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| three dimensional imagingSummarySummary: The process of generating three-dimensional images by electronic, photographic, or other methods. For example, three-dimensional images can be generated by assembling multiple tomographic images with the aid of a computer, while photographic 3-D images (HOLOGRAPHY) can be made by exposing film to the interference pattern created when two laser light sources shine on an object. Top Publications
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Publications
Automated manifold surgery: constructing geometrically accurate and topologically correct models of the human cerebral cortexB Fischl
Nuclear Magnetic Resonance Center, Massachusetts General Hospital, Harvard Medical School, Charlestown 02129, USA
IEEE Trans Med Imaging 20:70-80. 2001....
User-guided 3D active contour segmentation of anatomical structures: significantly improved efficiency and reliabilityPaul A Yushkevich
Penn Image Computing and Science Laboratory, Department of Radiology, University of Pennsylvania, PA 19104 6274, USA
Neuroimage 31:1116-28. 2006..Analogous results for lateral ventricle segmentation are provided...
Tomographic molecular imaging and 3D quantification within adult mouse organsTomas Alanentalo
Umeå Center for Molecular Medicine, Umea University, S 901 87, Umea, Sweden
Nat Methods 4:31-3. 2007..Using the nonobese diabetic (NOD) mouse model, we demonstrate a correlation between total islet beta-cell volume and the onset of type-1 diabetes...
A study of diffusion tensor imaging by tissue-specific, smoothing-compensated voxel-based analysisJee Eun Lee
Waisman Laboratory for Brain Imaging and Behavior, Waisman Center, Madison, WI 53705, USA
Neuroimage 44:870-83. 2009..The T-SPOON method may be also applicable to other quantitative imaging maps such as T1 or T2 relaxometry, magnetization transfer, or PET tracer maps...
New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scalesS L Wearne
Computational Neurobiology and Imaging Center, Mount Sinai School of Medicine, New York, NY 10029 6574, USA
Neuroscience 136:661-80. 2005....
Multicell simulations of development and disease using the CompuCell3D simulation environmentMaciej H Swat
Biocomplexity Institute and Department of Physics, Indiana University, Bloomington, USA
Methods Mol Biol 500:361-428. 2009..This tutorial introduces Glazier-Graner-Hogeweg (GGH) multicell simulations and CompuCell3D, a simulation framework that allows users to build, test, and run GGH simulations...
Anatomically constrained region deformation for the automated segmentation of the hippocampus and the amygdala: Method and validation on controls and patients with Alzheimer's diseaseMarie Chupin
Department of Clinical and Experimental Epilepsy, Institute of Neurology, UCL, UK
Neuroimage 34:996-1019. 2007..The proposed approach provides a new framework for further developments in quantitative analyses of the pathological hippocampus and amygdala in MRI scans...
Image-based computational fluid dynamics modeling in realistic arterial geometriesDavid A Steinman
Imaging Research Laboratories, The John P Robarts Research Institute, The University of Western Ontario, London, Canada
Ann Biomed Eng 30:483-97. 2002..Issues related to accuracy, precision, and modeling assumptions are also discussed...
Magnitude and role of wall shear stress on cerebral aneurysm: computational fluid dynamic study of 20 middle cerebral artery aneurysmsMasaaki Shojima
Department of Neurosurgery, Faculty of Medicine, University of Tokyo, Japan
Stroke 35:2500-5. 2004..The magnitude and distribution of the WSS in and around human middle cerebral artery (MCA) aneurysms were analyzed using the method of computed fluid dynamics (CFD)...
Aneurysm growth occurs at region of low wall shear stress: patient-specific correlation of hemodynamics and growth in a longitudinal studyLoic Boussel
Department of Radiology, VA Medical Center, San Francisco, USA 94121, USA
Stroke 39:2997-3002. 2008..Low wall shear stress (WSS) has been reported to have a negative effect on endothelial cells normal physiology and may be an important contributor to local remodeling of the arterial wall and to aneurysm growth and rupture...
Effect of endothelial shear stress on the progression of coronary artery disease, vascular remodeling, and in-stent restenosis in humans: in vivo 6-month follow-up studyPeter H Stone
Cardiovascular Division, Brigham and Women s Hospital, 75 Francis St, Boston, Mass 02115, USA
Circulation 108:438-44. 2003..The endothelium controls local arterial responses by transduction of shear stress. Characterization of endothelial shear stress (ESS) may allow for prediction of progression of atherosclerosis and in-stent restenosis...
Measurement of myocardial mechanics in mice before and after infarction using multislice displacement-encoded MRI with 3D motion encodingWesley D Gilson
Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia 22908, USA
Am J Physiol Heart Circ Physiol 288:H1491-7. 2005..07 +/- 0.54 degrees /mm (R = 0.96, P < 0.05). DENSE MRI can assess the 3D myocardial mechanics of the murine heart in <1 h of scan time at 4.7 T and may be applied to studies of myocardial mechanics in genetically engineered mice...
Recommendations from Gynaecological (GYN) GEC-ESTRO Working Group (I): concepts and terms in 3D image based 3D treatment planning in cervix cancer brachytherapy with emphasis on MRI assessment of GTV and CTVChristine Haie-Meder
Department of Radiotherapy, Brachytherapy Unit, Institut Gustave Roussy, 39 rue Camille Desmoulins, 94805 Villejuif, France
Radiother Oncol 74:235-45. 2005..Furthermore, CTV for BT is defined related to risk for recurrence: high risk CTV and intermediate risk CTV. Beside verbal descriptions detailed examples are given, partly in form of schematic drawings...
Second-harmonic imaging microscopy of normal human and keratoconus corneaNaoyuki Morishige
The Eye Institute, School of Medicine, University of California Irvine Medical Center, Orange, California
Invest Ophthalmol Vis Sci 48:1087-94. 2007..The purpose of this study was to evaluate the ability of second-harmonic imaging to identify differences in corneal stromal collagen organization between normal human and keratoconus corneas...
Accelerating molecular modeling applications with graphics processorsJOHN E STONE
Beckman Institute, University of Illinois at Urbana Champaign, Urbana, IL 61801, USA
J Comput Chem 28:2618-40. 2007..In light of the performance obtained for this set of calculations, future applications of graphics processors to molecular dynamics simulations are discussed...
False discovery rate revisited: FDR and topological inference using Gaussian random fieldsJustin R Chumbley
Wellcome Trust Centre for Neuroimaging, University College London, London, UK
Neuroimage 44:62-70. 2009..We describe the nature of the problem, illustrate it with some examples and suggest a simple solution based on controlling the false discovery rate of connected excursion sets within an SPM, characterised by their volume...
Detection and quantification of left atrial structural remodeling with delayed-enhancement magnetic resonance imaging in patients with atrial fibrillationRobert S Oakes
Atrial Fibrillation Program, University of Utah School of Medicine, Salt Lake City, UT 84132 2400, USA
Circulation 119:1758-67. 2009..In this study, we report the utility of delayed-enhancement magnetic resonance imaging (DE-MRI) in detecting abnormal atrial tissue before radiofrequency ablation and in predicting procedural outcome...
A layer-specific three-dimensional model for the simulation of balloon angioplasty using magnetic resonance imaging and mechanical testingGerhard A Holzapfel
Institute for Structural Analysis Computational Biomechanics, Graz University of Technology, Austria
Ann Biomed Eng 30:753-67. 2002....
Automatic segmentation of cortical and trabecular compartments based on a dual threshold technique for in vivo micro-CT bone analysisHelen R Buie
Department of Mechanical and Manufacturing Engineering, Schulich School of Engineering, University of Calgary, 2500 University Drive N W, Calgary, Alberta, Canada T2N 1N4
Bone 41:505-15. 2007..Using the same input thresholds for similar datasets assures maximal consistency while alleviating time consuming semi-automated contouring...
Myocardial 3D strain calculation by combining cine displacement encoding with stimulated echoes (DENSE) and cine strain encoding (SENC) imagingAaron T Hess
Department of Human Biology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa
Magn Reson Med 62:77-84. 2009..42 +/-0.11, -0.10 +/-0.03, and -0.21 +/-0.02, respectively. These results show that this technique is capable of reliably quantifying 3D cardiac strain...
3D MRI-based multicomponent FSI models for atherosclerotic plaquesDalin Tang
Mathematical Sciences Department, Worcester Polytechnic Institute, Worcester, MA 01609, USA
Ann Biomed Eng 32:947-60. 2004..Large-scale patient studies are needed to validate the computational findings for possible plaque vulnerability assessment and rupture predictions...
Globally optimal stitching of tiled 3D microscopic image acquisitionsStephan Preibisch
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
Bioinformatics 25:1463-5. 2009..The physical coordinates provided by the microscope stage are not precise enough to allow direct reconstruction (Stitching) of the whole image from individual image stacks...
Whole-heart steady-state free precession coronary artery magnetic resonance angiographyOliver M Weber
Department of Radiology, University of California San Francisco, San Francisco, California 94143, USA
Magn Reson Med 50:1223-8. 2003..It is concluded that the whole-heart coronary MRA technique improves visible vessel length and facilitates high-quality coronary MRA of the complete coronary artery tree in a single measurement...
Texture analysis of medical imagesG Castellano
Neuroimage Laboratory, Faculty of Medical Sciences, State University of Campinas, Brazil
Clin Radiol 59:1061-9. 2004..In this article we clarify the principles of texture analysis and give examples of its applications, reviewing studies of the technique...
Hippocampal head size associated with verbal memory performance in nondemented elderlyV H Hackert
Department of Epidemiology and Biostatistics, Erasmus Medical Center, Rotterdam, The Netherlands
Neuroimage 17:1365-72. 2002..06, 0.59)). Our data suggest selective involvement of the hippocampal head in verbal memory, and add to recent findings of functional segregation along the longitudinal axis of the hippocampus...
Estimating linear cortical magnification in human primary visual cortex via dynamic programmingAnqi Qiu
Center for Imaging Science, Johns Hopkins University, Baltimore, MD 21218, USA
Neuroimage 31:125-38. 2006..The reliability of these estimates was assessed by comparing results based on data from one quadrant to those based on data from the full hemifield along with a split-half reliability analysis...
Inter- and intraobserver variation in HR-CTV contouring: intercomparison of transverse and paratransverse image orientation in 3D-MRI assisted cervix cancer brachytherapyPrimoz Petric
Department of Radiotherapy and Radiobiology, Medical University of Vienna, Vienna, Austria
Radiother Oncol 89:164-71. 2008..To analyze agreement between target volumes, delineated by two observers on transverse (T) and paratransverse (perpendicular to the long cervical axis - PT) MR images for cervix cancer brachytherapy...
Evaluation of reproducibility and reliability of 3D soft tissue analysis using 3D stereophotogrammetryJ M Plooij
3D Facial Imaging Research Group Nijmegen Bruges 3D FIRG, Department of Oral and Maxillofacial Surgery, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands
Int J Oral Maxillofac Surg 38:267-73. 2009..This shows that hard tissue data are not needed to perform accurate soft tissue analysis...
Direct three-dimensional myocardial strain tensor quantification and tracking using zHARPKhaled Z Abd-Elmoniem
Department of Radiology and Radiological Sciences, School of Medicine, Johns Hopkins University, Baltimore, MD 21287, USA
Med Image Anal 12:778-86. 2008..The performance and accuracy of the method is demonstrated in vitro on a phantom and in vivo in four healthy adult human subjects...
3D micro-CT imaging of the postmortem brainAlex de Crespigny
Athinoula A Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, MA 02129, USA
J Neurosci Methods 171:207-13. 2008..For simple measurements, such as tumor volume and non-destructive postmortem brain screening, microCT may prove to be a valuable alternative to standard histopathology or microMRI...
Discriminating power of localized three-dimensional facial morphologyPeter Hammond
Eastman Dental Institute, University College London, London, WC1X 8LD, United Kingdom
Am J Hum Genet 77:999-1010. 2005....
Analysis of barley (Hordeum vulgare) grain development using three-dimensional digital modelsSabine Gubatz
Leibniz Institute of Plant Genetics and Crop Plant Research IPK, Corrensstr 3, D 06466, Gatersleben, Germany
Plant J 52:779-90. 2007..At anthesis, mRNA of the protease nucellin was visualized in a distinct zone of the nucellus near the antipodal cells...
An Eulerian PDE approach for computing tissue thicknessAnthony J Yezzi
School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA 30322, USA
IEEE Trans Med Imaging 22:1332-9. 2003..These experiments reveal very good performance and show strong potential for application in tissue thickness visualization and quantification...
Morphogenesis and oncogenesis of MCF-10A mammary epithelial acini grown in three-dimensional basement membrane culturesJayanta Debnath
Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA 02115, USA
Methods 30:256-68. 2003....
The three-dimensional micro- and nanostructure of the aortic medial lamellar unit measured using 3D confocal and electron microscopy imagingMary K O'Connell
Department of Mechanical Engineering, Stanford University, Stanford, CA, USA
Matrix Biol 27:171-81. 2008..This high resolution three-dimensional view of the aortic media reveals MLU microstructure details that suggest a highly complex and integrated mural organization that correlates with aortic mechanical properties...
Wall shear stress on ruptured and unruptured intracranial aneurysms at the internal carotid arteryL D Jou
Department of Radiology, Baylor College of Medicine, Houston, TX 77030, USA
AJNR Am J Neuroradiol 29:1761-7. 2008..Flow impingement, greater pressure, and abnormal wall shear stress are all indications for aneurysm rupture. Characterizing wall shear stress for intracranial aneurysms at similar anatomic locations may help in understanding its role...
Usefulness of three-dimensional, multidetector row CT (virtual gastroscopy and multiplanar reconstruction) in the evaluation of gastric cancer: a comparison with conventional endoscopy, EUS, and histopathologySuryaprakash Bhandari
Institute for Digestive Research and Department of Radiology, Soon Chun Hyang University College of Medicine, Seoul, South Korea
Gastrointest Endosc 59:619-26. 2004..1%, 57%, and 89.5%; and 75%, 57.4%, and 89.3%. CONCLUSIONS: Three-dimensional multidetector row CT, along with virtual gastroscopy is a promising method for pre-operative evaluation of gastric cancer...
Two-photon 3-D mapping of ex vivo human skin endogenous fluorescence species based on fluorescence emission spectraLily H Laiho
Massachusetts Institute of Technology, Department of Mechanical Engineering, 77 Massachusetts Avenue, NE47 276, Cambridge, Massachusetts 02139, USA
J Biomed Opt 10:024016. 2005..Luminescence species identified include tryptophan, NAD(P)H, melanin, and elastin, which are autofluorescent, and collagen that contributes to a second harmonic signal...
Gastric cancer: preoperative local staging with 3D multi-detector row CT--correlation with surgical and histopathologic resultsChiao Yun Chen
Department of Medical Imaging, Kaohsiung Medical University, Chung Ho Memorial Hospital, 100 Tz You 1st Road, Kaohsiung, Taiwan
Radiology 242:472-82. 2007..To prospectively evaluate accuracy of multi-detector row computed tomographic (CT) images for preoperative staging of gastric cancer by using surgical and histopathologic results as reference standards...
Three-dimensional coronary MR angiography performed with subject-specific cardiac acquisition windows and motion-adapted respiratory gatingSven Plein
British Heart Foundation-Cardiac MRI Unit, Rm. 170, D Fl, Jubilee Building, Leeds General Infirmary, Great George Street, Leeds LS1 3EX, United Kingdom
AJR Am J Roentgenol 180:505-12. 2003....
Rapid automated three-dimensional tracing of neurons from confocal image stacksKhalid A Al-Kofahi
Electrical, Computer, and Systems Engineering Department, Rensselaer Polytechnic Institute, Troy, NY 12180 3590, USA
IEEE Trans Inf Technol Biomed 6:171-87. 2002..These properties make it attractive for large-scale automated tissue studies that require rapid on-line image analysis, such as high-throughput neurobiology/angiogenesis assays, and initiatives such as the Human Brain Project...
Registration of 3-D intraoperative MR images of the brain using a finite-element biomechanical modelM Ferrant
Communications and Remote Sensing Laboratory, Universite Catholique de Louvain, Louvain la Neuve, Belgium
IEEE Trans Med Imaging 20:1384-97. 2001..Cortical surface shifts of up to 10 mm and subsurface shifts of up to 6 mm were recovered with an accuracy of 1 mm or less and 3 mm or less respectively...
Mutual-information-based registration of medical images: a surveyJosien P W Pluim
University Medical Center Utrecht, Image Sciences Institute, Room E01 335, Heidelberglaan 100, 3584 CX Utrecht, The Netherlands
IEEE Trans Med Imaging 22:986-1004. 2003..Comparison studies including mutual information are also considered. The paper starts with a description of entropy and mutual information and it closes with a discussion on past achievements and some future challenges...
Rigid registration of 3-D ultrasound with MR images: a new approach combining intensity and gradient informationA Roche
INRIA Projet Epidaure, Sophia Antipolis, France
IEEE Trans Med Imaging 20:1038-49. 2001..A cross-validation study has been carried out using a number of phantom and clinical data. This indicates that the method is quite robust and that the worst registration errors are of the order of the MR image resolution...
Serial registration of intraoperative MR images of the brainMatthieu Ferrant
Communications and Remote Sensing Laboratory, , B-1348, Louvain-la-Neuve, Belgium
Med Image Anal 6:337-59. 2002..7+/-0.6 mm (mean+/-S.D.) for boundary surface landmarks, of 0.9+/-0.6 mm for landmarks inside the boundary surfaces, and 1.6+/-0.9 mm for landmarks in the vicinity of the tumor...
Visualization of flow patterns distal to aortic valve prostheses in humans using a fast approach for cine 3D velocity mappingS Kozerke
Institute of Biomedical Engineering, University of Zurich and Swiss Federal Institute of Technology, Switzerland
J Magn Reson Imaging 13:690-8. 2001..It is concluded that MR velocity mapping is a potential tool for studying 3D flow patterns evolving around heart valve prostheses in humans. J. Magn. Reson. Imaging 2001;13:690-698...
eF-site and PDBjViewer: database and viewer for protein functional sitesKengo Kinoshita
Graduate School of Integrated Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan
Bioinformatics 20:1329-30. 2004..AVAILABILITY: The eF-site database and PDBjViewer are freely available from http://www.pdbj.org/eF-site/..
Three-dimensional adaptive filtering in magnetic resonance angiographyC F Westin
Surgical Planning Laboratory, Brigham and Women s Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA
J Magn Reson Imaging 14:63-71. 2001..9 dB) were observed. 3D adaptive filtering may provide an alternative to prolonging the scan time or using contrast agents in MRA when the CNR is low...
Navigator-gated coronary magnetic resonance angiography using steady-state-free-precession: comparison to standard T2-prepared gradient-echo and spiral imagingElmar Spuentrup
Department of Diagnostic Radiology, Technical University of Aachen, Aachen, Germany
Invest Radiol 38:263-8. 2003..The purpose of this study was a systematic comparison of SSFP cMRA with standard T2-prepared gradient-echo and spiral cMRA...
Biphasic tissue Doppler waveforms during isovolumic phases are associated with asynchronous deformation of subendocardial and subepicardial layersPartho P Sengupta
Division of Cardiovascular Diseases, Mayo Clinic Rochester, 200 First St. SW, Rochester, MN 55905, USA
J Appl Physiol 99:1104-11. 2005..The results support an association between asynchronous deformation of subendocardial and subepicardial muscle fibers and the biphasic isovolumic movements observed with high-resolution tissue Doppler imaging...
Value of three-dimensional US for optimizing guidance for ablating focal liver tumorsS C Rose
Department of Radiology, University of California Medical Center, 200 West Arbor Drive, San Diego, CA 92103, USA
J Vasc Interv Radiol 12:507-15. 2001....
Improved visualization of coronary arteries using a new three-dimensional submillimeter MR coronary angiography sequence with balanced gradientsBenedetta Giorgi
Department of Radiology, Gasthuisberg University Hospital, Catholic University of Leuven, Herestraat 49, B-3000 Leuven, Belgium
AJR Am J Roentgenol 179:901-10. 2002....
Navigator-gated free-breathing three-dimensional balanced fast field echo (TrueFISP) coronary magnetic resonance angiographyElmar Spuentrup
Department of Medicine Cardiovascular Division, Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts, USA
Invest Radiol 37:637-42. 2002..It is hypothesized that Balanced-FFE may be valuable for contrast enhancement in 3D free-breathing coronary MRA...
Effects of noise, image resolution, and ROI definition on the accuracy of standard uptake values: a simulation studyRonald Boellaard
PET Center, VU University Medical Center, Amsterdam, The Netherlands
J Nucl Med 45:1519-27. 2004..Therefore, an experimental and simulation study was performed to determine the effects of noise, image resolution, and region-of-interest (ROI) definition on the accuracy of SUVs...
Nonrigid registration of 3D tensor medical dataJ Ruiz-Alzola
Medical Technology Center, University of Las Palmas de Gran Canaria and Gran Canaria Dr Negrín Hospital, Spain
Med Image Anal 6:143-61. 2002..The feasibility of the approach is illustrated by results on synthetic and clinical data...
The impact of contouring uncertainty on rectal 3D dose-volume data: results of a dummy run in a multicenter trial (AIROPROS01-02)Franca Foppiano
Department of Medical Physics, National Cancer Research Institute, Genova, Italy
Int J Radiat Oncol Biol Phys 57:573-9. 2003..To estimate the impact of the uncertainty in contouring the rectum on rectal dose-volume parameters and normal tissue complication probability (NTCP) in a prospective (AIROPROS01-02) investigation about rectal toxicity...
Accuracy of finite element model-based multi-organ deformable image registrationK K Brock
Radiation Medicine Program, Princess Margaret Hospital, University Health Network, 610 University Avenue, Toronto, Ontario, Canada M5G 2M9
Med Phys 32:1647-59. 2005....
Tomographic fluorescence mapping of tumor targetsXavier Montet
Center for Molecular Imaging Research, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA
Cancer Res 65:6330-6. 2005..FMT measurements can be done serially, with short imaging times and within the same live animal. The described method should be valuable for rapidly profiling biological phenomena in vivo...
Design and quantitative resolution measurements of an optical virtual sectioning three-dimensional imaging technique for biomedical specimens, featuring two-micrometer slicing resolutionJan A N Buytaert
University of Antwerp, Laboratory of Biomedical Physics, Department of Physics, Groenenborgerlaan 171, B 2020 Wilrijk Antwerpen, Belgium
J Biomed Opt 12:014039. 2007..We present quantitative measurements of resolution. A 3-D model reconstructed from our HROPFOS data is compared to SEM results, and the technique is demonstrated with section images and 3-D reconstructions of middle ear specimens...
Three-dimensional organization of higher-plant chloroplast thylakoid membranes revealed by electron tomographyEyal Shimoni
Electron Microscopy Unit, Weizman Institute of Science, Rehovot 76100, Israel
Plant Cell 17:2580-6. 2005..This highly connected morphology has important consequences for the formation and function of the thylakoid membranes as well as for their stacking/unstacking response to variations in light conditions...
Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approachA Cardona
Department of Molecular, Cell, and Developmental Biology, University of California at Los Angeles, Los Angeles, CA 90095, USA
Cold Spring Harb Symp Quant Biol 74:235-48. 2009..In this chapter, we introduce our efforts to reconstruct the small Drosophila larval brain and discuss our results in light of the published data on neuropile ultrastructure in other animal taxa...
Fast tracking of cardiac motion using 3D-HARPLi Pan
Department of Biomedical Engineering, Johns Hopkins School of Medicine, 601 N Caroline St JHOC 4240, Baltimore, MD 21287, USA
IEEE Trans Biomed Eng 52:1425-35. 2005..8605 and r2 = 0.8645, respectively. The total time required for tracking 3-D cardiac motion is approximately 10 min in a 9 timeframe tagged MRI dataset and has the potential to be much faster...
State of the art of fusion of computed tomography data and optical 3D imagesE Nkenke
Department of Oral and Maxillofacial Surgery, University of Erlangen Nuremberg, Germany
Int J Comput Dent 10:11-24. 2007..When streak artefacts are present, image fusion makes it possible to increase the quality of the data to the level of the original resolution of computed tomography without artefacts...
Automated electron microscope tomography using robust prediction of specimen movementsDavid N Mastronarde
Boulder Laboratory for Three Dimensional Electron Microscopy of Cells, Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80309, USA
J Struct Biol 152:36-51. 2005..It also includes tools for navigating between specimen positions and finding regions of interest...
Validation and reproducibility of a high-resolution three-dimensional facial imaging systemB Khambay
Glasgow Dental Hospital and School, 378 Sauchiehall Street, Glasgow, G2 3JZ, UK
Br J Oral Maxillofac Surg 46:27-32. 2008..To assess the accuracy and reproducibility of a high-resolution three-dimensional imaging system (Di3D)...
Picture perfect? Reliability of craniofacial anthropometry using three-dimensional digital stereophotogrammetryCarrie L Heike
Department of Pediatrics, Division of Craniofacial Medicine, University of Washington and Seattle Children s Hospital, Seattle, Wash 98105 5371, USA
Plast Reconstr Surg 124:1261-72. 2009..Three-dimensional surface imaging systems offer a quick and practical method for quantifying craniofacial variation and appear to be highly reliable. However, some sources of measurement error have not yet been thoroughly evaluated...
Three-dimensional imaging of Drosophila melanogasterLeeanne McGurk
Medical Research Council Human Genetics Unit, Edinburgh, United Kingdom
PLoS ONE 2:e834. 2007..The data is displayed as 2D optical sections and also in 3D to provide detail on the shape and structure of the adult anatomy...
Three-dimensional textural analysis of brain images reveals distributed grey-matter abnormalities in schizophreniaBalaji Ganeshan
Clinical Imaging Sciences Centre, Brighton and Sussex Medical School, University of Sussex, Falmer, Brighton, UK
Eur Radiol 20:941-8. 2010....
Key parameters of face shape variation in 3D in a large sampleMartin Evison
Forensic Science Program, University of Toronto Mississauga, Mississauga, ON, Canada
J Forensic Sci 55:159-62. 2010..We anticipate this approach will lend itself to the development of methods for analysis of variation within subject groups and the establishment of the relative uniqueness or abundance of facial measurements within them...
Airflow limitation and airway dimensions in chronic obstructive pulmonary diseaseMasaru Hasegawa
First Department of Medicine, Hokkaido University School of Medicine, N-15 W-7 Kita-ku, Sapporo 060-8638, Japan
Am J Respir Crit Care Med 173:1309-15. 2006..73 for B8). CONCLUSIONS: We are the first to use three-dimensional computed tomography to demonstrate that airflow limitation in COPD is more closely related to the dimensions of the distal (small) airways than proximal (large) airways...
An efficient virtual dissection tool to create generic models for anatomical atlasesMei Xiao
Department of Biochemistry and Molecular Biology, University of Calgary, Calgary, Canada
Stud Health Technol Inform 142:426-8. 2009..The technique optimizes the functionalities of existing toolkits and the resulting software package will allow biologists to build their atlases more quickly and accurately...
Time-resolved 3-dimensional velocity mapping in the thoracic aorta: visualization of 3-directional blood flow patterns in healthy volunteers and patientsMichael Markl
Department of Radiology, Stanford University, Stanford, CA 94304, USA
J Comput Assist Tomogr 28:459-68. 2004..Various visualization tools were used to analyze blood flow patterns within a single 3-component velocity volumetric acquisition of the entire thoracic aorta..
Multislice CT angiography of fenestrated endovascular stent grafting for treating abdominal aortic aneurysms: a pictorial review of the 2D/3D visualizationsZhonghua Sun
Discipline of Medical Imaging, Department of Imaging and Applied Physics, Curtin University of Technology, Perth, Western Australia, Australia
Korean J Radiol 10:285-93. 2009..The potential applications of each visualization technique were explored and compared with the 2D axial images...
MicroCT for comparative morphology: simple staining methods allow high-contrast 3D imaging of diverse non-mineralized animal tissuesBrian D Metscher
Department of Theoretical Biology, Gerd Müller, University of Vienna, Althanstrasse 14, 1090 Austria
BMC Physiol 9:11. 2009..Although osmium staining and a few other techniques have been used for contrast enhancement, generally useful methods for microCT imaging for comparative morphology are still lacking...
3D myocardial tissue tracking with slice followed cine DENSE MRIBruce S Spottiswoode
UCT MRC Medical Imaging Research Unit, University of Cape Town, South Africa
J Magn Reson Imaging 27:1019-27. 2008..To track three-dimensional (3D) myocardial tissue motion using slice followed cine displacement encoded imaging with stimulated echoes (DENSE)...
Update in three-dimensional imaging in facial plastic surgeryCarlo P Honrado
Larrabee Center for Facial Plastic Surgery, 600 Broadway, Suite 280, Seattle, WA 98122, USA
Curr Opin Otolaryngol Head Neck Surg 12:327-31. 2004..Recent advances in technology have made three-dimensional imaging and analysis possible...
Three-dimensional reconstruction allows accurate quantification and length measurements of coronary artery stenosesHarald Rittger
Medizinische Klinik II, Klinikum Coburg, Coburg, Germany
EuroIntervention 5:127-32. 2009..Israel) as compared to a validated quantitative coronary angiography (QCA) system (Siemens Quantcor, Siemens Medical Solutions)...
MR diagnosis of a pulmonary embolism: comparison of P792 and Gd-DOTA for first-pass perfusion MRI and contrast-enhanced 3D MRA in a rabbit modelShella D Keilholz
Department of Biomedical Engineering, Emory University, Atlanta, GA, USA
Korean J Radiol 10:447-54. 2009....
Fast interactive integration of cross-sectional image datasets and surface data for morphometric analysisOscar Meruvia-Pastor
Department of Biochemistry and Molecular Biology, University of Calgary, Canada
Stud Health Technol Inform 142:183-8. 2009..Our system is interactive, fully scalable and can be applied to any photographic sliced dataset, regardless of subject and reduces significantly the processing time for stack alignment...
Coronary CT angiography: automatic cardiac-phase selection for image reconstructionBalazs Ruzsics
Department of Radiology and Radiological Science, Medical University of South Carolina, Ashley River Tower, 25 Courtenay Dr, Charleston, SC 29401, USA
Eur Radiol 19:1906-13. 2009..The use of automatic phase finding may therefore facilitate the performance of cardiac CT and reduce human error...
CATMAID: collaborative annotation toolkit for massive amounts of image dataStephan Saalfeld
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
Bioinformatics 25:1984-6. 2009..The CATMAID interface enables synchronized navigation through multiple registered datasets even at vastly different scales such as in comparisons between optical and electron microscopy. AVAILABILITY: http://fly.mpi-cbg.de/catmaid...
Segmenting and tracking the left ventricle by learning the dynamics in cardiac imagesW Sun
Laboratory for Information and Decision Systems, Massachusetts Institute of Technology, Cambridge, MA, USA
Inf Process Med Imaging 19:553-65. 2005..We observe that our approach provides more accurate segmentations than those from static image segmentation techniques, especially when the observed data are of limited quality...
A statistical parts-based model of anatomical variabilityMatthew Toews
Centre for Intelligent Machines, McGill University, Montreal, QC H3A 2A7, Canada
IEEE Trans Med Imaging 26:497-508. 2007..Additionally, it is shown that unlike global models such as the AAM, PBM fitting is stable in the presence of unexpected, local perturbation...
A deformable registration method for automated morphometry of MRI brain images in neuropsychiatric researchDaniel Schwarz
Masaryk University, Institute of Biostatistics and Analyses, 625 00 Brno, Czech Republic
IEEE Trans Med Imaging 26:452-61. 2007..Results of application of the method in automated spatial detection of anatomical abnormalities in first-episode schizophrenia are presented...
Probabilistic brain atlas encoding using Bayesian inferenceKoen Van Leemput
Helsinki Medical Imaging Center, Helsinki University Central Hospital, Finland
Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 9:704-11. 2006..We believe extracting optimal prior probability distributions from training data is crucial in light of the central role priors play in many automated brain MRI analysis techniques...
A statistical parts-based appearance model of inter-subject variabilityMatthew Toews
Centre for Intelligent Machines, McGili University, Montreal, Canada
Med Image Comput Comput Assist Interv 9:232-40. 2006..Preliminary results indicate that the model can be used to automatically identify distinctive features for inter-subject image registration despite large changes in appearance...
Morphometric analysis for pathological abnormality detection in the skull vaults of adolescent idiopathic scoliosis girlsLin Shi
Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, N T, Hong Kong, China
Med Image Comput Comput Assist Interv 9:175-82. 2006..The results of this study specify the skull vault surface changes and shed light on building the evidence of bone formation abnormality in AIS girls...
Nonrigid image registration using conditional mutual informationDirk Loeckx
Medical Image Computing, Faculties of Medicine and Engineering, Katholieke Universiteit Leuven, University Hospital Gasthuisberg, Herestraat 49 bus 7003, B 3000 Leuven, Belgium
Inf Process Med Imaging 20:725-37. 2007..Moreover, cMI is compared to global MI for the registration of three patient CT/MR datasets, using overlap and centroid distance as validation measure. The best results are obtained using cMI...
Active shape models for a fully automated 3D segmentation of the liver--an evaluation on clinical dataTobias Heimann
Medical and Biological Informatics, German Cancer Research Center, Heidelberg
Med Image Comput Comput Assist Interv 9:41-8. 2006..The deformable model search achieves the best results, followed by the ASM search with 30 modes. Overall, statistical shape modeling delivers very promising results for a fully automated segmentation of the liver...
A unified information-theoretic approach to groupwise non-rigid registration and model buildingCarole J Twining
Imaging Science and Biomedical Engineering (ISBE, Stopford Building, University of Manchester, Manchester, UK
Inf Process Med Imaging 19:1-14. 2005....
Multimodality image registration using an extensible information metric and high dimensional histogrammingJie Zhang
Dept of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611 6120, USA
Inf Process Med Imaging 19:725-37. 2005..Our results demonstrate the efficacy of the metrics and high-dimensional histogramming in affine, multimodality image registration...
Multiclassifier fusion in human brain MR segmentation: modelling convergenceRolf A Heckemann
Imaging Sciences Department, MRC Clinical Sciences Centre, Imperial College at Hammersmith Hospital Campus, London, UK
Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 9:815-22. 2006..Fit parameters of this model are potential indicators of the quality of a given label propagation method or the consistency of the input segmentations used...
Genetic algorithms for finite mixture model based voxel classification in neuroimagingJussi Tohka
Laboratory of Neuro Imaging, Department of Neurology, UCLA School of Medicine, University of California, Los Angeles, CA 90095, USA
IEEE Trans Med Imaging 26:696-711. 2007..The tissue classification results by our method are shown to be consistently more reliable and accurate than with the competing parameter estimation methods...
Multiple abdominal organ segmentation: an atlas-based fuzzy connectedness approachYongxin Zhou
Department of Biomedical Engineering, Tsinghua University, Beijing 100084, China
IEEE Trans Inf Technol Biomed 11:348-52. 2007..This atlas-based segmentation method has been tested on some abdominal CT and MRI images from Chinese patients. Experimental results indicate the validity of this segmentation method for various image modalities...
Probabilistic streamline q-ball tractography using the residual bootstrapJeffrey I Berman
UCSF Department of Radiology, University of California San Francisco, 185 Berry St, Suite 350, San Francisco, CA 94107, USA
Neuroimage 39:215-22. 2008..This fiber tracking algorithm is an improvement upon prior diffusion tensor methods and the q-ball data can be acquired in a clinically feasible time frame...
Live-wire-based 3D segmentation methodWojciech Wiecławek
Division of Biomedical Electronics, Institute of Electronics, Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, ul Akademicka 16, 44 100 Gliwice, Poland
Conf Proc IEEE Eng Med Biol Soc 2007:5646-9. 2007..It does not require users interaction. The method has been employed to Magnetic Resonance Imaging (MRI) and X-Ray Computed Tomography (CT) studies. Additionally, noise resistance of the 3D approach has been measured...
Simulation and fully automatic multimodal registration of medical ultrasoundWolfgang Wein
Imaging and Visualization Department, Siemens Corporate Research, Princeton, NJ, USA
Med Image Comput Comput Assist Interv 10:136-43. 2007..We also present the used initialization, global and local parameter optimization schemes, and validation on abdominal CTA and ultrasound imaging of 10 patients...
Groupwise combined segmentation and registration for atlas constructionKanwal K Bhatia
Visual Information Processing, Department of Computing, Imperial College London
Med Image Comput Comput Assist Interv 10:532-40. 2007..These have been used to quantify the growth of tissues occurring between these ages...
Thoracic CT-PET registration using a 3D breathing modelAntonio Moreno
Ecole Nationale Supérieure des Télécommunications GET Télécom Paris, CNRS UMR 5141 LTCI Signal and Image Processing Department, Paris, France
Med Image Comput Comput Assist Interv 10:626-33. 2007..Initial results demonstrate the interest of this method to significantly improve the accuracy of multimodal volume registration for diagnosis and radiotherapy applications...
Surface modeling--uncertainty estimation and visualizationPawel Drapikowski
Poznan University of Technology, Institute of Control and Information Engineering, ul Piotrowo 3a, 60 965 Poznan, Poland
Comput Med Imaging Graph 32:134-9. 2008..A quality visualisation of the errors in the geometric model has been presented in the form of a colour scale, and a quantity visualisation in the form of a ribbon, whose width is proportional to the uncertainty model...
Joint segmentation-registration of organs using geometric modelsAlper Ayvaci
Department of Computer Science, Rensselaer Polytechnic Institute, 110 8th Street, Troy, NY 12180, USA
Conf Proc IEEE Eng Med Biol Soc 2007:5251-4. 2007..Furthermore, to reduce the computational cost, the algorithm is designed to run on watershed regions instead of voxels. The accuracy of the algorithm is shown on the medical examples...
Research Grants
- MICROSCOPY & IMAGE ANALYSIS OF UNSTAINED MACROMOLECULESTimothy Baker; Fiscal Year: 1993..g. by correcting for phase contrast transfer effects or by averaging very large numbers of particle images), and vii) to phase x-ray crystallographic data with models derived from density maps reconstructed from micrographs...
- A New Integrated Endoscope SystemLIH LIN; Fiscal Year: 2009..PHS 398/2590 (Rev. 09/04, Reissued 4/2006) Page 1 Continuation Format Page ..
- A New Integrated Endoscope SystemLih Y Lin; Fiscal Year: 2010..PHS 398/2590 (Rev. 09/04, Reissued 4/2006) Page 1 Continuation Format Page ..
- Three-Dimensional Imaging of Whole Cells by Using X-ray Diffraction MicroscopyJianwei Miao; Fiscal Year: 2010..This novel imaging technique will be applied to the localization of multiprotein complexes inside whole cells. ..
- Three-Dimensional Imaging of Whole Cells by Using X-ray Diffraction MicroscopyJianwei Miao; Fiscal Year: 2009..This novel imaging technique will be applied to the localization of multiprotein complexes inside whole cells. ..
- Posterior glenohumeral capsule influence on shoulder impingementJOHN BORSTAD; Fiscal Year: 2007..The findings of this research are likely to improve shoulder rehabilitation, decrease patient impairment and disability, prevent impingement, and lower health care costs. ..
- DEVELOPING VIRTUAL COLONOSCOPY FOR CANCER SCREENINGJEROME LIANG; Fiscal Year: 2007....
- Focal Structure-Function Relationships in Macular Layers from 3D Spectral OCTMilan Sonka; Fiscal Year: 2009..This study has potentially important consequences for glaucoma, anterior ischemic neural neuropathy, and other retinal disease diagnosis and treatment. ..
- Focal Structure-Function Relationships in Macular Layers from 3D Spectral OCTMILAN contact SONKA; Fiscal Year: 2010..This study has potentially important consequences for glaucoma, anterior ischemic neural neuropathy, and other retinal disease diagnosis and treatment. ..
- 3-D Imaging Technique for Applications in AnthropomePEISEN HUANG; Fiscal Year: 2002..The effectiveness of lung volume reduction surgery (LVRS) will be evaluated. The technique developed in this research should have numerous other medical as well as engineering applications. ..
- High Resolution Multiplexed Fluorescence TomographyMARK JONATHAN NIEDRE; Fiscal Year: 2010..We anticipate that the scanner will have many applications in biomedical research including studying disease development and response to novel therapeutics in vivo. ..
- Biomechanics of Spine FractureTONY KEAVENY; Fiscal Year: 2007..abstract_text> ..
- Image Reconstruction Algorithms for Optical TomographyJOHN SCHOTLAND; Fiscal Year: 2009..We will utilize the parallel plate imaging geometry which is often employed in optical mammography. The results of this research are expected to impact the design of clinically useful instruments for noncontact optical tomography. ..
- Image Reconstruction Algorithms for Optical TomographyJOHN SCHOTLAND; Fiscal Year: 2007..We will utilize the parallel plate imaging geometry which is often employed in optical mammography. The results of this research are expected to impact the design of clinically useful instruments for noncontact optical tomography. ..
- An Electron Microscope for the study of Complex Biological AssembliesMICHAEL ROSSMANN; Fiscal Year: 2006..The instrument would also allow us to perform tomographic studies at about 50 A resolution on pleomorphic viruses and cell organelles that lack structural homogeneity. ..
- LOW-MOLECULAR WEIGHT LIGANDS FOR PROSTATE CANCERJOHN FRANGIONI; Fiscal Year: 2003..We believe that prostate- specific, low-molecular weight ligands will someday be clinically useful reagents for improved prostate cancer detection and guided therapy. ..
- Ophthalmic Imaging Using Adaptive Optics and OCTJohn Werner; Fiscal Year: 2007The purpose of this BRP is to develop and evaluate new instrumentation that will permit unprecedented three dimensional imaging of single cells in the human retina, specifically rod and cone photoreceptors and ganglion cells...
