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Genomes and Genes | genetically modified plantsSummarySummary: PLANTS, or their progeny, whose GENOME has been altered by GENETIC ENGINEERING. Top Publications
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GATEWAY vectors for Agrobacterium-mediated plant transformationMansour Karimi
Dept of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology (VIB, Ghent University, K.L. Ledeganckstraat 35, B-9000, Gent, Belgium
Trends Plant Sci 7:193-5. 2002..Because these vectors are generally large, cloning can be time-consuming and laborious. Recently, the GATEWAY conversion technology has provided a fast and reliable alternative to the cloning of sequences into large acceptor plasmids...
A gateway cloning vector set for high-throughput functional analysis of genes in plantaMark D Curtis
Institute of Plant Biology and Zurich Basel Plant Science Centre, University of Zurich, Zollikerstrasse 107, Ch 8008 Zurich, Switzerland
Plant Physiol 133:462-9. 2003..All vectors were derived from pCambia T-DNA cloning vectors, with the exception of a chemically inducible vector, for Agrobacterium sp.-mediated transformation of a wide range of plant species...
FT protein movement contributes to long-distance signaling in floral induction of ArabidopsisLaurent Corbesier
Max Planck Institute for Plant Breeding Research, Carl von Linne Weg 10, D 50829 Cologne, Germany
Science 316:1030-3. 2007..Finally, we provide evidence that FT does not activate an intermediate messenger in leaves. We conclude that FT protein acts as a long-distance signal that induces Arabidopsis flowering...
An enhanced transient expression system in plants based on suppression of gene silencing by the p19 protein of tomato bushy stunt virusOlivier Voinnet
The Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich NR4 7UH, UK
Plant J 33:949-56. 2003....
ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defenseOscar Lorenzo
Departamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología Consejo Superior de Investigaciones Científicas, Campus Universidad Autonoma, 28049 Madrid, Spain
Plant Cell 15:165-78. 2003....
Regulators of PP2C phosphatase activity function as abscisic acid sensorsYue Ma
Lehrstuhl fur Botanik, Technische Universitat Munchen, Am Hochanger 4, D 85354 Freising, Germany
Science 324:1064-8. 2009..Other RCARs also mediated ABA-dependent regulation of ABI1 and ABI2, consistent with a combinatorial assembly of receptor complexes...
Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expressionH Abe
Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, Ibaraki, Japan
Plant Cell 9:1859-68. 1997..These results indicate that both the rd22BP1 (MYC) and ATMYB2 (MYB) proteins function as transcriptional activators in the dehydration- and ABA-inducible expression of the rd22 gene...
A pair of related genes with antagonistic roles in mediating flowering signalsY Kobayashi
Department of Botany, Graduate School of Science, Kyoto University, Sakyo ku, Kyoto 606 8502, Japan
Science 286:1960-2. 1999..FT acts in part downstream of CO and mediates signals for flowering in an antagonistic manner with its homologous gene, TERMINAL FLOWER1 (TFL1)...
Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoterLam Son Phan Tran
Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
Plant Cell 16:2481-98. 2004..However, erd1 was not upregulated in the transgenic plants. Other interacting factors may be necessary for the induction of erd1 in Arabidopsis under stress conditions...
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expressionJoseph G Dubouzet
Biological Resources Division, Japan International Research Center for Agricultural Sciences (JIRCAS, 1-1 Ohwashi, Tsukuba, Ibaraki 305-8686, Japan
Plant J 33:751-63. 2003..OsDREB1A is potentially useful for producing transgenic monocots that are tolerant to drought, high-salt, and/or cold stresses...
Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expressionZ Y Wang
Department of Molecular, Cell, and Developmental Biology, UCLA, Los Angeles, California 90095 1606, USA
Cell 93:1207-17. 1998..Furthermore, the expression of both endogenous CCA1 and the related LHY gene was suppressed. Our results suggest that CCA1 is a part of a feedback loop that is closely associated with the circadian clock in Arabidopsis...
The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factorR R Finkelstein
Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, California 93106, USA
Plant Cell 12:599-609. 2000..Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages...
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signalingHiroshi Abe
Biological Resources Division, Japan International Research Center for Agricultural Sciences, 1 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
Plant Cell 15:63-78. 2003..These results indicate that both AtMYC2 and AtMYB2 proteins function as transcriptional activators in ABA-inducible gene expression under drought stress in plants...
The oxylipin signal jasmonic acid is activated by an enzyme that conjugates it to isoleucine in ArabidopsisPaul E Staswick
Department of Agronomy and Horticulture, University of Nebraska, Lincoln, Nebraska 68583, USA
Plant Cell 16:2117-27. 2004..Plant hormone activation by conjugation to amino acids and the enzymes involved in their formation were previously unknown...
Arabidopsis LEAFY COTYLEDON1 is sufficient to induce embryo development in vegetative cellsT Lotan
Division of Biological Sciences, University of California, Davis 95616, USA
Cell 93:1195-205. 1998..Our results suggest that LEC1 is an important regulator of embryo development that activates the transcription of genes required for both embryo morphogenesis and cellular differentiation...
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defenseAngelique Deleris
Institut de Biologie Moleculaire des Plantes, CNRS Unité Propre de Recherche UPR 2357, 12, rue du Général Zimmer, 67084 Strasbourg Cedex, France
Science 313:68-71. 2006..These findings define a molecular framework for studying antiviral silencing and defense in plants...
Distinct roles of CONSTANS target genes in reproductive development of ArabidopsisA Samach
John Innes Centre, Norwich NR4 7UH, UK
Science 288:1613-6. 2000..The SOC1 and FT genes are also regulated by a second flowering-time pathway that acts independently of CO. Thus, early target genes of CO define common components of distinct flowering-time pathways...
Construct design for efficient, effective and high-throughput gene silencing in plantsS V Wesley
CSIRO Plant Industry, PO Box 1600 Canberra ACT 2601, Australia
Plant J 27:581-90. 2001..This system may facilitate the large-scale determination and discovery of plant gene functions in the same way as RNAi is being used to examine gene function in Caenorhabditis elegans...
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAsN Baumberger
Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, United Kingdom
Proc Natl Acad Sci U S A 102:11928-33. 2005..Based on sequence similarity, we predict that other Arabidopsis AGOs might have a similar catalytic activity but recruit different subsets of siRNAs or miRNAs...
The Arabidopsis CORONATINE INSENSITIVE1 protein is a jasmonate receptorJianbin Yan
Department of Biological Sciences, Tsinghua University, Beijing 100084, China
Plant Cell 21:2220-36. 2009..Taken together, these results demonstrate that COI1 directly binds to JA-Ile and COR and serves as a receptor for jasmonate...
The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genesAgim Ballvora
, , , Germany
Plant J 30:361-71. 2002..R1 is located within a hot spot for pathogen resistance on potato chromosome V. In comparison to the susceptibility allele, the resistance allele at the R1 locus represents a large insertion of a functional R gene...
A Pseudomonas syringae type III effector suppresses cell wall-based extracellular defense in susceptible Arabidopsis plantsPaula Hauck
Department of Energy Plant Research Laboratory and Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA
Proc Natl Acad Sci U S A 100:8577-82. 2003..AvrPto is therefore one of the long postulated suppressors of an salicylic acid-independent, cell wall-based defense that is aimed at hrp mutant bacteria...
Antisense LOX expression increases herbivore performance by decreasing defense responses and inhibiting growth-related transcriptional reorganization in Nicotiana attenuataRayko Halitschke
Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, , D-07745 Jena, Germany
Plant J 36:794-807. 2003..By genetically manipulating signaling in a plant with a well-characterized ecology, we demonstrate that the complex phenotypic changes that mediate herbivore resistance are controlled by a specific part of the oxylipin cascade...
The putative plasma membrane Na(+)/H(+) antiporter SOS1 controls long-distance Na(+) transport in plantsHuazhong Shi
Department of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA
Plant Cell 14:465-77. 2002..We present a model in which SOS1 functions in retrieving Na(+) from the xylem stream under severe salt stress, whereas under mild salt stress it may function in loading Na(+) into the xylem...
Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in riceKazuo Nakashima
Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
Plant J 51:617-30. 2007..We conclude that OsNAC6 may serve as a useful biotechnological tool for the improvement of stress tolerance in various kinds of plants...
An ancient R gene from the wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomatoEdwin van der Vossen
Plant Research International BV, PO Box 16, 6700 AA Wageningen, The Netherlands
Plant J 36:867-82. 2003..These data suggest that Rpi-blb1 is relatively old and may be subject to balancing selection...
OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signalingDeyun Qiu
National Key Laboratory of Crop Genetic Improvement, National Center for Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China
Mol Plant Microbe Interact 20:492-9. 2007..Furthermore, OsWRKY13 will provide a transgenic tool for engineering wider-spectrum and whole-growth-stage resistance rice in breeding programs...
AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root developmentXin Jian He
National Key Lab of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
Plant J 44:903-16. 2005..AtNAC2 also promoted or inhibited downstream gene expressions. These results indicate that AtNAC2 may be a transcription factor incorporating the environmental and endogenous stimuli into the process of plant lateral root development...
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root developmentHui Shan Guo
Laboratory of Molecular Cell Biology, Temasek Life Science Laboratory, National University of Singapore, 117604 Singapore
Plant Cell 17:1376-86. 2005..Moreover, the cleavage-resistant form of NAC1 mRNA was unaffected by auxin treatment. Our results indicate that auxin induction of miR164 provides a homeostatic mechanism to clear NAC1 mRNA to downregulate auxin signals...
CONSTANS acts in the phloem to regulate a systemic signal that induces photoperiodic flowering of ArabidopsisHailong An
Max Planck Institute for Plant Breeding, Carl von Linne Weg 10, D-50829 Cologne, Germany
Development 131:3615-26. 2004....
Trifurcate feed-forward regulation of age-dependent cell death involving miR164 in ArabidopsisJin Hee Kim
Division of Molecular Life Sciences, Pohang University of Science and Technology, Hyoja Dong, Pohang, Kyungbuk, 790 784, Republic of Korea
Science 323:1053-7. 2009..The trifurcate feed-forward pathway involving ORE1, miR164, and EIN2 provides a highly robust regulation to ensure that aging induces cell death in Arabidopsis leaves...
The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in ArabidopsisIain Searle
Max Planck Institute for Plant Breeding, D 50829 Cologne, Germany
Genes Dev 20:898-912. 2006..Thus vernalization relieves transcriptional repression of key regulatory genes in both the leaf and meristem, allowing production of systemic signals in the leaves and conferring competence on the meristem to respond to these signals...
Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blightJunqi Song
Department of Horticulture, Biotechnology Center, University of Wisconsin, Madison, WI 53706, USA
Proc Natl Acad Sci U S A 100:9128-33. 2003..Our results also demonstrate that LR-PCR is a valuable approach to isolate genes that cannot be maintained in the bacterial artificial chromosome system...
Systemic Agrobacterium tumefaciens-mediated transfection of viral replicons for efficient transient expression in plantsSylvestre Marillonnet
Icon Genetics, Biozentrum Halle, Weinbergweg 22, D-06120 Halle (Saale, Germany
Nat Biotechnol 23:718-23. 2005..tumefaciens, the high expression yield obtained with viral vectors, and the post-translational capabilities of a plant), does not require genetic modification of plants and is faster than other existing methods...
Quantitative profiling of polar glycerolipid species from organs of wild-type Arabidopsis and a phospholipase Dalpha1 knockout mutantShivakumar Pattada Devaiah
Department of Biochemistry, Kansas State University, Manhattan, KS 66506, USA
Phytochemistry 67:1907-24. 2006....
ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germinationLuis Lopez-Molina
Laboratory of Plant Molecular Biology, Laboratory for Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, 1230 York Avenue, New York, NY 10021-6399, USA
Plant J 32:317-28. 2002..Although ABI5 is consistently located in the nucleus, chromosomal immunoprecipitation (ChIP) experiments revealed that ABA increases ABI5 occupancy on the AtEm6 promoter...
Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activityU Brand
Institut fur Entwicklungsbiologie, Universitat zu Koln, Gyrhofstrabetae 17, D 50923 Köln, Germany
Science 289:617-9. 2000..We also demonstrate that the CLV pathway acts by repressing the activity of the transcription factor WUSCHEL, an element of the positive, stem cell-promoting pathway...
Induction of protein secretory pathway is required for systemic acquired resistanceDong Wang
Developmental, Cell and Molecular Biology Group, Department of Biology, Post Office Box 91000, Duke University, Durham, NC 27708, USA
Science 308:1036-40. 2005..Activation of this cis-element is controlled by a transcription factor that is translocated into the nucleus upon SAR induction...
Modular cloning in plant cellsMansour Karimi
Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology (VIB, Ghent University, Technologiepark 927, B-9052 Gent, Belgium
Trends Plant Sci 10:103-5. 2005..In addition, novel binary T-DNA vectors are now available to assemble multiple DNA fragments simultaneously, which greatly facilitate plant cell and protein engineering...
Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10Richard V Espley
HortResearch, Mt Albert Research Centre, Private Bag 92169, Auckland, New Zealand
Plant J 49:414-27. 2007..Characterization of MdMYB10 has implications for the development of new varieties through classical breeding or a biotechnological approach...
Signal transduction in maize and Arabidopsis mesophyll protoplastsJ Sheen
Department of Molecular Biology, Massachusetts General Hospital, Wellman 11, 50 Blossom Street, Boston, Massachusetts 02114, USA
Plant Physiol 127:1466-75. 2001....
Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expressionYoh Sakuma
Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
Plant Cell 18:1292-309. 2006..The region between DREB2A residues 136 and 165 plays a role in the stability of this protein in the nucleus, which is important for protein activation...
pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformationR P Hellens
John Innes Centre, Norwich Research Park, Colney, UK
Plant Mol Biol 42:819-32. 2000..Information on the pGreen plasmid system is supplemented by an Internet site (http://www.pgreen.ac.uk) through which comprehensive information, protocols, order forms and lists of different pGreen marker gene permutations can be found...
P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unctionKristin D Kasschau
Center for Gene Research and Biotechnology and Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
Dev Cell 4:205-17. 2003..The basis for TuMV- and other virus-induced disease in plants may be explained, at least partly, by interference with miRNA-controlled developmental pathways that share components with the antiviral RNA-silencing pathway...
An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse geneticsMario G Rosso
GABI-Kat, Max Planck Institute for Plant Breeding Research, , , Germany
Plant Mol Biol 53:247-59. 2003..Finally, the functionality of the GABI-Kat population was demonstrated by exemplary confirmation of several new transparent testa alleles, as well as a number of other mutants, which were identified on the basis of the FST data...
FLOWERING LOCUS T protein may act as the long-distance florigenic signal in the cucurbitsMing Kuem Lin
Section of Plant Biology, College of Biological Sciences, University of California, Davis, California 95616, USA
Plant Cell 19:1488-506. 2007..maxima FT, but not FT mRNA, crossed the graft union in the phloem translocation stream. Collectively, these studies are consistent with FT functioning as a component of the florigenic signaling system in the cucurbits...
MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisJianli Zhou
Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA
Plant Cell 21:248-66. 2009..Together, our results indicate that MYB58 and MYB63 are specific transcriptional activators of lignin biosynthesis in the SND1-mediated transcriptional network regulating secondary wall formation...
Ligand-induced endocytosis of the pattern recognition receptor FLS2 in ArabidopsisSilke Robatzek
Zurich Basel Plant Science Center, Botanical Institute, University of Basel, 4056 Basel, Switzerland
Genes Dev 20:537-42. 2006..We propose that plant cells regulate pathogen-associated molecular pattern (PAMP)-mediated PRR activities by subcellular compartmentalization...
WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in ArabidopsisSébastien Baud
Laboratoire de Biologie des Semences, IJPB, UMR 204 INRA AgroParis Tech, F 78026 Versailles, France
Plant J 50:825-38. 2007..thaliana seeds. In addition, they exemplify how metabolic and developmental processes affecting the developing embryo can be coordinated at the molecular level...
In planta engineering of viral RNA replicons: efficient assembly by recombination of DNA modules delivered by AgrobacteriumSylvestre Marillonnet
Icon Genetics, Biozentrum Halle, Weinbergweg 22, D-06120 Halle/Saale, Germany
Proc Natl Acad Sci U S A 101:6852-7. 2004....
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcriptionDaniel Zilberman
Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, Seattle, Washington 98109, USA
Nat Genet 39:61-9. 2007..Our results indicate that genic transcription and DNA methylation are closely interwoven processes...
A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thalianaK Meyer
Institute of Plant Sciences, Swiss Federal Institute of Technology, Zurich
Science 264:1452-5. 1994..Thus, the control of the phosphorylation state of cell signaling components by the ABI1 product could mediate pleiotropic hormone responses...
Dof domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plantsShuichi Yanagisawa
Research Institute for Bioresources, Okayama University, Chuo 2 20 1, Kurashiki, 710 0046 Japan
Plant Cell Physiol 45:386-91. 2004..Here I summarize our current knowledge about Dof domain proteins...
Specific effects of microRNAs on the plant transcriptomeRebecca Schwab
Department of Molecular Biology, Max Planck Institute for Developmental Biology, , Germany
Dev Cell 8:517-27. 2005..This finding unifies the view of plant miRNA action...
Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genesMilo J Aukerman
E I duPont de Nemours and Company, Agriculture and Nutrition, Newark, Delaware 19711, USA
Plant Cell 15:2730-41. 2003..Gain-of-function and loss-of-function analyses indicate that two of the AP2-like target genes normally act as floral repressors, supporting the notion that miR172 regulates flowering time by downregulating AP2-like target genes...
Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factorsSilvia Fornalé
Departament de Genetica Molecular, Laboratori de Genètica Molecular Vegetal, CSIC IRTA, Jordi Girona 18 26, 08034, Barcelona, Spain
Plant Mol Biol 62:809-23. 2006..thaliana and the maize COMT genes. Furthermore, the over-expression of ZmMYB31 and ZmMYB42 also affect the expression of other genes of the lignin pathway and produces a decrease in lignin content of the transgenic plants...
LEAFY COTYLEDON1 controls seed storage protein genes through its regulation of FUSCA3 and ABSCISIC ACID INSENSITIVE3Yasuaki Kagaya
Life Science Research Center, Mie University, Tsu, 514 8507 Japan
Plant Cell Physiol 46:399-406. 2005..From these data, we suggest that LEC1 controls the expression of the SSP genes in a hierarchical manner, which involves ABI3 and FUS3...
Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in ArabidopsisQ Liu
Biological Resources Division, Japan International Research Center for Agricultural Sciences JIRCAS, Ministry of Agriculture, Forestry, and Fisheries, 2 1 Ohwashi, Tsukuba, Ibaraki 305 8686, Japan
Plant Cell 10:1391-406. 1998..These results indicate that two independent families of DREB proteins, DREB1 and DREB2, function as trans-acting factors in two separate signal transduction pathways under low-temperature and dehydration conditions, respectively...
SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in ArabidopsisKenji Miura
Center for Plant Environmental Stress Physiology, Purdue University, West Lafayette, Indiana 47907 2010, USA
Plant Cell 19:1403-14. 2007..SIZ1-dependent sumoylation of ICE1 may activate and/or stabilize the protein, facilitating expression of CBF3/DREB1A and repression of MYB15, leading to low temperature tolerance...
Photoreceptor regulation of CONSTANS protein in photoperiodic floweringFederico Valverde
Max Planck Institute for Plant Breeding, Carl-von-Linne Weg 10, D-50829 Cologne, Germany
Science 303:1003-6. 2004..This layer of regulation refines the circadian rhythm in CO messenger RNA and is central to the mechanism by which day length controls flowering...
The biosynthesis and nutritional uses of carotenoidsPaul D Fraser
School of Biological Sciences, Royal Holloway, University of London, Egham, Surrey TW20 0EX, UK
Prog Lipid Res 43:228-65. 2004....
Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4Gustavo Javier Acevedo-Hernández
Departamento de Ingeniería Genética de Plantas, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional Unidad Irapuato, Apartado Postal 629, Irapuato, Guanajuato 36500, Mexico
Plant J 43:506-19. 2005..This phylogenetically conserved promoter feature probably reflects a common regulatory mechanism and identifies a point of convergence between light- and sugar-signaling pathways...
Molecular farming in plants: host systems and expression technologyRichard M Twyman
Department of Biology, University of York, Heslington, York YO10 5DD, UK
Trends Biotechnol 21:570-8. 2003
Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in riceHonghong Hu
National Center of Plant Gene Research Wuhan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
Plant Mol Biol 67:169-81. 2008..These data suggest SNAC2 is a novel stress responsive NAC transcription factor that possesses potential utility in improving stress tolerance of rice...
Problem formulation in the environmental risk assessment for genetically modified plantsJeffrey D Wolt
Biosafety Institute for Genetically Modified Agricultural Products, Iowa State University, Ames, IA, USA
Transgenic Res 19:425-36. 2010..This paper is the product of an international expert group convened by the International Life Sciences Institute (ILSI) Research Foundation...
Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expressionYoh Sakuma
Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113 8657, Japan
Proc Natl Acad Sci U S A 103:18822-7. 2006..Thermotolerance was significantly increased in plants overexpressing DREB2A CA and decreased in DREB2A knockout plants. Collectively, these results indicate that DREB2A functions in both water and HS-stress responses...
Altered circadian rhythms regulate growth vigour in hybrids and allopolyploidsZhongfu Ni
Section of Molecular Cell and Developmental Biology, The University of Texas at Austin, One University Station, A 4800, Austin, Texas 78712, USA
Nature 457:327-31. 2009..The causal effects of CCA1 on output traits suggest that hybrids and allopolyploids gain advantages from the control of circadian-mediated physiological and metabolic pathways, leading to growth vigour and increased biomass...
Infection and coaccumulation of tobacco mosaic virus proteins alter microRNA levels, correlating with symptom and plant developmentA A Bazzini
Instituto de Biotecnologia, Centro de Investigación en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnología Agropecuaria Castelar, Las Cabañas y Los Reseros, B1712WAA Buenos Aires, Argentina
Proc Natl Acad Sci U S A 104:12157-62. 2007..This work presents evidence that virus infection and viral proteins influence miRNA balance without affecting posttranscriptional gene silencing and contributes to the hypothesis that viruses exploit miRNA pathways during pathogenesis...
Involvement of the MADS-box gene ZMM4 in floral induction and inflorescence development in maizeOlga N Danilevskaya
Pioneer Hi Bred International, Inc, A DuPont Company, Johnston, Iowa 50131, USA
Plant Physiol 147:2054-69. 2008..Our results suggest ZMM4 may play roles in both floral induction and inflorescence development...
A phenylalanine in DGAT is a key determinant of oil content and composition in maizePeizhong Zheng
Pioneer Hi Bred International Inc, A DuPont Company, 7300 NW 62nd Avenue, PO Box 1004, Johnston, Iowa 50131, USA
Nat Genet 40:367-72. 2008..This work provides insights into the molecular basis of natural variation of oil and oleic-acid contents in plants and highlights DGAT as a promising target for increasing oil and oleic-acid contents in other crops...
Tissue-dependent enhancement of transgene expression by introns of replacement histone H3 genes of ArabidopsisN Chaubet-Gigot
, CNRS, Universit Louis Pasteur, Strasbourg, France
Plant Mol Biol 45:17-30. 2001..Such factors appear most abundant in roots...
The spen family protein FPA controls alternative cleavage and polyadenylation of RNACsaba Hornyik
Genetics, SCRI, Invergowrie, Dundee, DD2 5DA, Scotland, UK
Dev Cell 18:203-13. 2010..Transcript readthrough accounts for the absence of changes in DNA methylation and siRNA abundance at AtSN1 in fpa mutants, and this may explain other examples of epigenetic transitions not associated with chromatin modification...
High-throughput fluorescent tagging of full-length Arabidopsis gene products in plantaGuo-Wei Tian
Department of Biochemistry and Cell Biology, State University of New York, Stony Brook, New York 11794-5215, USA
Plant Physiol 135:25-38. 2004....
Identification of a gene associated with Bt resistance in Heliothis virescensL J Gahan
Department of Biological Sciences, Clemson University, Clemson, SC 29634, USA
Science 293:857-60. 2001..Our findings enable efficient DNA-based screening for resistant heterozygotes by directly detecting the recessive allele...
Nicotiana benthamiana: its history and future as a model for plant-pathogen interactionsMichael M Goodin
Department of Plant Pathology, University of Kentucky, Lexington 40546, USA
Mol Plant Microbe Interact 21:1015-26. 2008..Finally, we propose that N. benthamiana is well situated to become a premier plant cell biology model, particularly for the virology community, who as a group were the first to recognize the potential of this unique Australian native...
The magnesium-chelatase H subunit binds abscisic acid and functions in abscisic acid signaling: new evidence in ArabidopsisFu Qing Wu
State Key Laboratory of Plant Physiology and Biochemistry, China Agricultural University, Beijing 100094, China
Plant Physiol 150:1940-54. 2009....
Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like proteinXinli Sun
National Key Laboratory of Crop Genetic Improvement, National Center of Crop Molecular Breeding, Huazhong Agricultural University, Wuhan 430070, China
Plant J 37:517-27. 2004..These results suggest that the resistance conferred by Xa26 is influenced by the genetic background...
A plasmodesmata-associated beta-1,3-glucanase in ArabidopsisAmit Levy
Department of Plant Sciences, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 69978, Israel
Plant J 49:669-82. 2007..Taken together, we suggest that AtBG_ppap is a Pd-associated membrane protein involved in plasmodesmal callose degradation, and functions in the gating of Pd...
Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene familyBao Cai Tan
Plant Molecular and Cellular Biology Program, University of Florida, Gainesville, FL 32611, USA
Plant J 35:44-56. 2003..In addition, differential membrane-binding capacity of AtNCEDs is a potential means of post-translational regulation of NCED activity...
Analysis of interactions among the CLAVATA3 receptors reveals a direct interaction between CLAVATA2 and CORYNE in ArabidopsisYingfang Zhu
Key Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100049, China
Plant J 61:223-33. 2010..Taken together, our results add direct evidence to the newly proposed two-parallel receptor pathways model and therefore provide new insights into the CLV3 signaling pathway...
Down-regulating alpha-galactosidase enhances freezing tolerance in transgenic petuniaJoyce C Pennycooke
Department of Horticulture and Landscape Architecture, Colorado State University, Fort Collins, CO 80523, USA
Plant Physiol 133:901-9. 2003..These results suggest that engineering raffinose metabolism by transformation with alpha-Gal provides an additional method for improving the freezing tolerance of plants...
Plant-based production of biopharmaceuticalsRainer Fischer
Institute for Molecular Biotechnology, Biology VII, RWTH Aachen, Worringerweg 1, 52074 Aachen, Germany
Curr Opin Plant Biol 7:152-8. 2004..There has also been significant success in tackling some of the limitations of plant bioreactors, such as low yields and inconsistent product quality, that have limited the approval of plant-derived pharmaceuticals...
Geminiviruses and RNA silencingRamachandran Vanitharani
International Laboratory for Tropical Agricultural Biotechnology, Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO 63132, USA
Trends Plant Sci 10:144-51. 2005....
A PINOID-dependent binary switch in apical-basal PIN polar targeting directs auxin effluxJiri Friml
Developmental Genetics, Center for Molecular Biology of Plants, University Tübingen, Auf der Morgenstelle 3, D 72076 Tubingen, Germany
Science 306:862-5. 2004..Our results show that a PINOID-dependent binary switch controls PIN polarity and mediates changes in auxin flow to create local gradients for patterning processes...
Molecular basis of N-acetylglucosaminyltransferase I deficiency in Arabidopsis thaliana plants lacking complex N-glycansRichard Strasser
Department für Angewandte Pflanzenwissenschaften und Pflanzenbiotechnologie, Institut für Angewandte Genetik und Zellbiologie, Universitat fur Bodenkultur Wien, Muthgasse 18, A 1190 Wien, Austria
Biochem J 387:385-91. 2005..These results indicate that the complete deficiency of GnTI activity in cgl plants is mainly due to the additional N-glycan, which appears to interfere with the proper folding of the enzyme...
Cell-to-cell movement of potato potexvirus X is dependent on suppression of RNA silencingElizabeth H Bayne
The Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich NR4 7UH, UK
Plant J 44:471-82. 2005..It is possible, based on analyses of short interfering RNA accumulation, that P25 suppresses silencing by interfering with either assembly or function of the effector complexes of RNA silencing...
Early infection of scutellum tissue with Agrobacterium allows high-speed transformation of riceSeiichi Toki
Plant Genetic Engineering Research Unit, National Institute of Agrobiological Sciences, 2 1 2 Kannondai, Tsukuba, Ibaraki 305 8602, Japan
Plant J 47:969-76. 2006..Our new system should reduce the somaclonal variation accompanying prolonged culture of rice cells in the dedifferentiated state and facilitate the molecular breeding of rice...
Cellular and subcellular localization of phototropin 1Koji Sakamoto
Department of Plant Biology, Carnegie Institution of Washington, 260 Panama Street, Stanford, CA 94305, USA
Plant Cell 14:1723-35. 2002..Possible relationships between observed phot1 distribution and the various physiological responses activated by blue light are discussed...
RNA silencing and the mobile silencing signalSizolwenkosi Mlotshwa
Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
Plant Cell 14:S289-301. 2002
Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylemDirk Hamburger
, , , CH-1015 Lausanne, Switzerland
Plant Cell 14:889-902. 2002..The Arabidopsis genome contains 10 additional genes showing homology with PHO1. Thus, PHO1 defines a novel class of proteins involved in ion transport in plants...
Production of a monoclonal antibody in plants with a humanized N-glycosylation patternMatthias Schähs
Institute of Applied Genetics and Cell Biology, BOKU Wien, Austria
Plant Biotechnol J 5:657-63. 2007..Our results demonstrate the feasibility of a knockout strategy for N-glycan engineering of plants towards mammalian-like structures, thus providing a significant improvement in the use of plants as an expression platform...
Agrobacterium rhizogenes-transformed roots of Medicago truncatula for the study of nitrogen-fixing and endomycorrhizal symbiotic associationsA Boisson-Dernier
, INRA-CNRS UMR215, Castanet-Tolosan, France
Mol Plant Microbe Interact 14:695-700. 2001..Our results suggest that M. truncatula hairy roots represent a particularly attractive system with which to study endosymbiotic associations in transgenically modified roots...
High-yield production of a human therapeutic protein in tobacco chloroplastsJ M Staub
Monsanto Company, 700 Chesterfield Village Parkway North, St Louis, MO 63198, USA
Nat Biotechnol 18:333-8. 2000..The results indicate that chloroplasts are a highly efficient vehicle for the potential production of pharmaceutical proteins in plants...
PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clockNorihito Nakamichi
RIKEN Plant Science Center, Plant Productivity Systems Research Group, Tsurumi, Yokohama 230 0045, Japan
Plant Cell 22:594-605. 2010..These results suggest that the repressor activities of PRR9, PRR7, and PRR5 on the CCA1 and LHY promoter regions constitute the molecular mechanism that accounts for the role of these proteins in the feedback loop of the circadian clock...
A plant miRNA contributes to antibacterial resistance by repressing auxin signalingLionel Navarro
Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich NR4 7UH, UK
Science 312:436-9. 2006..Repression of auxin signaling restricts P. syringae growth, implicating auxin in disease susceptibility and miRNA-mediated suppression of auxin signaling in resistance...
CLAVATA1 dominant-negative alleles reveal functional overlap between multiple receptor kinases that regulate meristem and organ developmentAnne Dievart
Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor 48109 1048, USA
Plant Cell 15:1198-211. 2003..We propose the presence of multiple receptors that regulate meristem development in a functionally related manner whose interactions are driven by the extracellular domains and whose activation requires the kinase domain...
Cytokinin-dependent photorespiration and the protection of photosynthesis during water deficitRosa M Rivero
Department Plant Sciences, University of California, Davis, California 95616, USA
Plant Physiol 150:1530-40. 2009..Moreover, the increase in transcripts indicated a cytokinin-induced elevation in photorespiration, suggesting the contribution of photorespiration in the protection of photosynthetic processes and its beneficial role during water stress...
Geminivirus AL2 and L2 proteins interact with and inactivate SNF1 kinaseLinhui Hao
Department of Molecular Genetics, Plant Biotechnology Center, The Ohio State University, Columbus, Ohio 43210, USA
Plant Cell 15:1034-48. 2003..They also indicate that geminiviruses are able to modify host metabolism to their own advantage, and they provide a molecular link between metabolic status and inherent susceptibility to viral pathogens...
Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expressionFeng Qin
Biological Resources Division, Japan International Research Center for Agricultural Sciences, Tsukuba, Ibaraki 305 8686, Japan
Plant Cell 20:1693-707. 2008..These results suggest that DRIP1 and DRIP2 act as novel negative regulators in drought-responsive gene expression by targeting DREB2A to 26S proteasome proteolysis...
Functional analysis of Arabidopsis ethylene-responsive element binding protein conferring resistance to Bax and abiotic stress-induced plant cell deathTaro Ogawa
Institute of Molecular and Cellular Biosciences, The University of Tokyo, Tokyo 113 0032, Japan
Plant Physiol 138:1436-45. 2005..Up-regulation of defense genes was observed in transgenic Arabidopsis plants overexpressing AtEBP. Based on the analysis of mRNA accumulation in ethylene-related mutants, the position of AtEBP in signaling pathway is presented...
Constitutive expression of Arabidopsis NPR1 confers enhanced resistance to the early instars of Spodoptera litura in transgenic tobaccoGargi Meur
School of Life Sciences, University of Hyderabad, Hyderabad 500046, India
Physiol Plant 133:765-75. 2008..We show in this communication that heterologous expression of AtNPR1 provides enhanced resistance to early larval populations of the herbivore, Spodoptera in transgenic tobacco plants...
Research Grants
- Expression of Human Therapeutic Proteins in ChloroplastsHenry Daniell; Fiscal Year: 2005..Large scale and low cost production via transgenic chloroplasts should provide treatment to patients at an affordable cost and tobacco farmers alternate uses for this hazardous crop. ..
- Artemisinin Biosynthesis: Control of TranscriptionPamela Weathers; Fiscal Year: 2007..The proposed study is a first step in helping us understand how to control artemisinin's biosynthesis to ultimately increase the production of this drug, and others that are chemically similar, in low cost field-grown plants. ..
- Rhabdovirus phosphoproteins: RNA silencing and complex formationMichael Goodin; Fiscal Year: 2007....
- Mammalian Lactoferrin Receptors: Structure and FunctionBo Lonnerdal; Fiscal Year: 2007..Overall, our understanding of the physiological significance of Lf and its receptor will be increased. ..
- Expression of Human Therapeutic Proteins in Transgenic Tobacco ChloroplastsHenry Daniell; Fiscal Year: 2006..Successful completion of these studies would make transgenic chloroplasts ideal bioreactors for the production of safe and less expensive therapeutic proteins and open the door for in depth studies of membrane proteins. ..
- Expression of Human Therapeutic Proteins in Transgenic Tobacco ChloroplastsHenry Daniell; Fiscal Year: 2010..Successful completion of these studies would make transgenic chloroplasts ideal bioreactors for the production of safe and less expensive therapeutic proteins and open the door for in depth studies of membrane proteins. ..
- Expression of Human Therapeutic Proteins in Transgenic Tobacco ChloroplastsHenry Daniell; Fiscal Year: 2009..Successful completion of these studies would make transgenic chloroplasts ideal bioreactors for the production of safe and less expensive therapeutic proteins and open the door for in depth studies of membrane proteins. ..
- Drosophila Transgenic RNAi Resource ProjectNorbert Perrimon; Fiscal Year: 2009....
- Functional Genomic analysis using RNAi screen in DrosophilaNorbert Perrimon; Fiscal Year: 2010....
- DOSAGE COMPENSATION IN DROSOPHILAJames A Birchler; Fiscal Year: 2010..The single active X chromosome in humans of both males and females must be up-regulated for viability. The proposed project will examine the type of mechanism responsible for this up-regulation. ..
- Development and Testing of a Novel Neuroprotective DrugDavid Schubert; Fiscal Year: 2006..The results from these studies will determine the therapeutic potential of this novel compound. ..
- Network analysis of Signal TransductionNorbert Perrimon; Fiscal Year: 2010..The success of this application will provide a benchmark for reconstructing signaling networks on a global scale. ..
- Mucosal Vaccines for PlagueDavid Pascual; Fiscal Year: 2006..pestis challenge. From these studies, we will produce efficacious vaccines to plague, as well as a supporting vaccine regimen, that will confer protective immunity in the mucosal and systemic immune compartments. ..
- Regulation of APP Degradation and ABeta SecretionDavid Schubert; Fiscal Year: 2007..In addition, understanding how cells regulate the degradation of proteins is critical to the study of a wide range of diseases, particularly those in the nervous system that are characterized by the intracellular protein accumulation. ..
- MUCOSAL IMMUNITY ELICITED BY SALMONELLA VACCINE DELIVERYDavid Pascual; Fiscal Year: 2009..Thus, from these studies we will learn the specific mechanisms induced by this anti-inflammatory vaccine. ..
- Mucosal Lymphocyte Homing in the Head and NeckDavid Pascual; Fiscal Year: 2007..n. challenge with CT. From this work, we will learn how routes of immunizations can be used to effectively target vaccines to nonintestinal mucosal sites. ..
- Characterization of a virus-activated RNA-induced silencing complex(RISC)HERMAN SCHOLTHOF; Fiscal Year: 2007..Second, since virus infections produce high amounts of small RNAs (i.e. siRNAs); they represent useful model systems towards improving new strategies for therapeutic administration of high dosages of siRNAs. ..
- MUCOSAL IMMUNITY ELICITED BY SALMONELLA VACCINE DELIVERYDavid Pascual; Fiscal Year: 2007..Thus, from these studies we will learn the specific mechanisms induced by this anti-inflammatory vaccine. ..
- High-throughput screening assay development for axonopathic neurodegerationNorbert Perrimon; Fiscal Year: 2006..The long term goal of this work is thus to understand better the causes of axonal destruction in neurodegenerative diseases, and to find drugs that can slow or prevent axonal degeneration from occurring. ..
- Host factors involved in bacterial pathogenesisNorbert Perrimon; Fiscal Year: 2007..tuberculosis and its human host. ..
- Pan-Lipoxygenase Inhibitors for CNS DiseaseDAVID R SCHUBERT; Fiscal Year: 2010..To push these drugs to the clinic and to identify more and perhaps better therapeutic targets, we need to understand exactly how these drugs function, and that is the goal of this proposal. ..
- STRUCTURE AND FUNCTION OF AN RNA POL II CTD PHOSPHATASEJAMES OMICHINSKI; Fiscal Year: 2002..In addition, our studies will provide new insights into how disruptions in the control of transcriptional regulation may occur in many forms of human cancer and viral infections. ..
- PHYSIOLOGY OF NERVE, GLIAL, AND MUSCLE CELL LINESDavid Schubert; Fiscal Year: 1980..The role of extracellular substrate attached material in cell-cell and cell-substratum adhesion will also be studied. ..
- PHYSIOLOGY OF NERVE, GLIAL AND MUSCLE CELL LINESDavid Schubert; Fiscal Year: 1992..The extracellular molecules released by regenerating sciatic nerve in vivo will be studied with respect to their effects on Schwann cell migraton, adhesion, and differentiation...
- PHYSIOLOGY OF NERVE, GLIAL, AND MUSCLE CELL LINESDavid Schubert; Fiscal Year: 1999..The experiments in this proposal should help define the role of protein growth factors in the developing nervous system. Hopefully, this information will lead to a treatment for some neurodegenerative diseases and CNS trauma. ..
- MEMBRANE FUNCTION IN MUTANTS OF CAENORHABDITIS ELEGANSJohn Browse; Fiscal Year: 2004..Quantitative measures of low-temperature performance and thermotolerance of the range of desaturase mutants will be correlated with fatty acid composition and measurements of membrane fluidity. ..
- High-throughput screen:Listeria infection (RMI)Norbert Perrimon; Fiscal Year: 2004....
- PHYSIOLOGY OF NERVE, GLIAL AND MUSCLE CELL LINESDavid Schubert; Fiscal Year: 2005..This work is directly relevant to CNS trauma and stroke as well as to all chronic degenerative diseases where oxidative stress is a pathological hallmark. ..
- CAM Intervention for Rheumatoid ArthritisDavid Pascual; Fiscal Year: 2007..This application is responsive to RFA-AT-06-005: "Mechanisms of Immune Modulation" by addressing the requested research areas in understanding CAMs' mechanisms of action upon the induction and expansion of T cell regulatory populations. ..
- DOSAGE COMPENSATION IN DROSOPHILAJames Birchler; Fiscal Year: 2006..The proposed project will contribute to an understanding of how chromatin modifications become established along the length of the chromosome and how they affect gene expression. ..
- Conference on Cell Polarity & Asymmetric Cell DivisionsNorbert Perrimon; Fiscal Year: 2004..The goal of the meeting is to bring together the leading experts that study the mechanism of cell polarization and cell asymmetry to discuss emerging concepts. ..
- Functional Genomic Screen using RNAi in DrosophilaNorbert Perrimon; Fiscal Year: 2006..Finally, to demonstrate the value of the approach, we describe a number of cell-based screens that will identify genes involved in cell survival, cytokinesis, cell shape changes and immunity. ..
- Characterization of the Insulin to Autophagy Pathway in MusclesNorbert Perrimon; Fiscal Year: 2010....
- Drosophila Transgenic RNAi Resource ProjectNorbert Perrimon; Fiscal Year: 2010....
- Functional Genomic analysis using RNAi screen in DrosophilaNorbert Perrimon; Fiscal Year: 2009....
- Host factors involved in bacterial pathogenesisNorbert Perrimon; Fiscal Year: 2009..tuberculosis and its human host. ..
- ROLES OF HEPARAN SULFATE PROTEOGLYCANS IN SIGNALINGNorbert Perrimon; Fiscal Year: 2003..Because these pathways have also been implicated in various disease stages; e.g., oncogenesis, our studies may lead to novel ways to modulate specifically the activity of these signaling pathways. ..
- Viral Immunity in DrosophilaNorbert Perrimon; Fiscal Year: 2007..Because our insect virus system is sensitive to drugs that are used against human viruses, our studies may lead to the identification of novel antiviral compounds that may prove effective in mammalian cells. ..
- New collections of dsRNAs and overexpression miRNA constructs to supplement RNAiNorbert Perrimon; Fiscal Year: 2006..The opportunity to add these unconventional but clearly important genes to the list of targets that can be screened at the DRSC will reinforce the center's role as a leader in the field of genomic screens. ..
- Network Topology in Cell SignalingNorbert Perrimon; Fiscal Year: 2007..Altogether, these studies will greatly advance our knowledge of signaling networks and their organization during signal transduction. ..
