, University of Bern, Wohlenstrasse 50a, CH 3032 Hinterkappelen, Switzerland
Evolution 63:1913-22. 2009..Here we analyze a model for the evolution of generalized reciprocity, incorporating assortment of encounters, to investigate the conditions under which it ..
Integrating animal temperament within ecology and evolutionDenis Reale
Canada Research Chair in Behavioural Ecology and Groupe de Recherche en Ecologie Comportementale et Animale, Departement des Sciences Biologiques, Universite du Quebec a Montreal, Succursale Centre Ville, Montreal, Quebec, Canada
Biol Rev Camb Philos Soc 82:291-318. 2007..genetics, pharmacology, and animal husbandry, but relatively few studies have examined the ecology and evolution of temperament traits...
Evolution of cell recognition by virusesE Baranowski
, , Cantoblanco, 28049 Madrid, Spain
Science 292:1102-5. 2001b>Evolution of receptor specificity by viruses has several implications for viral pathogenesis, host range, virus-mediated gene targeting, and viral adaptation after organ transplantation and xenotransplantation, as well as for the ..
Sexual reproduction and the evolution of microbial pathogensJoseph Heitman
Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710, USA
Curr Biol 16:R711-25. 2006..Continued investigation of the sexual nature of microbial pathogens should facilitate both laboratory investigation and an understanding of the complex interplay between pathogens, hosts, vectors, and their environments...
Global distribution and evolution of Panton-Valentine leukocidin-positive methicillin-susceptible Staphylococcus aureus, 1981-2007Jean Philippe Rasigade
Universite Lyon 1, Centre National de Référence des Staphylocoques, and Institut National de la Santé et de la Recherche Médicale U851, Institut Fédératif de Recherche 128, Lyon, France
J Infect Dis 201:1589-97. 2010..The epidemiological profile of PVL-positive community-acquired (CA) MRSA has been extensively studied, but few corresponding data on PVL-positive MSSA are available...
Dynamics of competing species in a model of adaptive radiation and macroevolutionBirgitte Freiesleben De Blasio
Department of Biostatistics, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway
Phys Rev E Stat Nonlin Soft Matter Phys 72:031916. 2005We present a simple model of adaptive radiation in evolution based on species competition. Competition is found to promote species divergence and branching, and to dampen the net species production...
The Enhancer of split and Achaete-Scute complexes of Drosophilids derived from simple ur-complexes preserved in mosquito and honeybeeRebekka Schlatter
Universitat Hohenheim, Institut fur Genetik, Garbenstr 30, 70599 Stuttgart, Germany
BMC Evol Biol 5:67. 2005..The question arose how these complexes evolved with regard to gene number in the evolution of insects concentrating on Diptera and the Hymenoptera Apis mellifera.
Analysis of vertebrate genomes suggests a new model for clade B serpin evolutionDion Kaiserman
Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria, Australia
BMC Genomics 6:167. 2005....
Tradeoff between short-term and long-term adaptation in a changing environmentRobert Forster
Digital Life Laboratory, California Institute of Technology, Pasadena, California 91125, USA
Phys Rev E Stat Nonlin Soft Matter Phys 72:041922. 2005..Our model is relevant for arboviruses, which alternate between different host species on a regular basis...
Modern Quaternary plant lineages promote diversity through facilitation of ancient Tertiary lineagesAlfonso Valiente-Banuet
Departamento de Ecologia de la Biodiversidad, Instituto de Ecologia, Universidad Nacional Autonoma de Mexico, A P 70 275, C P 04510 Mexico D F, Mexico
Proc Natl Acad Sci U S A 103:16812-7. 2006....
The species-area relationship and evolutionDaniel Lawson
Department of Mathematics, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK
J Theor Biol 241:590-600. 2006..We examine an individual-based model of co-evolution on a spatial lattice based on the tangled nature model in which species are emergent structures, and show that ..
A game-theoretic model for punctuated equilibrium: species invasion and stasis through coevolutionRoss Cressman
Department of Mathematics, Wilfrid Laurier University, Waterloo, Ont, Canada N2L 3C5
Biosystems 84:1-14. 2006..This successful invasion is quickly followed by evolutionary changes in behavior when this species discovers the other habitat, leading to punctuated equilibrium as the final outcome...
Divergent selection and the evolution of signal traits and mating preferencesHoward D Rundle
School of Integrative Biology, University of Queensland, St Lucia, Queensland, Australia
PLoS Biol 3:e368. 2005..We conducted a laboratory evolution experiment, using the fruit fly Drosophila serrata, to explore the role of divergent selection between ..
Environmental change preceded Caribbean extinction by 2 million yearsAaron O'Dea
Smithsonian Tropical Research Institute, P O Box 0843 03092, Balboa, Republic of Panama
Proc Natl Acad Sci U S A 104:5501-6. 2007....
Brain organization and specialization in deep-sea chondrichthyansKara E Yopak
Leigh Marine Laboratory, The University of Auckland, Leigh, New Zealand
Brain Behav Evol 71:287-304. 2008Chondrichthyans occupy a basal place in vertebrate evolution and offer a relatively unexplored opportunity to study the evolution of vertebrate brains...
Are invaders moving targets? The generality and persistence of advantages in size, reproduction, and enemy release in invasive plant species with time since introductionChristine V Hawkes
Section of Integrative Biology, University of Texas, Austin, Texas 78712, USA
Am Nat 170:832-43. 2007..The observed nonlinear relationships are consistent with dynamic invasions and may define targets for eradication efforts if these patterns hold up for individual species...
Phylogenetic relatedness and ecological interactions determine antipredator behaviorSarah Dalesman
Marine Biology and Ecology Research Centre, School of Biological Sciences, University of Plymouth, Plymouth PL4 8AA, United Kingdom
Ecology 88:2462-7. 2007....
Exceptionally preserved jellyfishes from the Middle CambrianPaulyn Cartwright
Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, United States of America
PLoS ONE 2:e1121. 2007..diverging animal group and thus insight into their origin and diversification is key to understanding metazoan evolution. Further, cnidarian jellyfish comprise an important component of modern marine planktonic ecosystems...
Evolution of host specificity drives reproductive isolation among RNA virusesSiobain Duffy
Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA
Evolution 61:2614-22. 2007..We tested this expectation by monitoring the evolution of reproductive isolation in laboratory populations of an RNA virus that undergoes genetic exchange only when ..
A comparative method for studying adaptation to a randomly evolving environmentThomas F Hansen
Center for Evolutionary and Ecological Synthesis, Department of Biology, University of Oslo, PB 1066, Blindern, 0316 Oslo, Norway
Evolution 62:1965-77. 2008..methods used for testing adaptive hypotheses make evolutionary assumptions that are not compatible with evolution toward an optimal state. As a consequence they do not correct for maladaptation...
Evolutionary relationships among food habit, loss of flight, and reproductive traits: life-history evolution in the Silphinae (Coleoptera: Silphidae)Hiroshi Ikeda
Laboratory of Forest Zoology, Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113 8657, Japan
Evolution 62:2065-79. 2008..We elucidated the evolutionary history of flight loss and its relationship to evolution in food habit, relative reproductive investment, and egg size in the Silphinae (Coleoptera: Silphidae)...
Functional equivalence of morphologies enables morphological and ecological diversityRebecca L Young
Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
Evolution 61:2480-92. 2007..We discuss the importance of developmental and functional integration among traits for evolutionary diversification of morphological structures that generate equivalent functions...
Facilitation can increase the phylogenetic diversity of plant communitiesAlfonso Valiente-Banuet
Departamento de Ecologia de la Biodiversidad, Instituto de Ecologia, Universidad Nacional Autónoma de México A P 70 275, C P 04510, Mexico, D F, Mexico
Ecol Lett 10:1029-36. 2007..Likewise, a phylogenetic supertree of all species of three communities driven by facilitation showed that nurse species facilitated distantly related species and increased phylogenetic diversity...
Evolution on a local scale: developmental, functional, and genetic bases of divergence in bill form and associated changes in song structure between adjacent habitatsAlexander V Badyaev
Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA
Evolution 62:1951-64. 2008....
Using patterns of fin and limb phylogeny to test developmental-evolutionary scenariosMichael I Coates
Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL 60637, USA
Novartis Found Symp 284:245-55; discussion 255-61. 2007..Such comparisons inform questions about the evolution of developmental autonomy (modularity)...
Molecular phylogeny of reed beetles (Col., Chrysomelidae, Donaciinae): the signature of ecological specialization and geographical isolationGregor Kölsch
University of Hamburg, Zoological Institute, Martin Luther King Platz 3, D 20146 Hamburg, Germany
Mol Phylogenet Evol 48:936-52. 2008..In their evolution based on ecological specialization with a recently superimposed geographic isolation, the Donaciinae follow a ..
Patterns of endemism and species richness in Malagasy cophyline frogs support a key role of mountainous areas for speciationKatharina C Wollenberg
Zoological Institute, Division of Evolutionary Biology, Technical University of Braunschweig, Spielmannstr 8, 38106 Braunschweig, Germany
Evolution 62:1890-907. 2008..High conservation priority is ascribed to these areas...
Nuclear organization and morphology of cholinergic, putative catecholaminergic and serotonergic neurons in the brains of two species of African mole-ratAdhil Bhagwandin
School of Anatomical Sciences, Faculty of Health Sciences, University of the Witwatersrand, 7 York Road, Parktown, Johannesburg, Gauteng 2193, South Africa
J Chem Neuroanat 35:371-87. 2008..We conclude that changes in the nuclear organization of the systems studied appear to demonstrate a form of constraint related to the phylogenetic level of the order...
Support for the allotonic frequency hypothesis in an insectivorous bat communityM Corrie Schoeman
Department of Zoology, University of Cape Town, Private Bag, Rondebosch 7701, South Africa
Oecologia 134:154-62. 2003..These results suggest that prey defences may mediate other factors structuring bat communities, e.g. competition. Competition may be reduced for those species of bats that can circumvent prey defences...
Biological correlates of extinction risk in batsKate E Jones
Department of Biological Sciences, Imperial College at Silwood Park, Ascot, Berkshire SL5 7PY, United Kingdom
Am Nat 161:601-14. 2003....
The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews)Christophe J Douady
Biology and Biochemistry, Queen's University of Belfast, 97 Lisburn Road, Belfast BT9 7BL, United Kingdom
Proc Natl Acad Sci U S A 100:8325-30. 2003..The strongly supported phylogeny provides compelling evidence for a complex history of mosaic evolution, including pronounced bradytelic morphological evolution in some lineages, accelerated morphological evolution ..
A spatially explicit individual-based model of reinforcement in hybrid zonesSuzanne Sadedin
Department of Biological Sciences, Monash University, Victoria 3800 Australia
Evolution 57:962-70. 2003..In addition, the results show that hybrid infertility may facilitate the process of reinforcement and speciation...
Invasion of vacant niches and subsequent sympatric speciationMasakado Kawata
Division of Ecology and Evolutionary Biology, Graduate School of Life Sciences, Tohoku University, Biology Building, Aoba ku, Sendai 980 8578, Japan
Proc Biol Sci 269:55-63. 2002..The results indicate that populations whose individuals have small Wright's genetic neighbourhoods may often exploit a vacant niche and diversify sympatrically in the process...
Evolution: opportunity versus innovationPaul H Harvey
Nature 425:676-7. 2003
Speciation in multidimensional evolutionary spaceA Vukics
Department of Nonlinear and Quantum Optics, Institute for Solid State Physics and Optics, Hungarian Academy of Sciences, P.O. Box 49, H-1525 Budapest, Hungary
Phys Rev E Stat Nonlin Soft Matter Phys 68:041903. 2003..The branching at the singular point, which is a fixed point of the directional evolution, may occur into two or three, but not more, directions...
Sexual dimorphism and adaptive speciation: two sides of the same ecological coinDaniel I Bolnick
Section of Evolution and Ecology, Center for Population Biology, Storer Hall, University of California, Davis, California 95616, USA
Evolution 57:2433-49. 2003..concerned with demonstrating that it is possible for ecologically driven disruptive selection to lead to the evolution of assortative mating and hence speciation...
Relating parasite communities to host environmental conditions using phylogenetic toolsJ Cabaret
INRA, BASE, 37380 Nouzilly, France
Parasite 10:287-95. 2003..The evolution along time pattern of change in the sheep infection of sheep was not the same for in all the animals, and two ..
Genes and speciationChung-I Wu
Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA
Nat Rev Genet 5:114-22. 2004
Human population density and extinction risk in the world's carnivoresMarcel Cardillo
Department of Biological Sciences, Imperial College London, Ascot, United Kingdom
PLoS Biol 2:E197. 2004..We suggest that a preemptive approach to species conservation is needed to identify and protect species that may not be threatened at present but may become so in the near future...
Simulated ecology-driven sympatric speciationJ S Sa Martins
Colorado Center for Chaos and Complexity, CIRES, CB 216, University of Colorado, Boulder, Colorado 80309, USA
Phys Rev E Stat Nonlin Soft Matter Phys 64:021906. 2001..In the presence of this polymorphism, the simulations generate short-term speciation, when mating preferences are also allowed to suffer mutations and acquire selective value...
On the heritability of geographic range sizesThomas J Webb
Biodiversity and Macroecology Group, Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, United Kingdom
Am Nat 161:553-66. 2003....
Global patterns in endemism explained by past climatic changeRoland Jansson
Department of Biological Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
Proc Biol Sci 270:583-90. 2003..palaeoendemics survive and that diverging gene pools persist without going extinct or merging, favouring the evolution of neoendemics...
Speciation along environmental gradientsMichael Doebeli
Department of Zoology, University of British Columbia, Vancouver, Canada V6T 1Z4
Nature 421:259-64. 2003..Our results highlight the importance of local processes of adaptive divergence for geographical patterns of speciation, and caution against pitfalls of inferring past speciation processes from present biogeographical patterns...
Evolutionary biology: Splitting in spaceDiethard Tautz
Nature 421:225-6. 2003
Research Grants
- Impact of Antibiotics and Vaccines on the in vivo Evolution of S. pneumoniaeGarth Ehrlich; Fiscal Year: 2009C'! of S. pneumoniae" 1R01AI01808903953-051-OA1IAI "Impact of Antibiotics and Vaccines on the in vivo Evolution CO) "Impact of Antibiotics and Vaccines on the in vivo Evolution 3...
- The therapeutic potential of maspin in prostate cancerShijie Sheng; Fiscal Year: 2009..Maspin, a highly conserved protein throughout evolution, belongs to the serine protease inhibitor (serpin) superfamily...
- SCCOR in Host Factors in Chronic Lung DiseaseRichard Boucher; Fiscal Year: 2007..and cigarette smoke-exposed lung to mimics of aspects of COPD/CF disease; Project V: Mucus Dehydration and Evolution of COPD Lung Disease (R...
- Vaccination against mucosal HIV clade C transmissionRuth Ruprecht; Fiscal Year: 2007..the virulence of R5 SHIVenvC's, generating a fully heterologous SHIVenvC, and by comparing the molecular evolution of HIV clade C env in infected African mother/infant pairs and in rhesus monkeys infected with SHIV's harboring ..
- Defining evolutionary trajectories: Molecular adaptation to antibiotic resistanceAdil Shamoo; Fiscal Year: 2009..large populations of bacteria, carrying one of three antibiotic resistance genes, to continuous experimental evolution. By varying the conditions of selection during adaptation, antibiotic resistance mediated by changes to the ..
- Evolution of sodium channel genesHarold Zakon; Fiscal Year: 2009..same protein from a number of different organisms to find out which amino acids do NOT change over the course of evolution. Another lesser-used strategy that we employ here is to include sequences from organisms in which that molecule ..
- Evolution of sodium channel genesHarold H Zakon; Fiscal Year: 2010..same protein from a number of different organisms to find out which amino acids do NOT change over the course of evolution. Another lesser-used strategy that we employ here is to include sequences from organisms in which that molecule ..
- Structure, function, and evolution of the Cryptococcus MAT locusJoseph Heitman; Fiscal Year: 2010..Thus, the structure, function, and evolution of the mating-type locus (MAT) and its links to sexual development, virulence, and ecology are of considerable ..
- Structure, function, and evolution of the Cryptococcus MAT locusJoseph Heitman; Fiscal Year: 2009..Thus, the structure, function, and evolution of the mating-type locus (MAT) and its links to sexual development, virulence, and ecology are of considerable ..
- Diversity and evolution of Pseudomonas syringae type III effectors (RO1GM066025) Jeffery L Dangl; Fiscal Year: 2010..This genus of pathogenic bacteria provides an excellent set of genomic and genetic tools to analyze co-evolution of host and pathogen, from the level of genome organization and horizontal gene flow down to the level of the ..
- Modeling Neoplastic Progression in Barrett's EsophagusCarlo Maley; Fiscal Year: 2009..Neoplasms progress to malignancy through a process of clonal evolution. However, the dynamics of that evolution are poorly understood...
- Convergent Molecular Evolution of Moth and Spider SilksNADIA AYOUB; Fiscal Year: 2007..the molecular basis for adaptation is to examine the genetic architecture underlying cases of convergent evolution, the independent evolution of similar phenotypes in distantly related organisms...
- Modeling Neoplastic Progression in Barrett's EsophagusJohn W Pepper; Fiscal Year: 2010..Neoplasms progress to malignancy through a process of clonal evolution. However, the dynamics of that evolution are poorly understood...
- Alcohol Metabolism,Primate Evolution and Paleogenetics. An Inclusive ParadigmSteven A Benner; Fiscal Year: 2010..provide the first example where historical biology is applied to an area of interest to these institutes: the evolution of the response of primates to environmental ethanol...
- Evolution of the Bordetellae from Commensals to PathogensEric Harvill; Fiscal Year: 2009..The historical view of the apparent convergent evolution towards the ability to infect humans is unable to explain this...
- Evolution of the Bordetellae from Commensals to PathogensEric Harvill; Fiscal Year: 2009..The historical view of the apparent convergent evolution towards the ability to infect humans is unable to explain this...
- Evolution of the Bordetellae from Commensals to PathogensEric T Harvill; Fiscal Year: 2010..The historical view of the apparent convergent evolution towards the ability to infect humans is unable to explain this...
- Host and Pathogen Evolution in Lassa FeverPardis Sabeti; Fiscal Year: 2009..by the applicant) Abstract: Disease-causing pathogens are among the most intriguing forces shaping human evolution, as they have a tremendous impact on our genome and themselves evolve over time...
- Functional genetic evolution of human brain and behaviorEric J Vallender; Fiscal Year: 2010This proposal is focused on integrating comparative genetics and molecular evolution with functional neurobiology as a means of generating a better understanding of human neuropsychiatric and addiction disorders and developing better ..
- The Evolution of Malerial Antifiolate ResistanceDaniel Hartl; Fiscal Year: 2009..Although antifolates are affordable and still clinically effective, their use has been compromised by the evolution of drug resistance...
- The Evolution of Malerial Antifiolate ResistanceDaniel Hartl; Fiscal Year: 2007..Although antifolates are affordable and still clinically effective, their use has been compromised by the evolution of drug resistance...
- COMPUTER BASED SEQUENCE ANALYSIS AND RNA VIRUS EVOLUTIONMARCELLA MCCLURE; Fiscal Year: 2000..goal of the proposed research is the analysis of biological sequence data to address the molecular mechanisms of evolution and the origin(s) of all viruses and related genetic elements...
- EVOLUTION OF THE RIBONUCLEASE SUPERFAMILYSteven Benner; Fiscal Year: 2001..The evolution of molecular and biological behavior is set in a historical context by correlating it with the evolution of ..
- Sigma virus in Drosophila: a model system for the evolution of virulenceMarta Wayne; Fiscal Year: 2009..husbandry, extensive natural history, and wealth of genomic tools, is a superb model system for exploring 1) the evolution of virulence in general and 2) contrasting uniparentally vs. biparentally transmitted viruses in particular...
- Sigma virus in Drosophila: a model system for the evolution of virulenceMarta Wayne; Fiscal Year: 2009..husbandry, extensive natural history, and wealth of genomic tools, is a superb model system for exploring 1) the evolution of virulence in general and 2) contrasting uniparentally vs. biparentally transmitted viruses in particular...
- Isolation of ribonucleic acids that are attached to the neuronal membraneTerunaga Nakagawa; Fiscal Year: 2010The origin of life on our planet is widely believed to be the so-called "RNA world". During evolution, before DNA and proteins were part of life there was a world full of RNAs that possess self-replicating enzymatic ability...
- Genetics of Wing and Cell-Size Evolution in NasoniaJohn Werren; Fiscal Year: 2007How new morphologies evolve is a fundamental question in biology. Most morphological evolution involves changes in the size of organs, which is basically achieved in two ways, by changes in cell size and cell number...
- Evolution of Plasmodium vivax and Asian Macaque MalariasANANIAS ALBERTO ESCALANTE; Fiscal Year: 2010..Overall, the proposed investigation aims to understand the role of positive selection in the evolution of proteins expressed during erythrocyte invasion in P. vivax and related species...
- Evolution of Plasmodium vivax and Asian Macaque MalariasAnanias Escalante; Fiscal Year: 2009..Overall, the proposed investigation aims to understand the role of positive selection in the evolution of proteins expressed during erythrocyte invasion in P. vivax and related species...
- Directed Evolution of Adeno-Associated Virus Vectors for Seizure Gene TherapyThomas McCown; Fiscal Year: 2007..Recent developments in AAV directed evolution provide a potential means to circumvent neurosurgical intervention. Maheshri et al...
- Evolution of vertebrate sensory genesJianzhi Zhang; Fiscal Year: 2010..objective of my laboratory is to understand how genetic changes contribute to the survival, adaptation, and evolution of organisms. All organisms live in biotic and abiotic environments that change over time...
