Genomes and Genes
Summary: A family of gram-negative bacteria usually found in soil or water and including many plant pathogens and a few animal pathogens.
Publications147 found, 100 shown here
- Specificity of the Pseudomonas aeruginosa PAO1 lipoprotein I gene as a DNA probe and PCR target region within the PseudomonadaceaeA Saint-Onge
Molecular Genetics Section, Biotechnology Research Institute, Montreal, Quebec, Canada
J Gen Microbiol 138:733-41. 1992..assessed against bacterial colonies by PCR or against purified genomic DNA by Southern blot analysis, using a number of representative strains within the Pseudomonadaceae. The oprI gene was found to be well conserved within RNA group I.
- Cloning and nucleotide sequence of the Pseudomonas aeruginosa glucose-selective OprB porin gene and distribution of OprB within the family PseudomonadaceaeJ L Wylie
Department of Microbiology, University of Manitoba, Winnipeg, Canada
Eur J Biochem 220:505-12. 1994..These species also contained DNA that hybridized to a P. aeruginosa oprB gene probe...
- Siderophores of the Pseudomonadaceae sensu stricto (fluorescent and non-fluorescent Pseudomonas spp.)H Budzikiewicz
Institut fur Organische Chemie, Universitat zu Koln, Germany
Fortschr Chem Org Naturst 87:81-237. 2004
- Ecological and physiological analyses of Pseudomonad species within a phenol remediation systemA S Whiteley
Molecular Microbial Ecology Laboratory, Natural Environment Research Council, Centre for Ecology and Hydrology-Oxford, Mansfield Road, Oxford, OX1 3SR, UK
J Microbiol Methods 44:79-88. 2001....
- Amplified ribosomal DNA restriction analysis for the characterization of Azotobacteraceae: a contribution to the study of these free-living nitrogen-fixing bacteriaLucia Aquilanti
Dipartimento di Scienze degli Alimenti, Universita Politecnica delle Marche, Via Brecce Bianche, 60131 Ancona, Italy
J Microbiol Methods 57:197-206. 2004..Cluster analysis was successfully employed for the identification of members of the family Azotobacteraceae, being assignation into species of the isolates confirmed by means of partial 16S rRNA gene sequencing...
- Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotionJúlia Kuklinsky-Sobral
Departamento de Genetica, Escola Superior de Agricultura Luiz de Queiroz, Universidade de Sao Paulo, PO Box 83, 13400 970 Piracicaba, Sao Paulo, Brazil
Environ Microbiol 6:1244-51. 2004..The soybean-associated bacteria showing characteristics related to plant growth promotion were identified as belonging to the genera Pseudomonas, Ralstonia, Enterobacter, Pantoea and Acinetobacter...
- A set of positively regulated flagellar gene promoters in Caulobacter crescentus with sequence homology to the nif gene promoters of Klebsiella pneumoniaeD Mullin
Department of Molecular Biology, Princeton University, NJ 08544
J Mol Biol 195:939-43. 1987..We speculate that the conserved sequence elements mapping at -13, -24 and -100 are cis-acting regulatory elements required for the transcription and periodic regulation of these fla genes in the C. crescentus cell cycle...
- Isolation and characterization of novel bacteria degrading polycyclic aromatic hydrocarbons from polluted Greek soilsHaimou Zhang
Sector of Organic Chemistry and Biochemistry, Department of Chemistry, University of Ioannina, 45110 Ioannina, Greece
Appl Microbiol Biotechnol 65:124-31. 2004..This is the first report of a representative of the genus Paracoccus capable of degrading PAHs with such versatility. These three strains may be useful for bioremediation applications...
- Pseudomonads associated with midrib rot and soft rot of butterhead lettuce and endiveB Cottyn
Department of Crop Protection, Agricultural Research Centre Burg Van Gansberghelaan 96, BE 9820 Merelbeke, Belgium
Commun Agric Appl Biol Sci 70:101-9. 2005..Fluorescent pseudomonads with phenotype HR+ were consistently isolated from typical dark midrib rot symptoms, and selected isolates reproduced the typical midrib rot symptoms when spray-inoculated onto healthy lettuce plants...
- The pinyon rhizosphere, plant stress, and herbivory affect the abundance of microbial decomposers in soilsC R Kuske
Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA
Microb Ecol 45:340-52. 2003..Although all four groups were present in all the environments, the four microbial groups were affected differently by the pinyon rhizosphere, by tree age, and by tree stress caused by the cinder soil and insect herbivory...
- Combined effect of freeze chilling and MAP on quality parameters of raw chicken filletsA Patsias
Laboratory of Food Chemistry and Microbiology, Department of Chemistry, University of Ioannina, Ioannina 45110, Greece
Food Microbiol 25:575-81. 2008..MAP in combination with freeze chilling had a negligible effect on product quality...
- Growth and survival of immature Heamatobia irritans (Diptera; Muscidae) is influenced by bacterial isolated from cattle manure and conspecific larvaeM A Perotti
Research Centre, Agriculture, Lethbridge, AB, Canada
J Med Entomol 38:180-7. 2001..Bacteria in manure belonged to the Bacillaceae, Pseudomonadaceae, Micrococcaceae, Corynebacteriaceae, Enterobacteriaceae, Microbacteriaceae, and two unassigned genera...
- Use of Etests with carbapenems for Gram-negative rods producing beta-lactamasesBekir S Kocazeybek
Cerrahpasa Medical Faculty, Microbiology and Clinical Microbiology Department, University of Istanbul, Cerrahpasa, Istanbul, Turkey
Int J Antimicrob Agents 19:159-62. 2002..The imipenem and meropenem sensitivities of Klebsiella spp. were 98.4 and 100%, respectively, but imipenem resistance (21.6%) in Pseudomonas aeruginosa strains was higher than that of meropenem (10.8%)...
- Resistance-pattern-analysis--a step toward predictable differentiated antibiotic therapyW Fegeler
Institute of Medical Microbiology,
Zentralbl Bakteriol Mikrobiol Hyg A 270:153-9. 1988..In comparison to gentamicin, aztreonam showed the best results against Pseudomonadaceae. Using common combinations of antibiotics for the initial interventive therapy the possible use of RPA for a ..
- Inhibition of Salmonella enterica by plant-associated pseudomonads in vitro and on sprouting alfalfa seedWilliam F Fett
Food Safety Intervention Technologies Research Unit, Eastern Regional Research Center, Agricultural Research Service, US Department of Agriculture, Wyndmoor, Pennsylvania 19038, USA
J Food Prot 69:719-28. 2006..Time course studies indicated that S. enterica outgrowth was controlled on days 1 through 6 of sprouting. Competitive exclusion as a potential food safety intervention for seed sprouts merits further study...
- Extracellular chitinases of fluorescent pseudomonads antifungal to Fusarium oxysporum f. sp. dianthi causing carnation wiltNaosekpam Singh Ajit
Floriculture Division, Institute of Himalayan Bioresource Technology, Palampur, 176061, Himachal Pradesh, India
Curr Microbiol 52:310-6. 2006..The foregoing studies clearly established the significance of chitinases in the antagonism of fluorescent pseudomonads, showing avenues for possible exploitation in carnation wilt management...
- Competitive hybridization on spotted microarrays as a tool to conduct comparative genomic analyses of Xylella fastidiosa strainsRegina Costa de Oliveira
Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes, SP, Brazil
FEMS Microbiol Lett 216:15-21. 2002..This validation will enable the use of microarray-based comparisons across a wide variety of microorganisms..
- Characterization of insertions of IS476 and two newly identified insertion sequences, IS1478 and IS1479, in Xanthomonas campestris pv. campestrisJ H Chen
Institute of Molecular Biology, National Chung Hsing University, Taichung 40227, Taiwan, Republic of China
J Bacteriol 181:1220-8. 1999..The results of Southern blot hybridization analysis indicated that multiple copies of IS476, IS1478, and IS1479 are present in the genomes of all seven X. campestris pv. campestris strains tested and several X. campestris pathovars...
- Bacterial propagation in reusable water reservoirs in a humidified oxygen supply systemNobuharu Kobayashi
Department of Microbiology, Saitama Medical School, Saitama, Japan
J Infect Chemother 12:160-2. 2006..These results suggest that it is not recommended to maintain these water reservoirs by the conventional procedure...
- Isolation and identification of bacteria associated with adult laboratory Mexican fruit flies, Anastrepha ludens (Diptera: Tephritidae)L V Kuzina
Department of Entomology, University of California Riverside, Riverside, CA 92521, USA
Curr Microbiol 42:290-4. 2001..we identified a total of 18 different bacterial species belonging to the family Enterobacteriaceae, Pseudomonadaceae, Vibrionaceae, Micrococcaceae, Deinococcacea, Bacillaceae, and the genus Listeria...
- Diverse tetracycline resistant bacteria and resistance genes from coastal waters of Jiaozhou BayHongyue Dang
Key Laboratory of Marine Geology and Environment, Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, People s Republic of China
Microb Ecol 55:237-46. 2008..Enterobacteriaceae, Pseudomonadaceae, and Vibrionaceae constituted the majority of the typical resistant isolates...
- Gram-negative bacteria in water distribution systems of hospitalsNimfa Maria Stojek
Department of Occupational Biohazards, Institute of Agricultural Medicine, Jaczewskiego 2, 20 090 Lublin, Poland
Ann Agric Environ Med 15:135-42. 2008..1% of the water samples taken in hospitals in the concentrations 11-300 cfu/100 ml. Species of the family Pseudomonadaceae predominated among GNB-NE strains isolated from the examined water samples, forming on average 71...
- Legionella waterline colonization: detection of Legionella species in domestic, hotel and hospital hot water systemsE Leoni
Department of Medicine and Public Health, University of Bologna, Bologna, Italy
J Appl Microbiol 98:373-9. 2005..in the city of Bologna (Italy) and their possible association with bacterial contamination (total counts and Pseudomonadaceae) and the chemical characteristics of the water (pH, Ca, Mg, Fe, Mn, Cu, Zn and Total Organic Carbon, TOC).
- Acclimated biomass that degrades Sulfonated Naphthalene Formaldehyde CondensateJihane Cheriaa
Laboratory of Analysis, Treatment, Valorization and Environmental Pollution and Products, Department of Microbiology, Faculty of Pharmacy, Monastir, Tunisia
Pak J Biol Sci 11:1588-93. 2008..species community that was able to degrade SNFC consisted of aerobic Gram-negative rods belonging to the Pseudomonadaceae family...
- Development of a P1 phagemid system for the delivery of DNA into Gram-negative bacteriaCaroline Westwater
Department of Microbiology and Immunology, Medical University of South Carolina, 173 Ashley Avenue BSB 201, Charleston, SC 29403, USA
Microbiology 148:943-50. 2002..coli, Shigella flexneri, Shigella dysenteriae, Klebsiella pneumoniae and Citrobacter freundii) and Pseudomonadaceae (Pseudomonas aeruginosa)...
- The effects of circumcision on the penis microbiomeLance B Price
Translational Genomics Research Institute TGen, Flagstaff, Arizona, United States of America
PLoS ONE 5:e8422. 2010..Circumcision is associated with significant reductions in HIV, HSV-2 and HPV infections among men and significant reductions in bacterial vaginosis among their female partners...
- Halogenated metabolites from the new Okinawan red alga Laurencia yonaguniensisYoshinori Takahashi
Division of Material Science, Graduate School of Environmental Earth Science, Hokkaido University, Sapporo 060 0810, Japan
J Nat Prod 65:395-8. 2002..Neoirietetraol (1) was toxic to the brine shrimp (Altemia salina; LC50, 40.1 microM) and also showed weak antibacterial activities against two marine bacteria, Alcaligenes aquamarinus and Escherichia coli...
- Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiotaLance B Price
Translational Genomics Research Institute, Flagstaff, Arizona, United States of America
PLoS ONE 4:e6462. 2009..We characterized wound bacteria from a cohort of chronic wound patients using a 16S rRNA gene-based pyrosequencing approach and assessed the impact of diabetes and antibiotics on chronic wound microbiota...
- Acute mastoiditis in children: epidemiologic, clinical, microbiologic, and therapeutic aspects over past yearsM Nussinovitch
Department of Pediatrics C, Schneider Children s Medical Center of Israel, Petah Tikva and Sackler School of Medicine, Tel Aviv University, Israel
Clin Pediatr (Phila) 43:261-7. 2004..2% isolation rate). Pseudomonas aeruginosa and Streptococcus pneumoniae were the most frequently isolated agents. This review showed a significant increase (150%) in the number of patients with acute mastoiditis...
- Comparison of bioassays by testing whole soil and their water extract from contaminated sitesLaura Leitgib
Budapest University of Technology and Economics, Department of Agricultural Chemical Technology, Budapest, Szt Gellért tér 4 H 1111, Hungary
Chemosphere 66:428-34. 2007..The direct contact environmental toxicity tests are able to meet the requirements of environmental toxicology: reliability, sensibility, reproducibility, rapidity and low cost...
- Diversity of endophytic bacteria in Brazilian sugarcaneG S Magnani
Departamento de Bioquimica e Biologia Molecular, Universidade Federal do Parana, Curitiba, PR, Brasil
Genet Mol Res 9:250-8. 2010..Bacilli; group III contained one representative, Curtobacterium sp; group IV contained representatives of the Pseudomonadaceae family, and group V had one isolate with an uncultured bacterium...
- Size distribution of bacterial and fungal bioaerosols in indoor airR L Górny
Department of Indoor Exposure Assessment, Institute of Occupational Medicine and Environmental Health, Koscielna 13, 41 200 Sosnowiec, Poland
Ann Agric Environ Med 6:105-13. 1999..Staphylococcus spp., Bacillus spp., Pseudomonadaceae, Aeromonas spp., Nocardia spp...
- Strong mimicry of an rRNA binding site for two proteins by the mRNA encoding both proteinsKelly P Williams
Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia 24061, USA
RNA Biol 5:145-8. 2008..23S rRNA at the primary sequence and secondary structure levels, in a gammaproteobacterial clade comprising Pseudomonadaceae and certain marine bacteria...
- Virus particles monitored by fluorescence spectroscopy: a potential detection assay for macromolecular assemblyAlexandra Alimova
Institute for Ultrafast Spectroscopy and Lasers, The City College of New York, Convent Avenue and 137th Street, New York, NY 10031, USA
Photochem Photobiol 80:41-6. 2004..This work demonstrates that fluorescence may offer a novel tool to detect viruses and monitor viral infection of cells and may be part of a biodefense application...
- Characterization of an insertion sequence, IS12528, from Gluconobacter suboxydansK Kondo
Department of Biotechnology, Graduate School of Agriculture and Life Sciences, University of Tokyo, Japan
Appl Environ Microbiol 63:1139-42. 1997..These observations suggest that IS12528 is one of the insertion sequences that are responsible for genetic instability leading to deficiencies in various physiological properties in a variety of acetic acid bacteria...
- [Computer analysis of regulating metabolism of glycerol-3-phosphate in proteobacteria genome]L V Danilova
Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, 101447 Russia
Mol Biol (Mosk) 37:843-9. 2003..consensus sequences being TGTTCGATAACGAACA for Enterobacteriaceae, wTTTTCGTATACGAAAAw for Pseudomonadaceae, and AATGCTCGATCGAGCATT for Vibrionaceae...
- Conservation of the response regulator gene gacA in Pseudomonas speciesJ T de Souza
Laboratory of Phytopathology, Department of Plant Sciences, Wageningen University, Binnenhaven 5, PO Box 8025, 6709 PD, Wageningen, The Netherlands
Environ Microbiol 5:1328-40. 2003..Within the Pseudomonadaceae and Enterobacteriaceae, polymorphisms within gacA and its homologues allowed identification of six and five ..
- Characterization of the genes encoding the three-component membrane-bound alcohol dehydrogenase from Gluconobacter suboxydans and their expression in Acetobacter pasteurianusK Kondo
Department of Biotechnology, Graduate School of Agriculture and Life Sciences, University of Tokyo, Japan
Appl Environ Microbiol 63:1131-8. 1997..suboxydans is not essential for ADH activity in A. pasteurianus, in contrast to the essential role of A. pasteurianus AdhS, which is required for correct assembly of the dehydrogenase and cytochrome c subunits on the membrane...
- Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanutAlka Gupta
Central Plantation Crops Research Institute, Kasaragod, Kerala, India
PLoS ONE 9:e104259. 2014..analysis revealed that both CPCRI-1 and CPCRI-3 belonged to Enterobacteriaceae family, while, CPCRI-2 was a Pseudomonadaceae family member...
- Determination of the inflammatory potential of bioaerosols from a duck-fattening unit by using a limulus amebocyte lysate assay and human whole blood cytokine responseB A Zucker
Institute of Animal and Environmental Hygiene, Freie Universitat Berlin, Fachbereich Veterinarmedizin, Luisenstrasse 56, 10117 Berlin, Germany
J Vet Med B Infect Dis Vet Public Health 53:176-80. 2006..could be, in part, a result of an overestimation of the inflammatory potential of endotoxins originating from Pseudomonadaceae by the LAL assay. Pseudomonadaceae were regularly isolated from the air of the duck-fattening unit...
- Exposure to airborne microorganisms, dust and endotoxin during processing of valerian roots on farmsCzesława Skórska
Department of Occupational Biohazards, Institute of Agricultural Medicine, Jaczewskiego 2, 20 090 Lublin, Poland
Ann Agric Environ Med 12:119-26. 2005..washed roots until shaking in the drying room, the most numerous were Gram-negative bacteria of the family Pseudomonadaceae (mostly Stenotrophomonas maltophilia, Pseudomonas chlororaphis and Pseudomonas fluorescens)...
- Conservation of the gene for outer membrane protein OprF in the family Pseudomonadaceae: sequence of the Pseudomonas syringae oprF geneC A Ullstrom
Department of Microbiology, University of British Columbia, Vancouver, Canada
J Bacteriol 173:768-75. 1991..Southern probing of PstI chromosomal digests of 14 species from the family Pseudomonadaceae revealed that only the nine members of rRNA homology group I hybridized with the oprF gene...
- Permianibacter aggregans gen. nov., sp. nov., a bacterium of the family Pseudomonadaceae capable of aggregating potential biofuel-producing microalgaeHui Wang
Yantai Institute of Costal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen 361005, PR China Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, MD 21202, USA
Int J Syst Evol Microbiol 64:3503-7. 2014..16S rRNA gene-based phylogenetic analysis revealed that strain HW001(T) is affiliated with the family Pseudomonadaceae in the phylum Proteobacteria, but forms a distinct clade within this family...
- Legionella and other gram-negative bacteria in potable water from various rural and urban sourcesNimfa Stojek
Department of Occupational Biohazards, Institute of Agricultural Medicine, Jaczewskiego 2, 20 090 Lublin, Poland
Ann Agric Environ Med 13:323-35. 2006..Enterobacter spp., Klebsiella spp., Serratia spp., and Pantoea agglomerans were most common among GNB-E, while Acinetobacter spp. and species of Pseudomonadaceae family predominated among GNB-NE.
- [Discordancies between classical and API 20E microtest biochemical identification of Vibrio and Aeromonas strains]Anca Michaela Israil
I N C D M I Cantacuzino, Universitatea Bucureşti, Facultatea de Biologie, D S P Ialomiţa
Bacteriol Virusol Parazitol Epidemiol 48:141-3. 2003..as Vibrio fluvialis by API 20E system, while using the classical tests one strain proved to belong to Pseudomonadaceae (O/F test of oxidative type), one was identified as Aeromonas schubertii, 2 Aeromonas hydrophila and 4 ..
- Non-fermentative gram-negative bacteria in hospital tap water and water used for haemodialysis and bronchoscope flushing: prevalence and distribution of antibiotic resistant strainsSara Vincenti
Institute of Public Health, Section of Hygiene, Universita Cattolica del Sacro Cuore, Rome 00168, Italy
Sci Total Environ 499:47-54. 2014..Analysis of antibiotic resistance rates has shown remarkable differences between Pseudomonadaceae (P. aeruginosa and P. fluorescens) and emerging pathogens, such as S. maltophilia and R. pickettii...
- Geochemical and microbiological responses to oxidant introduction into reduced subsurface sediment from the Hanford 300 Area, WashingtonElizabeth M Percak-Dennett
Department of Geoscience, University of Wisconsin Madison, 1215 West Dayton Street, Madison, Wisconsin 53706, United States
Environ Sci Technol 48:9197-204. 2014..g., Pseudomonadaceae, Burkholderiaceae, and Clostridiaceae) inferred from 16S rRNA gene pyrosequencing...
- Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440Francesco Renzi
Department of Biomolecular Sciences and Biotechnology, Universita degli Studi di Milano, Milan, Italy
Environ Microbiol 12:254-63. 2010..belong to groups I and II, respectively, both containing orthologous MvaT proteins that are present in all Pseudomonadaceae species...
- Systemic diseases in association with microbial species in oral biofilm from elderly requiring careH Senpuku
Department of Bacteriology, National Institute of Infectious Disease, Tokyo, Japan
Gerontology 49:301-9. 2003..It is understood that aging, tooth eruption, hormonal changes, active disease, oral hygiene, and other factors have an influence on biofilm formation and bacterial accumulation in the oral cavity...
- Airborne gram-negative bacterial flora in animal housesB A Zucker
Institut für Tier und Umwelthygiene des Fachbereichs Veterinärmedizin, Freien Universitat Berlin, Germany
J Vet Med B Infect Dis Vet Public Health 47:37-46. 2000..gram-negative bacterial flora the following bacterial families dominated: the Enterobacteriaceae, the Pseudomonadaceae and the Neisseriaceae...
- Characterization of cell lysis in Pseudomonas putida induced upon expression of heterologous killing genesM C Ronchel
Department of Biochemistry and Molecular and Cellular Biology of Plants, Estacion Experimental del Zaidin, Consejo Superior de Investigaciones Cientificas, Granada, Spain
Appl Environ Microbiol 64:4904-11. 1998..These systems are of interest for the Pseudomonadaceae because of the potential applications of these microbes as bioremediation agents and biopesticides...
- Rhizobacter gummiphilus sp. nov., a rubber-degrading bacterium isolated from the soil of a botanical garden in JapanShunsuke Imai
Department of Bioengineering, Nagaoka University of Technology, Nagaoka, Niigata 940 2188, Japan
J Gen Appl Microbiol 59:199-205. 2013..nov., with the strain NS21(T) (NBRC 109400(T), BCC 58006(T)) as the type strain. The emended description of the genus Rhizobacter was also presented...
- Pseudomonas aeruginosa and Achromobacter sp.: nitrifying aerobic denitrifiers have a plasmid encoding for denitrifying functional genesV Kathiravan
Central Institute of Brackishwater Aquaculture, 75, Santhome High Road, RA Puram, Chennai, 600028, India
World J Microbiol Biotechnol 30:1187-98. 2014..The possibility of horizontal transfer of plasmid among Pseudomonadaceae and Alcaligenaceae families in coastal aquaculture has been explored...
- Conservation of surface epitopes in Pseudomonas aeruginosa outer membrane porin protein OprFN L Martin
Department of Microbiology, University of British Columbia, Vancouver, Canada
FEMS Microbiol Lett 113:261-6. 1993..and eight of these mAbs also reacted with proteins from representatives of the rRNA homology group I of the Pseudomonadaceae. Nine of the ten mAbs recognized surface antigenic epitopes as determined by indirect immunofluorescence ..
- Carnobacterium divergens - a dominating bacterium of pork meat juiceGabriele Rieder
Division of Microbiology, Department of Molecular Biology, University of Salzburg, Salzburg, Austria
FEMS Microbiol Lett 332:122-30. 2012..belonging to the typical spoilage bacterial population of lactic acid bacteria (LAB), Enterococcaceae, and Pseudomonadaceae. Several additional isolates were identified as Staphylococcus spp. and Bacillus spp...
- Isolation and characterization of halophilic bacteria from Urmia Lake in IranSepideh Zununi Vahed
Department of Pharmaceutical Biotechnology, Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran
Mikrobiologiia 80:826-33. 2011..16S rRNA gene similarity levels along with phenotypic characteristics suggest that some of the isolated strains could be regarded as potential type strain for novel species, on which further studies are recommended...
- Microbiota dynamics and diversity at different stages of industrial processing of cocoa beans into cocoa powderLídia J R Lima
Laboratory of Food Microbiology, Wageningen University, Wageningen, The Netherlands
Appl Environ Microbiol 78:2904-13. 2012..bacterial communities based on enriched cocoa samples revealed a predominance of members of the Bacillaceae, Pseudomonadaceae, and Enterococcaceae...
- Genetic and phenotypic diversity of plant growth promoting rhizobacteria isolated from sugarcane plants growing in pakistanSamina Mehnaz
Department of Microbiology and Molecular Genetics, University of the Punjab, Lahore 54590, Pakistan
J Microbiol Biotechnol 20:1614-23. 2010..The community, however, was dominated by members of the Pseudomonadaceae and Enterobacteriaceae, as representatives of these genera were found in samples from every variety and ..
- Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea waterMichail M Yakimov
Istituto Sperimentale Talassografico, CNR, Spianata San Raineri 86, 98122 Messina, Italy
Int J Syst Evol Microbiol 53:779-85. 2003..nov., sp. nov.; strain RB-8(T) (= DSM 14852(T) = LMG 21398(T)) is the type strain...
- Matrix-assisted laser desorption ionization time-of-flight mass spectrometry identifies 90% of bacteria directly from blood culture vialsW Moussaoui
Institute of Bacteriology, Universite de Strasbourg, Hopitaux Universitaires de Strasbourg, France
Clin Microbiol Infect 16:1631-8. 2010..15% of all species found, Staphylococaceae 37.96%, Streptococaceae and Enterococaceae 20.85%, Pseudomonadaceae 1.69%, and anaerobes 2.44%...
- The modular architecture of Cellvibrio japonicus mannanases in glycoside hydrolase families 5 and 26 points to differences in their role in mannan degradationDeborah Hogg
School of Cell and Molecular Biosciences, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK
Biochem J 371:1027-43. 2003....
- Effect of red clay on diesel bioremediation and soil bacterial communityJaejoon Jung
Department of Environmental Science and Ecological Engineering, Korea University, Seoul, 136 713, Republic of Korea
Microb Ecol 68:314-23. 2014..community analysis determined via barcoded pyrosequencing indicated that Nocardioidaceae, Xanthomonadaceae, Pseudomonadaceae, and Caulobacteraceae were enriched by diesel contamination...
- Analysis of intestinal bacterial community diversity of adult Dastarcus helophoroidesZ Q Zhang
Laboratory of Forestry Pests Biological Control, College of Forestry, Northwest Agriculture and Forestry University, Yangling, Shaanxi, 712100, China
J Insect Sci 14:114. 2014..Lactobacillales: Enterococcaceae), Bacillus (Bacillales: Bacillaceae), Cellvibrio (Pseudomonadales: Pseudomonadaceae), Caulobacter (Caulobacterales: Caulobacteraceae), and uncultured bacteria, whereas those isolated by the ..
- [Etiology of acute diarrheas in children from the Lodz region. I. Occurrence of etiologic agents]Jolanta Zurawska-Olszewska
Zakład Mikrobiologii Lekarskiej, Katedra Mikrobiologii AM w Łodzi
Med Dosw Mikrobiol 54:129-36. 2002..Rotaviruses were detected by the latex test. Other microorganisms belonging to the Enterobacteriaceae, Pseudomonadaceae and Vibrionaceae families, as well as the genera Listeria, Campylobacter, Candida, Staphylococcus were ..
- Evaluation of a Serpens species bacterin for treatment of digital dermatitis in dairy cattleAndrew P Fidler
Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC 27607, USA
Res Vet Sci 93:1258-60. 2012..The results of this study indicate a lack of any clinical efficacy associated with vaccination in this herd, although inoculation with the bacterin did stimulate a measurable antibody response...
- Opportunistic microorganisms in individuals with lesions of denture stomatitisCristiane Aparecida Pereira
Institute of Science and Technology, Unesp Univ Estadual Paulista, Sao Jose dos Campos, São Paulo CEP 12245 000, Brazil
Diagn Microbiol Infect Dis 76:419-24. 2013..identify, and compare opportunistic microorganisms (Candida and Staphylococcus genera and Enterobacteriaceae/Pseudomonadaceae families) from prosthesis-fitting surfaces, the hard palate, and mouth rinses of individuals wearing ..
- Fine-scale degrader community profiling over an aerobic/anaerobic redox gradient in a toluene-contaminated aquiferMichael Larentis
Institute of Groundwater Ecology, Helmholtz Zentrum Munchen, German Research Center for Environmental Health, Ingolstadter Landstr 1, D 85764, Neuherberg, Germany
Environ Microbiol Rep 5:225-34. 2013..Well-defined small-scale distribution maxima of typical aerobic degrader lineages within the Pseudomonadaceae, Comamonadaceae and Burkholderiaceae are revealed over the redox gradient...
- [Influences of long-term application of organic and inorganic fertilizers on the composition and abundance of nirS-type denitrifiers in black soil]Chang Yin
Key Laboratory of Crop Nutrition and Fertilization, Ministry of Agriculture, Institute of Agricultural Resources and Regional Planning, China Academy of Agricultural Sciences, Beijing 100081, China
Huan Jing Ke Xue 33:3967-75. 2012..The 79 bp-type denitrifiers inhabiting exclusively in organic treatments (OM and MNPK) were affiliated to Pseudomonadaceae in gamma-Proteobacteria and Burkholderiales in beta-Proteobacteria...
- Species diversity, community dynamics, and metabolite kinetics of spontaneous leek fermentationsD Wouters
Research Group of Industrial Microbiology and Food Biotechnology, Department of Bioengineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, B 1050 Brussels, Belgium
Food Microbiol 33:185-96. 2013..Enterobacteriaceae, Pseudomonadaceae, and yeasts disappeared after one week of fermentation...
- Brood ball-mediated transmission of microbiome members in the dung beetle, Onthophagus taurus (Coleoptera: Scarabaeidae)Anne M Estes
Towson University, Department of Biological Sciences, Baltimore, Maryland, United States of America Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America
PLoS ONE 8:e79061. 2013..A ~1425 bp region of the 16S rRNA identified Pseudomonadaceae, Enterobacteriaceae, and Comamonadaceae as the most common bacterial families across all life stages and ..
- Plant growth promoting bacteria in Brachiaria brizanthaMylenne Calciolari Pinheiro Silva
Department of Soil Science, Laboratory of Soil Microbiology, São Paulo State University College of Agriculture, Av Padua Dias, 11, CP 09, Piracicaba, SP 13418 900, Brazil
World J Microbiol Biotechnol 29:163-71. 2013..At the end, this work elected the strains C4 (Pseudomonadaceae) and C7 (Rhodospirillaceae) as promising organisms for the development of inoculants due to their higher ..
- Microbial community dynamics of an urban drinking water distribution system subjected to phases of chloramination and chlorination treatmentsChiachi Hwang
Department of Civil and Environmental Engineering, University of Illinois Urbana Champaign, Urbana, Illinois, USA
Appl Environ Microbiol 78:7856-65. 2012..and Xanthomonadaceae were more abundant in chlorinated water, and Methylophilaceae, Methylococcaceae, and Pseudomonadaceae were more abundant in chloraminated water...
- Pseudomonas savastanoi pv. savastanoi: some like it knotCayo Ramos
Area de Genetica, Instituto de Hortofruticultura Subtropical y Mediterránea La Mayora, Universidad de Málaga Consejo Superior de Investigaciones Científicas, Malaga, Spain
Mol Plant Pathol 13:998-1009. 2012..Now, the time is right to explore the molecular basis of the P. savastanoi pv. savastanoi-olive interaction and to obtain insights into why some pathovars like it necrotic and why some like it knot...
- Presence and survival of Escherichia coli O157:H7 on lettuce leaves and in soil treated with contaminated compost and irrigation waterM Oliveira
University of Lleida, XaRTA Postharvest, Rovira Roure 191, 25198 Lleida, Spain
Int J Food Microbiol 156:133-40. 2012..irrigation water was evaluated, as well as the prevalence of aerobic mesophilic, Enterobacteriaceae and Pseudomonadaceae in control lettuce samples...
- Effect of temperature and additional carbon sources on phenol degradation by an indigenous soil PseudomonadParaskevi N Polymenakou
Environmental Chemical Processes Laboratory, Department of Chemistry, University of Crete, Knossos Avenue PO Box 1470, 714 09 Heraklion, Greece
Biodegradation 16:403-13. 2005..Phylogenetic analysis suggested its classification to Pseudomonadaceae family and showed 99.8% DNA sequence identity to Pseudomonas pseudoalcaligenes species...
- Pseudomonas corrugata: plant pathogen and/or biological resource?Vittoria Catara
Dipartimento di Scienze e Tecnologie Fitosanitarie, Universita degli Studi di Catania, Via Santa Sofia 100, 95123 Catania, Italy
Mol Plant Pathol 8:233-44. 2007..Taxonomy: Bacteria; Proteobacteria; gamma subdivision; order Pseudomonadales; family Pseudomonadaceae; genus Pseudomonas...
- Pseudomonas syringae pv. phaseolicola: from 'has bean' to supermodelDawn L Arnold
Centre for Research in Plant Science, University of the West of England, Bristol BS16 1QY, UK
Mol Plant Pathol 12:617-27. 2011..In this review, we discuss several of the areas of study that chart the rise of P. syringae pv. phaseolicola from a common pathogen of bean plants to a molecular plant-pathogen supermodel bacterium...
- Isolation, selection and characterization of root-associated growth promoting bacteria in Brazil Pine (Araucaria angustifolia)Carlos Marcelo Ribeiro
Soil Microbiology Laboratory, Department of Soil Science, Luiz de Queiroz College of Agriculture, University of Sao Paulo, ESALQ USP, Av Padua Dias, 11, CP 09, 13418 900, Piracicaba, Sao Paulo, Brazil
Microbiol Res 167:69-78. 2012..to characterize the most effective isolates as belonging to Bacillaceae (9 isolates), Enterobacteriaceae (11) and Pseudomonadaceae (1). As far as we know, this is the first study to include the species Ewingella americana as a PGPR.
- Deciphering the rhizosphere microbiome for disease-suppressive bacteriaRodrigo Mendes
Laboratory of Phytopathology, Wageningen University, Droevendaalsesteeg 1, Wageningen 6700 EE, Netherlands
Science 332:1097-100. 2011..Our data indicate that upon attack by a fungal root pathogen, plants can exploit microbial consortia from soil for protection against infections...
- Use of Lactobacillus plantarum and glucose to control the fermentation of "Bella di Cerignola" table olives, a traditional variety of Apulian region (Southern Italy)Marianne Perricone
Dept of Agro Environmental Sciences, Chemistry and Crop Protection, Faculty of Agricultural Science, Univ of Foggia, Via Napoli 25, 71100 Foggia, Italy
J Food Sci 75:M430-6. 2010..2 to 0.4 g/L). Concerning yeast species, Candida guilliermondii was mainly isolated at the beginning (7 to 14 d), while C. famata prevailed at the end of fermentation...
- Staphylococcus spp., Enterobacteriaceae and Pseudomonadaceae oral isolates from Brazilian HIV-positive patients. Correlation with CD4 cell counts and viral loadGraziella Nuernberg Back-Brito
Department of Oral Biosciences and Diagnosis, Laboratory of Microbiology, Sao Jose dos Campos Dental School, Univ Estadual Paulista UNESP, Brazil
Arch Oral Biol 56:1041-6. 2011The aim was to evaluate the presence of Staphylococcus spp., Enterobacteriaceae and Pseudomonadaceae in the oral cavities of HIV-positive patients...
- Species sorting and neutral processes are both important during the initial assembly of bacterial communitiesSilke Langenheder
Department of Ecology and Genetics Limnology, Uppsala University, Uppsala, Sweden
ISME J 5:1086-94. 2011..Most of these taxa belonged to widespread families with opportunistic growth strategies, such as the Pseudomonadaceae and Comamonadaceae, indicating that neutrally assembled taxa may primarily be generalists...
- Genetic tools for pseudomonads, rhizobia, and other gram-negative bacteriaJohn Davison
Laboratoire de Biologie Cellulaire, Institut National de la Recherche Agronomique, Versailles, France
Biotechniques 32:386-8, 390, 392-4, passim. 2002....
- Pseudomonas aeruginosa β-lactamase induction requires two permeases, AmpG and AmpPKok Fai Kong
Department of Biological Sciences, College of Arts and Sciences, Florida International University, Miami, FL, USA
BMC Microbiol 10:328. 2010..In Pseudomonadaceae, this intrinsic mechanism remains to be elucidated...
- Changes in psychrotrophic microbial populations during milk creaming to produce Grana Trentino cheeseElena Franciosi
IASMA Research and Innovation Centre, Fondazione Edmund Mach, Food Quality and Nutrition Area, Innovative Food Technologies, San Michele all Adige TN, Italy
Food Microbiol 28:43-51. 2011..b>Pseudomonadaceae were commonly isolated in cream samples while Streptococcaceae and Enterobacteriaceae in milk samples...
- Immunomodulatory activity of Aegle marmelos in freshwater fish (Catla catla) by non-specific protectionV Pratheepa
Department of Aquaculture Biotechnology, Manonmaniam Sundaranar University, Sri Paramakalyani Centre for Environmental Sciences, Alwarkurchi, Tamil Nadu, India
Pharm Biol 49:73-7. 2011..The production of fish is limited by infectious diseases; when a fish grows in an immunosuppressed condition, it becomes highly susceptible to disease...
- Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patientsMichael J Cox
Department of Medicine, University of California San Francisco, San Francisco, California, United States of America
PLoS ONE 5:e11044. 2010..CFTR) mutation on bacterial abundance and identify genotype-specific communities involving members of the Pseudomonadaceae, Xanthomonadaceae, Moraxellaceae and Enterobacteriaceae amongst others...
- Shelf-life extension of fresh Tuber aestivum and Tuber melanosporum truffles by modified atmosphere packaging with microperforated filmsCarmen Susana Rivera
Dept of Food Technology, Univ of Zaragoza, Miguel Servet 177 50013 Zaragoza, Spain
J Food Sci 75:E225-33. 2010..The shelf life of T. aestivum is prolonged to 21 d and of T. melanosporum to beyond 28 d increasing the possibilities for a foreign market...
- The three-dimensional structure of the gallium complex of azoverdin, a siderophore of Azomonas macrocytogenes ATCC 12334, determined by NMR using residual dipolar coupling constantsEmeric Wasielewski
Laboratoire de Biologie et de Génomique Structurales, Groupe de RMN, UMR 7104 CNRS, ESBS, Bd Sébastien Brant, 67400 Illkirch, France
Biochemistry 41:12488-97. 2002..The structural consequences of the particular isopyoverdin chemical structure are discussed in the context of the three-dimensional structures of other pyoverdins...
- Biological treatment of two-phase olive mill wastewater (TPOMW, alpeorujo): polyhydroxyalkanoates (PHAs) production by Azotobacter strainsFederico Cerrone
Group of Environmental Microbiology, Institute of Water Research, University of Granada, Granada, Spain
J Microbiol Biotechnol 20:594-601. 2010..H23 (CECT 4435), Azotobacter vinelandii UWD, and Azotobacter vinelandii (ATCC 12837), members of the family Pseudomonadaceae, were used to evaluate their capacity to grow and accumulate polyhydroxyalkanoates (PHAs) using two-phase ..
- Biofouling characteristics and identification of preponderant bacteria at different nutrient levels in batch tests of a recirculating cooling water systemFang Liu
College of Chemistry and Chemical Engineering, China University of Petroleum, 66 Changjiang West Road, Qingdao 266555, P R China
Environ Technol 32:901-10. 2011..Bacillaceae), Proteus (family Enterobacteriaceae), Neisseria (family Neisseriaceae) and Pseudomonas (family Pseudomonadaceae) were dominant in the conditions of lower carbon concentration (30 mg/L)...
- Composition of epiphytic bacterial communities differs on petals and leavesR R Junker
Department of Animal Ecology and Tropical Biology, University of Wurzburg, Biozentrum, Wurzburg, Germany
Plant Biol (Stuttg) 13:918-24. 2011..Moreover, the bacterial communities differed strongly in composition: while Pseudomonadaceae and Microbacteriaceae were the most abundant families on leaves, Enterobacteriaceae dominated the floral ..
- The structural genes encoding CO dehydrogenase subunits (cox L, M and S) in Pseudomonas carboxydovorans OM5 reside on plasmid pHCG3 and are, with the exception of Streptomyces thermoautotrophicus, conserved in carboxydotrophic bacteriaI Hugendieck
Lehrstuhl fur Mikrobiologie, Universitat Bayreuth, Federal Republic of Germany
Arch Microbiol 157:301-4. 1992..thermoautotrophicus CO dehydrogenase has an unusual electron acceptor specificity and some other properties setting it apart from the 'classical' CO dehydrogenases...
- Differentiation of some gram-negative glucose nonfermenting bacteria using miniaturized carbon sources assimilation testsP Kampfer
Fachgebiet Hygiene der Technischen Universität Berlin
Zentralbl Bakteriol Mikrobiol Hyg B 186:468-77. 1988..been demonstrated by more clinical significant Pseudomonas species, this method proves to be a useful alternative to existing methods of differentiation, especially with representatives of the families Pseudomonadaceae and Alcaligenaceae.
- Monoclonal antibody against species-specific epitope of Pseudomonas aeruginosa Hsp60 protein cross-reacts with Pseudomonas stutzeri and other Pseudomonas speciesE Lüneberg
Institut fur Medizinische Mikrobiologie, Medizinische Hochschule Hannover, Germany
FEMS Microbiol Lett 154:131-7. 1997..aeruginosa and all four cross-reacting species constitute a DNA homology group within the rRNA group I of the family Pseudomonadaceae, which belong to the gamma-subclass of the Proteobacteria.
- Potential sources of bacteria that are isolated from contact lenses during wearM D Willcox
School of Optometry and Cooperative Research Centre for Eye Research and Technology, University of New South Wales, Sydney, Australia
Optom Vis Sci 74:1030-8. 1997..The aim of this paper was to determine the possible contamination sources of contact lenses during wear...
- A 4-year longitudinal study of the oral prevalence of enteric gram-negative rods and yeasts in Chinese childrenC M Sedgley
Oral Biology Unit, Faculty of Dentistry, University of Hong Kong, Hong Kong
Oral Microbiol Immunol 12:183-8. 1997..from individual children over the 4-year study period was rare, suggesting that carriage of these organisms is transient...
- Prolyl endopeptidase from Sphingomonas capsulata: isolation and characterization of the enzyme and nucleotide sequence of the geneT Kabashima
School of Pharmaceutical Sciences, Nagasaki University, 1 14 Bunkyo machi, Nagasaki, 852, Japan
Arch Biochem Biophys 358:141-8. 1998..A region near the C-terminus and the region containing the putative catalytic triad residues were highly conserved. The enzyme was crystallized by the hanging drop vapor diffusion method, using ammonium sulfate as a precipitant...
- Water and air in two poultry processing plants' chilling facilities--a bacteriological surveyR Fries
Institute of Anatomy, Physiology and Hygiene of Domestic Animals, University of Bonn, Germany
Br Poult Sci 40:52-8. 1999..Flavobacterium, Alcaligenes, Acinetobacter and Pseudomonadaceae were predominant in these samples. 3...
- Identification of genes unique to Mo-independent nitrogenase systems in diverse diazotrophsT M Loveless
USDA Agriculture Research Service, Raleigh, N C, USA
Can J Microbiol 45:312-7. 1999..gestii possess the potential to express the Fe-only nitrogenase (nitrogenase 3). Like Azotobacter vinelandii, Azotobacter paspali appears to have the potential to express both the V-containing nitrogenase and the Fe-only nitrogenase...
- Combined use of acetic acid treatment and modified atmosphere packaging for extending the shelf-life of chilled chicken breast portionsS M Jiménez
Instituto de Technología de Alimentos, Facultad de Ingenieria Quimica, Universidad Nacional del Litoral, Santa Fe, Argentina
J Appl Microbiol 87:339-44. 1999..Results of this study indicate that using modified atmosphere packaging (MAP) on chicken breasts previously decontaminated with acetic acid is a worthwhile technology to extend samples shelf-life...