gram positive endospore forming bacteria

Summary

Summary: Bacteria that form endospores and are gram-positive. Representative genera include BACILLUS; CLOSTRIDIUM; MICROMONOSPORA; SACCHAROPOLYSPORA; and STREPTOMYCES.

Top Publications

  1. ncbi Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost
    Kouta Hatayama
    Division of Integrative Environmental Sciences, Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305 8572, Japan
    Int J Syst Evol Microbiol 55:2101-4. 2005
  2. ncbi Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea
    Leonid N Ten
    Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373 1, Guseong Dong, Yuseong Gu, Daejeon 305 701, Republic of Korea
    Int J Syst Evol Microbiol 56:2677-81. 2006
  3. ncbi Paenibacillus humicus sp. nov., isolated from poultry litter compost
    Ivone Vaz-Moreira
    Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, 4200 072 Porto, Portugal
    Int J Syst Evol Microbiol 57:2267-71. 2007
  4. ncbi 'Candidatus pasteuria usgae' sp. nov., an obligate endoparasite of the phytoparasitic nematode Belonolaimus longicaudatus
    R M Giblin-Davis
    University of Florida, IFAS, Fort Lauderdale Research and Education Center, 3205 College Avenue, Fort Lauderdale, FL 33314 7719, USA
    Int J Syst Evol Microbiol 53:197-200. 2003
  5. ncbi Soehngenia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria
    Sofia N Parshina
    Laboratory of Microbiology of Anthropogenic Environments, Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia
    Int J Syst Evol Microbiol 53:1791-9. 2003
  6. ncbi Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater
    Pierre Pol Liebgott
    Microbiologie et Biotechnologie des Environnements Chauds, UMR D180, IRD, Universités de Provence et de la Méditerranée, 163 Avenue de Luminy, Case 925, F 13288 Marseille Cedex 9, France
    Int J Syst Evol Microbiol 58:61-7. 2008
  7. ncbi The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis
    Patrick Eichenberger
    Department of Molecular and Cellular Biology, Harvard University Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA
    J Mol Biol 327:945-72. 2003
  8. ncbi Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food
    Odile Berge
    CEA Cadarache, DSV DEVM, Laboratoire d Ecologie Microbienne de la Rhizosphere, UMR 163 CNRS CEA, Saint Paul lez Durance, France
    Int J Syst Evol Microbiol 52:607-16. 2002
  9. ncbi Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures
    Veronique Roux
    Laboratoire de Bacteriologie virologie, Hopital de la Timone, CNRS UMR 6020, IFR48, Boulevard Jean Moulin, 13385 Marseille 05, France
    Int J Syst Evol Microbiol 54:1049-54. 2004
  10. ncbi Proteome analysis of Paenibacillus polymyxa E681 affected by barley
    Keyung Jo Seul
    Department of Microbiology, Kyungpook National University, Daegu 702 701, Korea
    J Microbiol Biotechnol 17:934-44. 2007

Scientific Experts

Detail Information

Publications93

  1. ncbi Planifilum fimeticola gen. nov., sp. nov. and Planifilum fulgidum sp. nov., novel members of the family 'Thermoactinomycetaceae' isolated from compost
    Kouta Hatayama
    Division of Integrative Environmental Sciences, Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki 305 8572, Japan
    Int J Syst Evol Microbiol 55:2101-4. 2005
    ..nov., sp. nov. (type strain H0165(T)=ATCC BAA-969(T)=JCM 12507(T)) and Planifilum fulgidum sp. nov. (type strain 500275(T)=ATCC BAA-970(T)=JCM 12508(T)) are proposed...
  2. ncbi Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea
    Leonid N Ten
    Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373 1, Guseong Dong, Yuseong Gu, Daejeon 305 701, Republic of Korea
    Int J Syst Evol Microbiol 56:2677-81. 2006
    ..nov. is proposed. The type strain is Gsoil 1411T (=KCTC 13020T=LMG 23405T)...
  3. ncbi Paenibacillus humicus sp. nov., isolated from poultry litter compost
    Ivone Vaz-Moreira
    Escola Superior de Biotecnologia, Universidade Catolica Portuguesa, 4200 072 Porto, Portugal
    Int J Syst Evol Microbiol 57:2267-71. 2007
    ..nov. is proposed. The type strain is PC-147(T) (=DSM 18784(T) =NBRC 102415(T) =LMG 23886(T))...
  4. ncbi 'Candidatus pasteuria usgae' sp. nov., an obligate endoparasite of the phytoparasitic nematode Belonolaimus longicaudatus
    R M Giblin-Davis
    University of Florida, IFAS, Fort Lauderdale Research and Education Center, 3205 College Avenue, Fort Lauderdale, FL 33314 7719, USA
    Int J Syst Evol Microbiol 53:197-200. 2003
    ..Because the obligately endoparasitic nature of prokaryotes in the genus Pasteuria prevents isolation of definitive type strains, strain S-1 is proposed as 'Candidatus Pasteuria usgae' sp. nov...
  5. ncbi Soehngenia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria
    Sofia N Parshina
    Laboratory of Microbiology of Anthropogenic Environments, Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia
    Int J Syst Evol Microbiol 53:1791-9. 2003
    ....
  6. ncbi Clostridiisalibacter paucivorans gen. nov., sp. nov., a novel moderately halophilic bacterium isolated from olive mill wastewater
    Pierre Pol Liebgott
    Microbiologie et Biotechnologie des Environnements Chauds, UMR D180, IRD, Universités de Provence et de la Méditerranée, 163 Avenue de Luminy, Case 925, F 13288 Marseille Cedex 9, France
    Int J Syst Evol Microbiol 58:61-7. 2008
    ..0 mol%. Due to its phenotypic and genotypic characteristics, isolate 37HS60(T) is proposed as a novel species of a new genus, Clostridiisalibacter paucivorans gen. nov., sp. nov. The type strain is 37HS60(T) (=JCM 14354(T)=CCUG 53849(T))...
  7. ncbi The sigmaE regulon and the identification of additional sporulation genes in Bacillus subtilis
    Patrick Eichenberger
    Department of Molecular and Cellular Biology, Harvard University Biological Laboratories, 16 Divinity Avenue, Cambridge, MA 02138, USA
    J Mol Biol 327:945-72. 2003
    ..Our findings set the stage for a comprehensive understanding of the contribution of a cell-specific transcription factor to development and morphogenesis...
  8. ncbi Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food
    Odile Berge
    CEA Cadarache, DSV DEVM, Laboratoire d Ecologie Microbienne de la Rhizosphere, UMR 163 CNRS CEA, Saint Paul lez Durance, France
    Int J Syst Evol Microbiol 52:607-16. 2002
    ..nov. (type strain RSA19T = ATCC BAA-95T = LMG 19080T) and Paenibacillus odorifer sp. nov. (type strain TOD45T = ATCC BAA-93T = LMG 19079T) are proposed...
  9. ncbi Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures
    Veronique Roux
    Laboratoire de Bacteriologie virologie, Hopital de la Timone, CNRS UMR 6020, IFR48, Boulevard Jean Moulin, 13385 Marseille 05, France
    Int J Syst Evol Microbiol 54:1049-54. 2004
    ..nov. and Paenibacillus timonensis sp. nov. The type strains are respectively strain 2301065T (=CIP 107939T=CCUG 48215T), strain 2301083T (=CIP 107938T=CCUG 48214T) and strain 2301032T (=CIP 108005T=CCUG 48216T)...
  10. ncbi Proteome analysis of Paenibacillus polymyxa E681 affected by barley
    Keyung Jo Seul
    Department of Microbiology, Kyungpook National University, Daegu 702 701, Korea
    J Microbiol Biotechnol 17:934-44. 2007
    ..Some of these proteins would be expected to be induced by environmental changes resulting from the accumulation of plant-secreted substances...
  11. ncbi A novel thermoacidophilic cellulase from Alicyclobacillus acidocaldarius
    A Morana
    Institute of Protein Biochemistry C N R, Via P Castellino 111, 80131, Naples, Italy
    Protein Pept Lett 15:1017-21. 2008
    ..2 kDa, relatively thermostable, with optimal pH and temperature of 4.0 and 65 degrees C, respectively. Enzymatic assays on several polysaccharides demonstrated that CelG was specific for carboxymethylcellulose...
  12. ncbi [Features of solid materials' colonization by pure and mixed cultures of methanotrophs]
    A G Kisten'
    Mikrobiol Z 66:64-71. 2004
    ..megaterium. The number of bacilli on these carriers quickly decreased. In the mixed cultures with P. putida the glass and polysterene colonization intensity decreased, while the amount of pseudomonas on carriers increased...
  13. pmc Nocturnal production of endospores in natural populations of epulopiscium-like surgeonfish symbionts
    Joseph F Flint
    Department of Microbiology, Cornell University, Wing Hall, Ithaca, NY 14853, USA
    J Bacteriol 187:7460-70. 2005
    ..We speculate that spore formation in Epulopiscium-like symbionts may be important for dispersal and may also enhance survival in the changing conditions of the fish intestinal tract...
  14. ncbi Citrinin, a mycotoxin from Penicillium citrinum, plays a role in inducing motility of Paenibacillus polymyxa
    Soo Young Park
    Systems Microbiology Research Center, KRIBB, Daejeon, Korea
    FEMS Microbiol Ecol 65:229-37. 2008
    ..This finding contributes to our understanding of the interactions between bacteria and fungal strains in nature...
  15. ncbi A strain of Lactobacillus plantarum affects segmented filamentous bacteria in the intestine of immunosuppressed mice
    Susana Fuentes
    Department of Microbiology, School of Pharmacy, University of Granada, Granada, Spain
    FEMS Microbiol Ecol 63:65-72. 2008
    ..The results confirmed the presence of the probiotic in the intestine and an expansion of SFB in the ileum of immunocompromised mice, which was abolished upon administration of L. plantarum, an effect not described to date...
  16. ncbi Molecular characterisation of bacterial contamination in semi-final gelatine extracts, using denaturing gradient gel electrophoresis
    Elke De Clerck
    Laboratory of Microbiology, Department of Biochemistry, Physiology and Microbiology, Ghent University, Ghent, Belgium
    Syst Appl Microbiol 27:612-9. 2004
    ..Bacillus fumarioli, Bacillus licheniformis, members of the 'Bacillus cereus group', Bacillus subtilis, Bacillus shackletonii, Brevibacillus borstelensis and Brevibacillus agri were detected...
  17. pmc Swarming and complex pattern formation in Paenibacillus vortex studied by imaging and tracking cells
    Colin J Ingham
    Department of Medical Microbiology and Infection Control, Jeroen Bosch Hospital, s Hertogenbosh, The Netherlands
    BMC Microbiol 8:36. 2008
    ..The cellular mechanisms that underpin the complex multicellular organization of such a simple organism are not well understood...
  18. ncbi Cohnella laeviribosi sp. nov., isolated from a volcanic pond
    Eun Ah Cho
    Department of Biotechnology, Yonsei University, Seoul 120 749, Republic of Korea
    Int J Syst Evol Microbiol 57:2902-7. 2007
    ..nov. The type strain is RI-39(T) (=KCTC 3987(T) =KCCM 10653P(T) =CCUG 52217(T))...
  19. pmc A novel Acetivibrio cellulolyticus anchoring scaffoldin that bears divergent cohesins
    Qi Xu
    Department of Molecular Microbiology and Biotechnology, Tel Aviv University, Ramat Aviv, Israel
    J Bacteriol 186:5782-9. 2004
    ....
  20. ncbi Occurrence, hosts, morphology, and molecular characterisation of Pasteuria bacteria parasitic in nematodes of the family Plectidae
    Dieter Sturhan
    Biologische Bundesanstalt für Land und Forstwirtschaft, Institut für Nematologie und Wirbeltierkunde, Toppheideweg 88, 48161 Münster, Germany
    J Invertebr Pathol 88:17-26. 2005
    ..Preliminary results of the analysis of DNA phylogeny of Pasteuria spp. and their nematode hosts provide evidence for incongruence of their phylogenetic history and of host switching events during evolution of the bacterial parasites...
  21. ncbi Detection and characterization of Pasteuria 16S rRNA gene sequences from nematodes and soils
    Y P Duan
    Soil and Water Science Department, University of Florida, Gainesville, FL 32611 0290, USA
    Int J Syst Evol Microbiol 53:105-12. 2003
    ..PCR primers specific to Pasteuria 16S rRNA for detection of Pasteuria in soils were also designed and evaluated. Detection limits for soil DNA were 100-10,000 Pasteuria endospores (g soil)(-1)...
  22. ncbi Bacterial sulfate production by biodesulfurization of aromatic hydrocarbons, determined by ion chromatography
    L M Soto
    , Universidad del Zulia, Maracaibo, Venezuela
    J Chromatogr A 824:45-52. 1998
    ..02 mg/l and this concentration corresponded to the limit of detection obtained under the conditions employed in this study. IC is an economical, sensitive and accurate way to estimate the sulfate concentrations in microbiological samples...
  23. pmc Robinsoniella peoriensis bacteremia in a patient with pancreatic cancer
    Dingxia Shen
    Department of Microbiology, Chinese PLA General Hospital, 28 Fuxing Road, Beijing 100853, People s Republic of China
    J Clin Microbiol 48:3448-50. 2010
    ..We describe here a case of R. peoriensis bacteremia in a 42-year-old male with pancreatic cancer. The identification was confirmed by unique phenotypic profiles and partial 16S rRNA gene sequences...
  24. ncbi Identification by in situ hybridization of segmented filamentous bacteria in the intestine of diarrheic rainbow trout (Oncorhynchus mykiss)
    M C Urdaci
    Laboratoire de Microbiologie et Biochimie Appliquée, ENITA Bordeaux, Gradignan, France
    Res Microbiol 152:67-73. 2001
    ..The sequenced rrs gene was compared with published sequences and found to be closely related to (although distinct from) other SFB sequences. Implication of these bacteria in trout diarrheic illness remains hypothetical...
  25. ncbi Detection of Pasteuria penetrans infection in Meloidogyne arenaria race 1 in planta by polymerase chain reaction
    L M Schmidt
    Department of Microbiology and Cell Science, University of Florida, Gainesville, 32611, USA
    FEMS Microbiol Ecol 48:457-64. 2004
    ..The sporulation genes (spo genes), particularly sigE, have sequence diversity that recommends them for species and biotype differentiation of the numerous Pasteuria isolates that infect a large number of plant-parasitic nematodes...
  26. ncbi Urukthapelstatin A, a novel cytotoxic substance from marine-derived Mechercharimyces asporophorigenens YM11-542. I. Fermentation, isolation and biological activities
    Yoshihide Matsuo
    Marine Biotechnology Institute Co Ltd, Heita, Kamaishi, Iwate
    J Antibiot (Tokyo) 60:251-5. 2007
    ..Urukthapelstatin A dose-dependently inhibited the growth of human lung cancer A549 cells with an IC(50) value of 12 nM. Urukthapelstatin A also showed potent cytotoxic activity against a human cancer cell line panel...
  27. ncbi Cohnella thermotolerans gen. nov., sp. nov., and classification of 'Paenibacillus hongkongensis' as Cohnella hongkongensis sp. nov
    Peter Kampfer
    Institut fur Angewandte Mikrobiologie, Justus Liebig Universitat Giessen, IFZ Heinrich Buff Ring 26 32, D 35392 Giessen, Germany
    Int J Syst Evol Microbiol 56:781-6. 2006
    ..nov., sp. nov. (type strain CCUG 47242T = CIP 108492T = DSM 17683T) and Cohnella hongkongensis sp. nov. (type strain HKU3T = CCUG 49571T = CIP 107898T = DSM 17642T)...
  28. ncbi Tellurite resistance and reduction by a Paenibacillus sp. isolated from heavy metal-contaminated sediment
    Chih Ching Chien
    Graduate School of Biotechnology and Bioengineering, Yuan Ze University, 135 Yuan Tung Road, Chung Li 320, Taiwan
    Environ Toxicol Chem 28:1627-32. 2009
    ..The bacterium was identified as a Paenibacillus sp. according to its morphology, physiology, and 16S rDNA sequence homology...
  29. ncbi The extracellular Phr peptide-Rap phosphatase signaling circuit of Bacillus subtilis
    Mridula Pottathil
    Department of Microbiology, Immunology, and Molecular Genetics, University of California Los Angeles, 1602 Molecular Sciences Building, 405 Hilgard Avenue, Los Angeles, CA 90095, USA
    Front Biosci 8:d32-45. 2003
    ..e. the response to high cell density). This review will address the mechanism of extracellular Phr signaling peptide production, transport, response, and their role in quorum sensing...
  30. ncbi Pasteuria endospores from Heterodera cajani (Nematoda: Heteroderidae) exhibit inverted attachment and altered germination in cross-infection studies with Globodera pallida (Nematoda: Heteroderidae)
    Sharad Mohan
    Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, UK
    FEMS Microbiol Ecol 79:675-84. 2012
    ..Additionally, their respective endospore sizes were not significantly different, in contrast their host ranges are. Potential reasons for this remain unclear and are discussed...
  31. ncbi Paenibacillus ginsengarvi sp. nov., isolated from soil from ginseng cultivation
    Min Ho Yoon
    Department of Bio Environmental Chemistry, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 305 764, Republic of Korea
    Int J Syst Evol Microbiol 57:1810-4. 2007
    ..nov. is proposed. The type strain is Gsoil 139(T) (=KCTC 13059(T) =DSM 18677(T))...
  32. ncbi Evaluation of different growth media for the recovery of the species of Alicyclobacillus
    R C Witthuhn
    Department of Food Science, Stellenbosch University, Stellenbosch, Matieland, 7602, South Africa
    Lett Appl Microbiol 45:224-9. 2007
    ..from inoculated diluted and undiluted fruit-juice concentrates...
  33. ncbi [The Sse9I restriction-modification system: organization of genes and comparative analysis of proteins structures]
    D A Gonchar
    Mol Biol (Mosk) 41:491-8. 2007
    ..The sse9IR gene was cloned into the temperature-inducible expression vector, and recombinant Sse9I restriction endonuclease preparation was isolated...
  34. ncbi Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov
    Yoshihide Matsuo
    Marine Biotechnology Institute, 3 75 1 Heita, Kamaishi, Iwate 026 0001, Japan
    Int J Syst Evol Microbiol 56:2837-42. 2006
    ..nov., the type species, and Mechercharimyces asporophorigenens sp. nov., with the type strains YM3-251(T) (=MBIC06230(T)=DSM 44894(T)) and YM11-542(T) (=MBIC06487(T)=DSM 44955(T)), respectively...
  35. ncbi Anoxybacillus rupiensis sp. Nov., a novel thermophilic bacterium isolated from Rupi basin (Bulgaria)
    Anna Derekova
    Institute of Microbiology, Bulgarian Academy of Science, Acad G Bonchev Str 26, 1113 Sofia, Bulgaria
    Extremophiles 11:577-83. 2007
    ..nov. (=DSM 17127(T) = NBIMCC 8387(T)). The 16S rRNA gene sequence data of a strain R270(T) have been deposited in the EMBL databases under the accession number AJ879076...
  36. ncbi Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan
    Anna H Kaksonen
    Institute of Environmental Engineering and Biotechnology, Tampere University of Technology, Tampere, Finland
    Int J Syst Evol Microbiol 57:98-102. 2007
    ..nov., sp. nov. is proposed. The type strain of Desulfovirgula thermocuniculi is RL80JIV(T) (=DSM 16036(T)=JCM 13928(T))...
  37. ncbi Urukthapelstatin A, a novel cytotoxic substance from marine-derived Mechercharimyces asporophorigenens YM11-542. II. Physico-chemical properties and structural elucidation
    Yoshihide Matsuo
    Marine Biotechnology Institute Co Ltd
    J Antibiot (Tokyo) 60:256-60. 2007
    ..The structure of urukthapelstatin A was elucidated by NMR, MS, Marfey analysis, chiral HPLC and X-ray crystal analyses...
  38. ncbi Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov
    Richard A Albert
    Semco BioScience, 630 East Keefe, Milwaukee, WI 53212, USA
    Int J Syst Evol Microbiol 57:2729-37. 2007
    ..nov. (type strain DSM 16319(T) =LMG 22166(T)) and Viridibacillus neidei comb. nov. (type strain NRRL BD-87(T) =DSM 15031(T) =JCM 11077(T))...
  39. ncbi Temperature, soluble solids and pH effect on Alicyclobacillus acidoterrestris viability in lemon juice concentrate
    María C Maldonado
    Instituto de Biotecnologia, Facultad de Bioquimica, Quimica y Farmacia, UNT, Ayacucho 465, 4000, Tucuman, Argentina
    J Ind Microbiol Biotechnol 35:141-4. 2008
    ..00, 22 min). Bacterial growth was lower in clarified lemon juice, 26 min at 82 degrees C, than in non-clarified lemon juice, 51 min at 82 degrees C. Temperature was the parameter that had the greatest influence on the D value...
  40. ncbi Cohnella panacarvi sp. nov., a xylanolytic bacterium isolated from ginseng cultivating soil
    Min Ho Yoon
    Department of BioEnvironmental Chemistry, College of Agriculture and Life Sciences, Chungnam National University, Daejeon 305 764, Korea
    J Microbiol Biotechnol 17:913-8. 2007
    ..nov. is proposed. The type strain is Gsoil 349T (=KCTC 13060T = DSM 18696T)...
  41. ncbi Temperature-dependent costs of parasitism and maintenance of polymorphism under genotype-by-environment interactions
    P F Vale
    Institute of Evolutionary Biology, School of Biological Sciences, Ashworth Labs, University of Edinburgh, Edinburgh, UK
    J Evol Biol 21:1418-27. 2008
    ..Finally, we tested for temperature-dependent relationships between host and parasite fitness traits that form a key component of models of virulence evolution, and we found them to be stable across temperatures...
  42. ncbi Gracilibacillus ureilyticus sp. nov., a halotolerant bacterium from a saline-alkaline soil
    Ying Yi Huo
    College of Life Sciences, Zhejiang University, Hangzhou 310058, PR China
    Int J Syst Evol Microbiol 60:1383-6. 2010
    ..nov. (type strain MF38(T) =CGMCC 1.7727(T) =JCM 15711(T)) is proposed...
  43. ncbi Paenibacillus pocheonensis sp. nov., a facultative anaerobe isolated from soil of a ginseng field
    Sang Hoon Baek
    Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373 1, Guseong Dong, Yuseong Gu, Daejeon 305 701, Republic of Korea
    Int J Syst Evol Microbiol 60:1163-7. 2010
    ..Strain Gsoil 1138(T) is therefore considered to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus pocheonensis sp. nov. is proposed. The type strain is Gsoil 1138(T) (=KCTC 13941(T)=LMG 23404(T))...
  44. ncbi Proteocatella sphenisci gen. nov., sp. nov., a psychrotolerant, spore-forming anaerobe isolated from penguin guano
    Elena V Pikuta
    NASA NSSTC, Astrobiology Laboratory, 320 Sparkman Drive, Room 4247, Huntsville, AL 35805, USA
    Int J Syst Evol Microbiol 59:2302-7. 2009
    ..nov., sp. nov. is proposed. The type strain of Proteocatella sphenisci is PPP2T (=ATCC BAA-755T=JCM 12175T=CIP 108034T)...
  45. ncbi Effects of chelating reagents on colonial appearance of Paenibacillus alvei isolated from canine oral cavity
    Masatoshi Fujihara
    Department of Veterinary Microbiology, Faculty of Agriculture, Iwate University, Ueda, Morioka, Japan
    J Vet Med Sci 71:147-53. 2009
    ..We concluded that magnesium ion is essential for collective locomotion of P. alvei. This suggests that EDTA is useful for inhibition of biofilm formation...
  46. ncbi Colonization of segmented filamentous bacteria and its interaction with the luminal IgA level in conventional mice
    Yuji Ohashi
    Laboratory of Food Hygiene, Nippon Veterinary and Life Science University, 1 7 1, Kyonan cho, Musashino, Tokyo 180 8602, Japan
    Anaerobe 16:543-6. 2010
    ..These results suggested that the colonization of SFB in the pre-weaning and post-weaning periods might be prevented with IgA derived from maternal milk and self-produced IgA, respectively...
  47. ncbi Desmospora activa gen. nov., sp. nov., a thermoactinomycete isolated from sputum of a patient with suspected pulmonary tuberculosis, and emended description of the family Thermoactinomycetaceae Matsuo et al. 2006
    A F Yassin
    Institut für Medizinische Mikrobiologie und Immunologie der Universität Bonn, Sigmund Freud Strasse 25, 53127 Bonn, Germany
    Int J Syst Evol Microbiol 59:454-9. 2009
    ..nov., sp. nov. is proposed. The type strain of Desmospora activa is strain IMMIB L-1269(T) (=DSM 45169(T) =CCUG 55916(T)). An emended description of the family Thermoactinomycetaceae is also given...
  48. ncbi Inter- and intra-specific cuticle variation between amphimictic and parthenogenetic species of root-knot nematode (Meloidogyne spp.) as revealed by a bacterial parasite (Pasteuria penetrans)
    K G Davies
    Nematode Interactions Unit, Plant Pathology and Microbiology, Rothamsted Research, Harpenden, Hertfordshire, UK
    Int J Parasitol 38:851-9. 2008
    ....
  49. ncbi Evaluation of culture media for Paenibacillus larvae applied to studies of antimicrobial activity
    L B Gende
    Departamento de Biologia, Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata
    Rev Argent Microbiol 40:147-50. 2008
    ..larvae strains: 0.227 +/- 0.016 for the Cobo strain, 0.279 +/- 0.015 for La Plata strain, 0.758 +/- 0.020 for Mechongué strain and 0.244 +/- 0.0079 for Sierra de los Padres strain, respectively...
  50. ncbi Comparative analysis of the diversity of aerobic spore-forming bacteria in raw milk from organic and conventional dairy farms
    An Coorevits
    Laboratory of Microbiology LM UGent, Department of Biochemistry, Physiology and Microbiology, Ghent University, K L Ledeganckstraat 35, 9000 Ghent, Belgium
    Syst Appl Microbiol 31:126-40. 2008
    ..thermosphaericus in milk from conventional dairy farms. Possibly this is due to differences in feeding strategy but no decisive indications were found to support this assumption...
  51. ncbi The effects of multiple infections on the expression and evolution of virulence in a Daphnia-endoparasite system
    Frida Ben-Ami
    Zoologisches Institut, Evolutionsbiologie, Universitat Basel, Vesalgasse 1, CH 4051 Basel, Switzerland
    Evolution 62:1700-11. 2008
    ..Our results are consistent with the idea that less virulent parasite lines may be replaced by more virulent strains under conditions with high rates of multiple infections...
  52. ncbi Differential expression of nifH and anfH genes in Paenibacillus durus analysed by reverse transcriptase-PCR and denaturing gradient gel electrophoresis
    R L F Teixeira
    Instituto de Microbiologia Prof Paulo de Goes, Universidade Federal do Rio de Janeiro, Ilha do Fundao, Rio de Janeiro, Brasil
    Lett Appl Microbiol 46:344-9. 2008
    ..The aim of this study was to develop an approach based on a reverse transcriptase (RT)-PCR/denaturing gradient gel electrophoresis (DGGE) for the detection of the functional genes nifH and anfH in Paenibacillus durus...
  53. pmc Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution
    Rekin s Janky
    Laboratoire de Bioinformatique des Génomes et des Réseaux, Universite Libre de Bruxelles ULB, Campus Plaine, CP 263, Boulevard du Triomphe, 1050 Bruxelles, Belgium
    BMC Bioinformatics 9:37. 2008
    ..However, these tools are generally used as black boxes, with default parameters. A systematic evaluation of optimal parameters for a footprint discovery strategy can bring a sizeable improvement to the predictions...
  54. ncbi Short communication: bacterial ecology of high-temperature, short-time pasteurized milk processed in the United States
    M L Ranieri
    Department of Food Science, Cornell University, Ithaca, NY 14853, USA
    J Dairy Sci 92:4833-40. 2009
    ..to Paenibacillus spp. during refrigerated storage...
  55. ncbi Paenibacillus ginsengisoli sp. nov., a novel bacterium isolated from soil of a ginseng field in Pocheon Province, South Korea
    Myungjin Lee
    Department of Biological Sciences, Korea Advanced Institute of Science and Technology, 373 1, Guseong Dong, Yuseong Gu, Daejeon 305 701, Republic of Korea
    Antonie Van Leeuwenhoek 91:127-35. 2007
    ..nov. is proposed...
  56. ncbi Dialister invisus sp. nov., isolated from the human oral cavity
    J Downes
    Department of Microbiology, Dental Institute, Floor 28, Guy s Tower, Guy s Hospital, King s College London, London SE1 9RT, UK
    Int J Syst Evol Microbiol 53:1937-40. 2003
    ..The G+C content of the DNA of D. invisus strains is 45-46 mol%. The type strain is E7.25(T) (=CCUG 47026(T)=DSM 15470(T))...
  57. ncbi Highly selective electrocatalytic conversion of CO2 to CO at -0.57 V (NHE) by carbon monoxide dehydrogenase from Moorella thermoacetica
    Woonsup Shin
    Department of Chemistry, Sogang University, Seoul 121 742, Korea
    J Am Chem Soc 125:14688-9. 2003
    ..3). Nature's unique structure of C-cluster in CODH would be responsible for the low overpotential and the selective and fast conversion of CO2. The turnover number per C-cluster is 700 h-1, and the pH optimum is 6.3...
  58. ncbi Structure, diversity, and evolution of protein toxins from spore-forming entomopathogenic bacteria
    Ruud A de Maagd
    Plant Research International B V, 6700 AA Wageningen, Netherlands
    Annu Rev Genet 37:409-33. 2003
    ..Recombination between toxin genes and sequence divergence has resulted in a wide range of host specificities...
  59. ncbi Metabolic analysis of acetate accumulation during xylose consumption by Paenibacillus polymyxa
    B Marwoto
    Department of Molecular Biotechnology, Hiroshima University, Graduate School of Advanced Sciences of Matter, 1 3 1, 739 8530 Kagamiyama, Higashi Hiroshima, Japan
    Appl Microbiol Biotechnol 64:112-9. 2004
    ..In fed-batch culture on xylose, glucose feeding raised the butanediol yield to 0.56 mol/mol sugar and reduced acetate accumulation to 0.04 mol/mol sugar...
  60. ncbi Characterization of endospore-forming bacteria associated with entomopathogenic nematodes, Heterorhabditis spp., and description of Paenibacillus nematophilus sp. nov
    Michael R Enright
    Institute of Bioengineering and Agroecology, National University of Ireland, Maynooth, Co Kildare, Ireland
    Int J Syst Evol Microbiol 53:435-41. 2003
    ..nov. The type strain for this novel species is NEM1aT (=DSM 13559T =NCIMB 13845T). The other isolates, although closely related to the proposed species, are likely to represent at least one, but most likely two, novel species...
  61. pmc Postdivisional synthesis of the Sporosarcina ureae DNA translocase SpoIIIE either in the mother cell or in the prespore enables Bacillus subtilis to translocate DNA from the mother cell to the prespore
    Vasant K Chary
    Department of Microbiology and Immunology, Temple University School of Medicine, 3400 N Broad Street, Philadelphia, PA 19140, USA
    J Bacteriol 185:879-86. 2003
    ....
  62. ncbi [Characterization of thermophilic spore-forming bacteria from a geothermal spring in Lithuania based on 16S rDNA and 16S-23S rDNA intergenic spacers analyses]
    N Kuĭsene
    Department of Plant Physiology and Microbiology, Faculty of Natural Sciences, Vilnius University, Chiurlionio 21 27, Vilnius, 2009 Lithuania
    Mikrobiologiia 71:824-8. 2002
    ..On the basis of RFLP patterns of 16S rDNA and 16S-23S rDNA ITS-PCR analysis, the strains were subdivided into nine groups...
  63. ncbi Role of Alicyclobacillus acidoterrestris in the development of a disinfectant taint in shelf-stable fruit juice
    N Jensen
    Food Science Australia, North Ryde, NSW, Australia
    Lett Appl Microbiol 36:9-14. 2003
    ..This study was undertaken to identify the bacterium and metabolic products contributing to a disinfectant taint in shelf-stable fruit juice and to determine some of the growth conditions for the organism...
  64. ncbi [Effect of the medium composition and cultivation conditions on sporulation in chemolithotrophic bacteria]
    T I Bogdanova
    Institute of Microbiology, Russian Academy of Sciences, pr 60 letiya Oktyabrya 7, k 2, Moscow, 117312 Russia
    Mikrobiologiia 71:187-93. 2002
    ....
  65. ncbi [Screening of collagenase and keratinase producers]
    O V Ivanko
    Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, 154, Zabolotny St, Kyiv, 03143, Ukraine
    Mikrobiol Z 64:31-6. 2002
    ..6-5.9 times, and that of KerA--4.2-4.5 times...
  66. pmc SubtiList: the reference database for the Bacillus subtilis genome
    Ivan Moszer
    Unité de Génétique des Génomes Bactériens and Logiciels et Banques de Données, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France
    Nucleic Acids Res 30:62-5. 2002
    ..SubtiList is accessible at http://genolist.pasteur.fr/SubtiList/. Similar bacterial databases are accessible at http://genolist.pasteur.fr/...
  67. ncbi The interaction between the gelatin-binding domain of fibronectin and the attachment of Pasteuria penetrans endospores to nematode cuticle
    S Mohan
    IACR-Rothamsted, Harpenden, Hertfordshire, UK
    Parasitology 123:271-6. 2001
    ..The larger GBD fragment was the most effective at blocking adhesion. Pre-treatment of the GBD fragment with gelatin prevented the GBD fragment from inhibiting endospore attachment to the nematode cuticle...
  68. pmc Timing, localization, and persistence of colonization by segmented filamentous bacteria in the neonatal mouse gut depend on immune status of mothers and pups
    H Q Jiang
    Department of Biology, University of Pennsylvania, Philadelphia 19104, USA
    Infect Immun 69:3611-7. 2001
    ..Nevertheless, it is evident that the timing, localization, and persistence of colonization of the neonatal gut by SFB depends on the immune status of both mothers and pups...
  69. ncbi Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland
    S Elo
    Department of Biosciences, Viikki Biocenter, University of Helsinki, Finland
    Int J Syst Evol Microbiol 51:535-45. 2001
    ..Based on phylogenetic inference and phenotypic and chemotaxonomic characteristics, these isolates are proposed as a new species, Paenibacillus borealis sp. nov., the type strain of which is KK19T (= DSM 13188T = CCUG 43137T)...
  70. ncbi Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus th
    T N Nazina
    Department of Microbial Biogeochemistry and Biotechnology, Institute of Microbiology, Russian Academy of Sciences, Moscow
    Int J Syst Evol Microbiol 51:433-46. 2001
    ....
  71. ncbi Cuticle heterogeneity as exhibited by Pasteuria spore attachment is not linked to the phylogeny of parthenogenetic root-knot nematodes (Meloidogyne spp.)
    K G Davies
    IACR Rothamsted, Harpenden, Herts, UK
    Parasitology 122:111-20. 2001
    ..The results therefore beg the question of how do parthenogenetic root-knot nematodes maintain cuticle variability in the face of such an aggressive hyperparasite...
  72. ncbi Characteristics of Sulfobacillus acidophilus sp. nov. and other moderately thermophilic mineral-sulphide-oxidizing bacteria
    P R Norris
    Department of Biological Sciences, University of Warwick, Coventry, UK
    Microbiology 142:775-83. 1996
    ..Autotrophic growth on sulphur was consistently obtained only with S. acidophilus...
  73. ncbi Initiation of intracellular offspring in Epulopiscium
    Esther R Angert
    Department of Microbiology, Cornell University, Ithaca, NY, USA
    Mol Microbiol 51:827-35. 2004
    ..Unlike most endospore formers, Epulopiscium partitions only a small proportion of mother cell DNA into the developing offspring...
  74. ncbi Characterization of microorganisms using UV resonance Raman spectroscopy and chemometrics
    E Consuelo López-Díez
    Department of Chemistry, UMIST, P O Box 88, Sackville Street, Manchester M60 1QD, U K
    Anal Chem 76:585-91. 2004
    ..Therefore, we conclude that UVRR spectroscopy when coupled with chemometrics constitutes a powerful approach to the characterization and speciation of microorganisms...
  75. ncbi Tepidibacter formicigenes sp. nov., a novel spore-forming bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent
    Laurent Urios
    Laboratoire de Microbiologie et de Biotechnologie des Extrêmophiles, Département de Valorisation des Produits, IFREMER, Centre de Brest, BP 70, 29280 Plouzane, France
    Int J Syst Evol Microbiol 54:439-43. 2004
    ..nov. The type strain is DV1184(T) (=CIP 107893(T)=DSM 15518(T))...
  76. ncbi [Inhibition of Paenibacillus larvae employing a mixture of essential oils and thymol]
    S R Fuselli
    Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, Funes 3350, 7600 Mar del Plata, Argentina
    Rev Argent Microbiol 38:89-92. 2006
    ..An inhibitory synergetic effect on AFB was observed reducing MIC and MBC values due to the use of a mixture of 62.5% of thyme, 12.5% of cinnamon and 25% of thymol...
  77. ncbi [Optimization of the growth of Paenibacillus larvae in semi-selective media]
    F J Reynaldi
    Centro de Investigaciones de Fitopatología, Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, c c 31, calles 60 y 118, 1900 La Plata, Argentina
    Rev Argent Microbiol 38:69-72. 2006
    ..larvae from honey, specially for honeys with heterogeneous populations of bacterial spores; when culturing vegetative cells, MYPGP or MYPGP(NALPIA)A must be used to obtain good growth...
  78. ncbi Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions
    Jung Sook Lee
    Korea Research Institute of Bioscience and Biotechnology, 52 Oeundong, Yusong, Daejeon 305 333, Korea
    Int J Syst Evol Microbiol 56:251-7. 2006
    ..It is also proposed that Virgibacillus picturae be transferred to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. based on its 16S rRNA gene sequences and other taxonomic characteristics...
  79. ncbi Reductive dechlorination of beta-hexachlorocyclohexane (beta-HCH) by a Dehalobacter species in coculture with a Sedimentibacter sp
    Wim van Doesburg
    Laboratory of Microbiology, Wageningen University and Research Centre, The Netherlands
    FEMS Microbiol Ecol 54:87-95. 2005
    ..requires the presence of Sedimentibacter for growth and dechlorination, but the function of the latter bacterium is not clear. This is the first report on the metabolic dechlorination of beta-HCH by a defined anaerobic bacterial culture...
  80. ncbi Characterization of Paenibacillus popilliae rRNA operons
    Douglas W Dingman
    Department of Biochemistry and Genetics, Connecticut Agricultural Experiment Station, 123 Huntington Street, PO Box 1106, New Haven, CT 06504, USA
    Can J Microbiol 50:779-91. 2004
    ..Comparative analysis of the nucleotides on the 3' end of the 16S rRNA gene suggests that translation of P. popilliae mRNA may occur in Bacillus subtilis and Escherichia coli...
  81. ncbi [The phylogenetic diversity of aerobic organotrophic bacteria from the Dagan high-temperature oil field]
    T N Nazina
    Mikrobiologiia 74:401-9. 2005
    ..subterraneus, G. stearothermophilus, and G. thermoglucosidasius) and a novel species "Geobacillus jurassicus." A number of novel thermophilic oil-oxidizing bacilli have been isolated...
  82. ncbi Emended description of Pasteuria nishizawae
    Gregory R Noel
    US Department of Agriculture, Agricultural Research Service, 1102 S Goodwin Ave, Urbana, IL 61801, USA
    Int J Syst Evol Microbiol 55:1681-5. 2005
    ..The nucleotide sequence of the 16S rRNA gene is also provided...
  83. pmc Degradation of cyanophycin by Sedimentibacter hongkongensis strain KI and Citrobacter amalonaticus strain G Isolated from an anaerobic bacterial consortium
    Martin Obst
    Institut fur Molekulare Mikrobiologie und Biotechnologie, Westfalische Wilhelms Universitat Munster, Corrensstrasse 3, 48149 Munster, Germany
    Appl Environ Microbiol 71:3642-52. 2005
    ..The amino acids obtained from the cleavage of dipeptides were fermented to ethanol, acetic acid, and succinic acid, as revealed by gas chromatographic analysis and by spectrophotometric enzyme assays...
  84. pmc Operation of the CO dehydrogenase/acetyl coenzyme A pathway in both acetate oxidation and acetate formation by the syntrophically acetate-oxidizing bacterium Thermacetogenium phaeum
    Satoshi Hattori
    Research Institute for Biological Resources and Functions, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki, Japan
    J Bacteriol 187:3471-6. 2005
    ....
  85. pmc Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models
    Shaun Mahony
    National Centre for Biomedical Engineering Science, NUI, Galway, Galway, Ireland
    BMC Bioinformatics 5:23. 2004
    ..It is likely that future improvements in gene finding will involve the development of methods that can adequately deal with intra-genomic compositional variation...
  86. ncbi Paenibacillus cineris sp. nov. and Paenibacillus cookii sp. nov., from Antarctic volcanic soils and a gelatin-processing plant
    Niall A Logan
    School of Biological and Biomedical Sciences, Glasgow Caledonian University, Cowcaddens Road, Glasgow G4 0BA, UK
    Int J Syst Evol Microbiol 54:1071-6. 2004
    ..5-51.6 mol% G+C in their DNA and their major fatty acid is anteiso-C(15 : 0); however, fatty acids C(16 : 0) and anteiso-C(17 : 0) represent, respectively, 18 and 10 % of the total in P. cineris, but 11 and 20% in P. cookii...
  87. ncbi Paenibacillus elgii sp. nov., with broad antimicrobial activity
    Dal Soo Kim
    LG Life Sciences Ltd R and D Park, 104 1 Moonji dong, Yuseong Gu, Daejeon 305 380, Republic of Korea
    Int J Syst Evol Microbiol 54:2031-5. 2004
    ..4 and 19.8 %, respectively. These isolates thus merit species status within Paenibacillus, for which the name Paenibacillus elgii sp. nov. is proposed. The type strain is SD17(T) (=KCTC 10016BP(T)=NBRC 100335(T))...
  88. ncbi Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil
    Jeroen Heyrman
    Vakgroep BFM WE10V, Laboratorium voor Microbiologie, Universiteit Gent, K L Ledeganckstraat 35, B 9000 Gent, Belgium
    Int J Syst Evol Microbiol 55:111-7. 2005
    ....
  89. ncbi Effects of Paenibacillus nematophilus on the entomopathogenic nematode Heterorhabditis megidis
    Michael R Enright
    Department of Biology and Institute of Bioengineering and Agroecology, National University of Ireland, Maynooth, Co Kildare, Ireland
    J Invertebr Pathol 88:40-8. 2005
    ..megidis for wax moth larvae in sand, but not in a close contact (filter paper) assay. The results suggest that P. nematophilus may reduce the transmission potential of H. megidis through impeding the motility of IJs...
  90. ncbi Identification of medicinal off-flavours generated by Alicyclobacillus species in orange juice using GC-olfactometry and GC-MS
    D Gocmen
    Department of Food Engineering, Faculty of Agriculture, Uludag University, Gorukle Bursa, Turkey
    Lett Appl Microbiol 40:172-7. 2005
    ....
  91. ncbi Molecular insights into the initiation of sporulation in Gram-positive bacteria: new technologies for an old phenomenon
    Keith Stephenson
    School of Biochemistry and Microbiology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
    FEMS Microbiol Rev 29:281-301. 2005
    ....
  92. ncbi Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov.,
    Keiichi Goto
    Microbiological and Analytical Group, Food Research Laboratories, Mitsui Norin Co Ltd, 223 1, Miyahara, Fujieda, Shizuoka 426 0133, Japan
    Int J Syst Evol Microbiol 57:1276-85. 2007
    ..type strain 5-A239-2O-A(T)=DSM 17980(T)=IAM 15370(T)), Alicyclobacillus sacchari sp. nov. (type strain RB718(T)=DSM 17974(T)=IAM 15230(T)) and Alicyclobacillus shizuokensis sp. nov. (type strain 4-A336(T)=DSM 17981(T)=IAM 15226(T))...
  93. ncbi Robinsoniella peoriensis gen. nov., sp. nov., isolated from a swine-manure storage pit and a human clinical source
    Michael A Cotta
    Fermentation Biotechnology Research Unit, National Center for Agricultural Utilization Research, USDA, Agricultural Research Service, 1815 N University Street, Peoria, IL 61604, USA
    Int J Syst Evol Microbiol 59:150-5. 2009
    ..nov., sp. nov. is proposed. The type strain of Robinsoniella peoriensis is PPC31T (=CCUG 48729T =NRRL B-23985T)...