Genomes and Genes
automatic data processing
Summary: Data processing largely performed by automatic means.
Publications266 found, 100 shown here
- Identification of Birds through DNA BarcodesPaul D N Hebert
Department of Zoology, University of Guelph, Guelph, Ontario, Canada
PLoS Biol 2:e312. 2004..The growing evidence for the effectiveness of DNA barcodes as a basis for species identification supports an international exercise that has recently begun to assemble a comprehensive library of COI sequences linked to named specimens...
- DNA barcoding: error rates based on comprehensive samplingChristopher P Meyer
Florida Museum of Natural History, University of Florida, Gainesville, Florida, USA
PLoS Biol 3:e422. 2005..However, the use of thresholds does not bode well for delineating closely related species in taxonomically understudied groups. The promise of barcoding will be realized only if based on solid taxonomic foundations...
- DNA barcoding Australia's fish speciesRobert D Ward
CSIRO Marine and Atmospheric Research, GPO Box 1538, Hobart, Tasmania 7001, Australia
Philos Trans R Soc Lond B Biol Sci 360:1847-57. 2005..We conclude that cox1 sequencing, or 'barcoding', can be used to identify fish species...
- A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer regionW John Kress
Department of Botany, National Museum of Natural History, Smithsonian Institution, Washington, DC, United States of America
PLoS ONE 2:e508. 2007..This low rate has complicated the trade-off in finding a locus that is universal and readily sequenced and has sufficiently high sequence divergence at the species-level...
- DNA barcodes for 1/1000 of the animal kingdomPaul D N Hebert
Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada, N1G 2W1
Biol Lett 6:359-62. 2010..As most terrestrial and marine taxa are likely to possess a similar pattern of population structure, an effective DNA-based identification system can be developed with modest effort...
- Use of DNA barcodes to identify flowering plantsW John Kress
Department of Botany and Laboratories of Analytical Biology, National Museum of Natural History, Smithsonian Institution, P O Box 37012, Washington, DC 20013 7012
Proc Natl Acad Sci U S A 102:8369-74. 2005....
- MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identificationsW Hayes McDonald
Department of Cell Biology, The Scripps Research Institute, La Jolla, CA, USA
Rapid Commun Mass Spectrom 18:2162-8. 2004....
- DNA barcoding a useful tool for taxonomistsDavid E Schindel
Nature 435:17. 2005
- DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycadsChodon Sass
Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, California, United States of America
PLoS ONE 2:e1154. 2007..We suggest a workflow for DNA barcoding, including database generation and management, which will ultimately be necessary if we are to succeed in establishing a universal DNA barcode for plants...
- jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formatsJohannes Griss
EMBL European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
Proteomics 12:795-8. 2012..The library (which includes a viewer) is open source and, together with detailed documentation, can be downloaded from http://code.google.com/p/jmzreader/...
- DNA barcodes for biosecurity: invasive species identificationK F Armstrong
National Centre for Advanced Bio Protection Technologies, PO Box 84, Lincoln University, Canterbury, New Zealand
Philos Trans R Soc Lond B Biol Sci 360:1813-23. 2005..This approach is a realistic platform on which to build a much more flexible system, with the potential to be adopted globally for the rapid and accurate identification of invasive alien species...
- mProphet: automated data processing and statistical validation for large-scale SRM experimentsLukas Reiter
Biognosys AG, Zurich, Switzerland
Nat Methods 8:430-5. 2011....
- Nonlinear information processing in a model sensory systemMaurice J Chacron
Department of Zoology, University of Oklahoma, 730 Van Vleet Oval, Norman, OK 73019, USA
J Neurophysiol 95:2933-46. 2006..These results show that nonlinear decoders are necessary to fully access information in pyramidal cell spike trains, and we discuss potential mechanisms by which higher-order neurons could decode this information...
- Quantifying data quality for clinical trials using electronic data captureMeredith L Nahm
Duke Translational Medicine Institute, Durham, North Carolina, United States of America
PLoS ONE 3:e3049. 2008..Electronic Data Capture (EDC) technology has had a further impact, as paper CRFs typically leveraged for quality measurement are not used in EDC processes...
- Automatic analysis of single-channel sleep EEG: validation in healthy individualsChristian Berthomier
PHYSIP SA, Paris, France
Sleep 30:1587-95. 2007..To assess the performance of automatic sleep scoring software (ASEEGA) based on a single EEG channel comparatively with manual scoring (2 experts) of conventional full polysomnograms...
- Identification of Amazonian trees with DNA barcodesMailyn Adriana Gonzalez
Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier and CNRS, UMR 5174, Toulouse, France
PLoS ONE 4:e7483. 2009..Large-scale plant diversity inventories are critical to develop informed conservation strategies. However, the workload required for classic taxonomic surveys remains high and is particularly problematic for megadiverse tropical forests...
- The promise of a DNA taxonomyMark L Blaxter
Institute of Cell, Animal and Population Biology, University of Edinburgh, King s Buildings, Edinburgh EH9 3JT, UK
Philos Trans R Soc Lond B Biol Sci 359:669-79. 2004..Previous molecular taxonomic efforts have focused narrowly. Advances in high-throughput sequencing methodologies, however, place the idea of a universal, multi-locus molecular barcoding system in the realm of the possible...
- DNA barcoding does not compete with taxonomyT Ryan Gregory
Nature 434:1067. 2005
- DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of MadagascarM Alex Smith
Barcode of Life Initiative, Biodiversity Institute of Ontario, Department of Integrative Biology, University of Guelph, Guelph, ON, Canada N1G 2W1
Philos Trans R Soc Lond B Biol Sci 360:1825-34. 2005..Such high divergences highlight taxa for further detailed genetic, morphological, life history, and behavioral studies...
- Four years of DNA barcoding: current advances and prospectsLise Frezal
Laboratoire de Biologie Intégrative des Populations, Ecole Pratique des Hautes Etudes, Paris, France
Infect Genet Evol 8:727-36. 2008..The initially proposed Barcode of life framework has greatly evolved, giving rise to a flexible description of DNA barcoding and a larger range of applications...
- Challenges of automated screening and differentiation of non-organ specific autoantibodies on HEp-2 cellsRico Hiemann
Department of Biology, Chemistry and Process Technology, Lausitz University of Applied Sciences, Senftenberg, Germany
Autoimmun Rev 9:17-22. 2009..More sophisticated pattern recognition algorithms and novel calibration systems will improve standardised quantifications of IIF image interpretation...
- Towards writing the encyclopedia of life: an introduction to DNA barcodingVincent Savolainen
Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK
Philos Trans R Soc Lond B Biol Sci 360:1805-11. 2005..g. cox1 = CO1, in animals), (iii) promoting development of handheld DNA sequencing technology that can be applied in the field for biodiversity inventories and (iv) providing insight into the diversity of life...
- How many loci does it take to DNA barcode a crocus?Ole Seberg
Laboratory of Molecular Systematics, Natural History Museum of Denmark, Copenhagen, Denmark
PLoS ONE 4:e4598. 2009..Most tests have been made in a floristic setting, where the genetic distance and therefore the level of variation of the regions between taxa is large, or in a limited set of congeneric species...
- jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitionsKenny Helsens
Department of Medical Protein Research, VIB, Ghent, Belgium
J Proteome Res 10:5260-3. 2011..The library is released as open source under the permissive Apache2 license and can be downloaded from http://jtraml.googlecode.com . TraML files can also be converted online at http://iomics.ugent.be/jtraml ...
- A patient-completed and optically read data acquisition system for clinical trialsHue Quan
Regional Palliative Care Program, Alberta Health Services, Edmonton, Alberta, Canada
Contemp Clin Trials 32:173-7. 2011..Preliminary results from a modest study sample size support the use of optically read forms for data collection by patients and their families, requiring only a pen, paper, and fax machine at participating sites...
- Automated structure determination from NMR spectraPeter Güntert
Institute of Biophysical Chemistry, Goethe University Frankfurt am Main, Max von Laue Str 9, 60438 Frankfurt am Main, Germany
Eur Biophys J 38:129-43. 2009....
- Enhancing surveillance for hepatitis C through public health informaticsDawn M Heisey-Grove
Massachusetts Department of Public Health, Bureau of Infectious Disease Prevention, Response and Services, William A Hinton State Laboratory Institute, 305 South St, Jamaica Plain, MA 02130, USA
Public Health Rep 126:13-8. 2011..These changes have resulted in an increase in the timeliness of reporting...
- A comparison of the completeness and timeliness of automated electronic laboratory reporting and spontaneous reporting of notifiable conditionsJ Marc Overhage
Regenstrief Institute, 410 W 10th St, Suite 2000, Indianapolis, IN 46202 3012, USA
Am J Public Health 98:344-50. 2008..We examined whether automated electronic laboratory reporting of notifiable-diseases results in information being delivered to public health departments more completely and quickly than is the case with spontaneous, paper-based reporting...
- DNA barcoding is no substitute for taxonomyMalte C Ebach
Nature 434:697. 2005
- DNA barcoding: promise and pitfallsCraig Moritz
PLoS Biol 2:e354. 2004
- Automated cell lineage tracing in Caenorhabditis elegansZhirong Bao
Department of Genome Sciences, University of Washington, WA 98195, USA
Proc Natl Acad Sci U S A 103:2707-12. 2006..We envision that this automation will make it practical to systematically decipher the developmental genes and pathways encoded in the genome of C. elegans...
- Slow mitochondrial COI sequence evolution at the base of the metazoan tree and its implications for DNA barcodingDanwei Huang
Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543, Singapore
J Mol Evol 66:167-74. 2008..Caution is also advised for Porifera and Hydrozoa because of relatively low identification success rates as even threshold divergence that maximizes the "barcoding gap" does not improve identification success...
- Quantitative phenotyping via deep barcode sequencingAndrew M Smith
Department of Molecular Genetics, University of Toronto, Ontario, Canada
Genome Res 19:1836-42. 2009..Together, this new assay and analysis routine provide a deep-sequencing-based toolkit for identifying gene-environment interactions on a genome-wide scale...
- Data analysis and bioinformatics tools for tandem mass spectrometry in proteomicsEric W Deutsch
Institute for Systems Biology, Seattle, Washington 98103, USA
Physiol Genomics 33:18-25. 2008..In this review, we provide an overview of the general analysis approaches, software tools, and repositories that are enabling successful proteomics research via tandem mass spectrometry...
- Patient-specific early seizure detection from scalp electroencephalogramGEORGIY R MINASYAN
Chatten Associates, Inc, West Conshohocken, Pennsylvania, USA
J Clin Neurophysiol 27:163-78. 2010..The unique results of this study relate to preonset detection. Our results suggest that reliable preonset seizure detection may be achievable for a significant subset of patients with epilepsy without use of invasive electrodes...
- Electronic measurement of adherence to pediatric antiretroviral therapy in South AfricaAlexandra D Muller
Department of Medical Psychology and Medical Sociology, Georg August University Gottingen, Germany
Pediatr Infect Dis J 27:257-62. 2008..Both assessment methods and predictors of adherence need to be examined to deliver appropriate health care to the growing patient population in resource-limited settings...
- Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcodingDaniel H Janzen
Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA
Philos Trans R Soc Lond B Biol Sci 360:1835-45. 2005....
- Validity of inspiratory and expiratory methods of measuring gas exchange with a computerized systemD R Bassett
Department of Exercise Science and Sport Management, University of Tennessee, Knoxville, Tennessee 37996 2700, USA
J Appl Physiol (1985) 91:218-24. 2001..0004, FE(CO(2)) = -0.0003, VO(2) = -0.018 l/min). Thus a computerized system, using inspiratory or expiratory configurations, permits extremely precise measurements to be made in a less time-consuming manner than the DB technique...
- Time and motion study to compare electronic and hybrid data collection systems during the pandemic (H1N1) 2009 influenza vaccination campaignSusan Quach
Surveillance and Epidemiology, Ontario Agency for Health Protection and Promotion, Toronto, Canada
Vaccine 29:1997-2003. 2011..Electronic registration and record keeping were faster than paper-based methods; these findings should be used to improve data collection for future influenza seasons...
- Deciphering amphibian diversity through DNA barcoding: chances and challengesMiguel Vences
Institute for Biodiversity and Ecosystem Dynamics, Zoological Museum, University of Amsterdam, Mauritskade 61, 1092 AD Amsterdam, The Netherlands
Philos Trans R Soc Lond B Biol Sci 360:1859-68. 2005..We suggest that a number of mitochondrial and nuclear genes may be used as DNA barcoding markers to complement cox1...
- Automated seizure onset detection for accurate onset time determination in intracranial EEGAlexander M Chan
Harvard MIT Division of Health Sciences and Technology, Medical Engineering and Medical Physics Program, 77 Massachusetts Avenue, E25 519, Cambridge, MA 02139, USA
Clin Neurophysiol 119:2687-96. 2008..A novel algorithm for automated seizure onset detection is presented. The method allows for precise identification of electrographic seizure onset times within large databases of electrographic data...
- Critical factors for assembling a high volume of DNA barcodesMehrdad Hajibabaei
Biodiversity Institute of Ontario, Department of Integrative Biology, University of Guelph, Guelph, ON, Canada N1G 2W1
Philos Trans R Soc Lond B Biol Sci 360:1959-67. 2005..Barcode analysis is already a cost-effective option for species identification in some situations and this will increasingly be the case as reference libraries are assembled and analytical protocols are simplified...
- Automated surveillance of health care-associated infectionsMichael Klompas
Infection Control Department, Channing Laboratory, Brigham and Women s Hospital and Harvard Medical School, Boston, Massachusetts, USA
Clin Infect Dis 48:1268-75. 2009..The efficiency and objectivity of these methods make them promising candidates for more manageable and meaningful benchmarking within and between facilities...
- Automatic processing of multilingual medical terminology: applications to thesaurus enrichment and cross-language information retrievalH Déjean
Xerox Research Centre Europe, 6 Chemin de Maupertuis, F 38240 Meylan, France
Artif Intell Med 33:111-24. 2005..For such applications, multilingual terminology plays a crucial role when working on specialized languages and specific domains...
- Prospective study of clinician-entered research data in the Emergency Department using an Internet-based system after the HIPAA Privacy RuleJeffrey A Kline
Department of Emergency Medicine, Carolinas Medical Center, Charlotte, NC, USA
BMC Med Inform Decis Mak 4:17. 2004..Design and test the reliability of a web-based system for multicenter, real-time collection of data in the emergency department (ED), under waiver of authorization, in compliance with HIPAA...
- Improving response to critical laboratory results with automation: results of a randomized controlled trialG J Kuperman
Partners HealthCare System, Department of Information Systems, Chestnut Hill, Massachusetts 02467, USA
J Am Med Inform Assoc 6:512-22. 1999..To evaluate the effect of an automatic alerting system on the time until treatment is ordered for patients with critical laboratory results...
- Electronic data capture (EDC)--a new mantra for clinical trialsUmakanta Sahoo
ClinInvent Research Private Limited, A 302 Everest Chambers, Marol Naka, Andheri Kurla Road, Andheri E, Mumbai 400 059, India
Qual Assur 10:117-21. 2003..Finally, the article concludes emphasizing the fact that EDC is the future mantra for the clinical trials and all stake holders should face challenges of infrastructure, technology, regulations, and training to make it a success...
- Standards for the terminology and labeling of cellular therapy productsPaul Ashford
J Clin Apher 22:249-57. 2007
- Standards for the terminology and labeling of cellular therapy productsPaul Ashford
International Cellular Therapy Coding and Labeling Advisory Group, Redlands, CA 92374, USA
Transfusion 47:1319-27. 2007
- Species discovery versus species identification in DNA barcoding efforts: response to RubinoffRob DeSalle
Division of Invertebrates, American Museum of Natural History, New York, NY 10024, USA
Conserv Biol 20:1545-7. 2006
- ISBT 128 implementation plan for cellular therapy productsPaul Ashford
International Cellular Therapy Coding and Labeling Advisory Group, Redlands, CA 92374, USA
Transfusion 47:1312-8. 2007
- DNA barcoding and the renaissance of taxonomyScott E Miller
Office of the Under Secretary for Science, Smithsonian Institution, Washington, DC 20013 7012, USA
Proc Natl Acad Sci U S A 104:4775-6. 2007
- Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applicationsGary W Saunders
Centre for Environmental and Molecular Algal Research, Department of Biology, University of New Brunswick Fredericton, NB, Canada E3B 6E1
Philos Trans R Soc Lond B Biol Sci 360:1879-88. 2005..In all cases the DNA barcode resolved accurately and unequivocally species identities and, with the enhanced sampling here, turned up a variety of novel observations in need of further taxonomic investigation...
- Now is the timeDaniel H Janzen
Department of Biology, University of Pennsylvania, Philadelphia 19104, USA
Philos Trans R Soc Lond B Biol Sci 359:731-2. 2004
- Tight data-robust bounds to mutual information combining shuffling and model selection techniquesM A Montemurro
Neural Comput 19:2913-57. 2007..This application shows that even in the presence of strong correlations, our methods constrain precisely the amount of information encoded by real spike trains recorded in vivo...
- Inferring species membership using DNA sequences with back-propagation neural networksA B Zhang
Institute of Zoology, Chinese Academy of Sciences, Beijing 100080, P R China
Syst Biol 57:202-15. 2008..Particularly in cases involving incomplete lineage sorting, this new BP-based method appears to be superior to commonly used methods for DNA-based species identification...
- Practical applications of usability theory to electronic data collection for clinical trialsJordana K Schmier
Exponent, 1800 Diagonal Road, Suite 300, Alexandria, VA 22314, United States
Contemp Clin Trials 26:376-85. 2005..Lessons learned from usability testing in the unique setting of the clinical trial can be applied to other projects to decrease costs, enhance the quality of the data, and minimize time to analysis...
- Validation of automated forms processing. A comparison of Teleform with manual data entryC K Jørgensen
Research Unit, University of Aarhus, Denmark
Comput Biol Med 28:659-67. 1998..AFP reduced processing time, but we found that a very large number of forms need to be processed in order to recover the initial investment. A considerable amount of time and computer expertise was required for implementation of AFP...
- Phenetic and DNA taxonomy; a comment on WaughRob DeSalle
Bioessays 29:1289-90. 2007
- BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositionsJohn L Markley
Department of Biochemistry, University of Wisconsin Madison, Madison, WI 53706 1544, USA
J Biomol NMR 40:153-5. 2008..The BMRB now contains an archive of NMR data for metabolites and other small molecules found in biological systems...
- Land plants and DNA barcodes: short-term and long-term goalsMark W Chase
Jodrell Laboratory, Royal Botanic Gardens, Kew Richmond, Surrey TW9 3DS, UK
Philos Trans R Soc Lond B Biol Sci 360:1889-95. 2005....
- Identification of Dendrobium species by a candidate DNA barcode sequence: the chloroplast psbA-trnH intergenic regionHui Yao
Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing 100193, PR China
Planta Med 75:667-9. 2009..5 %. Our results support the notion that the psbA-trnH intergenic spacer region could be used as a barcode to distinguish various Dendrobium species and to differentiate Dendrobium species from other adulterating species...
- Defining operational taxonomic units using DNA barcode dataMark Blaxter
Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Ashworth Laboratories, King s Buildings, Edinburgh EH9 3JT, UK
Philos Trans R Soc Lond B Biol Sci 360:1935-43. 2005..Major issues remain, in particular the methodologies for taxon discrimination in DNA barcode data...
- Terminology and labeling of cellular products: 1. StandardsP Ashford
International Cellular Therapy Coding and Labelling Advisory Group, Redlands, CA 92374, USA
Bone Marrow Transplant 40:1075-83. 2007..A companion paper provides guidance on the implementation of the ISBT 128 system...
- Terminology and labeling of cellular products-2: Implementation planP Ashford
International Cellular Therapy Coding and Labelling Advisory Group, Redlands, CA 92374, USA
Bone Marrow Transplant 40:1085-90. 2007..This paper provides guidance on the practical aspects of adopting these new standards for organizations with differing current levels of computerization. It discusses project management, equipment, licensing, and validation topics...
- Design of a national retail data monitor for public health surveillanceMichael M Wagner
The RODS Laboratory, Center for Biomedical Informatics, University of Pittsburgh, Suite 550, 100 Technology Drive, Pittsburgh, PA 15219, USA
J Am Med Inform Assoc 10:409-18. 2003....
- BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data BankJurgen F Doreleijers
BioMagResBank, Department of Biochemistry, University of Wisconsin Madison, 433 Babcock Drive, Madison, WI 53706, U S A
J Biomol NMR 26:139-46. 2003..The results serve as a model for the development of standards for NMR constraint deposition in computer-readable form. The constraints are updated regularly and are available from the BMRB web site (http://www.bmrb.wisc.edu)...
- A comparison of error detection rates between the reading aloud method and the double data entry methodMiyuki Kawado
Department of Hygiene, Fujita Health University School of Medicine, Toyoake City, Aichi, Japan
Control Clin Trials 24:560-9. 2003..The total expended times were 74.8 hours for the DDE method and 57.9 hours for the RA method. These results suggest that in detecting errors of single data entry, the RA method is inferior to the DDE method, while its time cost is lower...
- A public-domain image processing tool for automated quantification of fluorescence in situ hybridisation signalsJ Konsti
Biomedical Informatics Research Group, Department of Oncology, University of Helsinki, Helsinki, Finland
J Clin Pathol 61:278-82. 2008..To develop and evaluate an automated method for quantification of HER2 fluorescence in situ hybridisation (FISH) signals...
- Electronic data collection options for practice-based research networksWilson D Pace
Department of Family Medicine, University of Colorado Health Sciences Center, Denver, Colorado, USA
Ann Fam Med 3:S21-9. 2005..We wanted to describe the potential benefits and problems associated with selected electronic methods of collecting data within practice-based research networks (PBRNs)...
- Microcoding: the second step in DNA barcodingR C Summerbell
CBS Fungal Biodiversity Centre, Utrecht, The Netherlands
Philos Trans R Soc Lond B Biol Sci 360:1897-903. 2005..Arrays and functionally similar platforms may have a particular advantage when a biologically complex material such as soil or a human respiratory secretion sample is analysed to give a census of relevant species present...
- Doublet method for very fast autocodingJules J Berman
Cancer Diagnosis Program, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA
BMC Med Inform Decis Mak 4:16. 2004..The purpose of this paper is to describe the doublet method, a new algorithm for very fast autocoding...
- Text-independent writer identification and verification using textural and allographic featuresMarius Bulacu
AI Institute, University of Groningen, Groningen, The Netherlands
IEEE Trans Pattern Anal Mach Intell 29:701-17. 2007....
- Image restoration of arbitrarily warped documentsMichael S Brown
Department of Computer Science, Hong Kong University of Science and Technology, Clearwater Bay, Kowloon, Hong Kong, China
IEEE Trans Pattern Anal Mach Intell 26:1295-306. 2004..Our framework is designed for use in library and museum digitization efforts where very old and badly damaged manuscripts are imaged...
- Symbol recognition with kernel density matchingWan Zhang
Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong
IEEE Trans Pattern Anal Mach Intell 28:2020-4. 2006..Symbol orientation is found by gradient-based angle searching or independent component analysis. Experimental results show the outstanding performance of this approach in various situations...
- Character independent font recognition on a single Chinese characterXiaoqing Ding
Electronics Engineering Department, Tsinghua University, Beijing, P R China
IEEE Trans Pattern Anal Mach Intell 29:195-204. 2007..Additionally, our method demonstrates that it is possible to extract subtle yet discriminative signals embedded in a much larger noisy background...
- Utilization of hierarchical, stochastic relationship modeling for Hangul character recognitionKyung Won Kang
Department of Computer Science, KAIST, Yusong gu, Daejon, South Korea
IEEE Trans Pattern Anal Mach Intell 26:1185-96. 2004..Recognition experiments conducted on a public database show the effectiveness of the proposed relationship modeling. The recognition accuracy increased by 5.5 percent in comparison to the most successful system ever reported...
- Texture for script identificationAndrew Busch
School of Microelectronic Engineering, Griffith University Nathan Campus, QLD, Australia
IEEE Trans Pattern Anal Mach Intell 27:1720-32. 2005..Strategies for improving classification results in situations with limited training data and multiple font types are also proposed...
- Recognition and verification of unconstrained handwritten wordsAlessandro L Koerich
Applied Informatics, Pontifical Catholic University of Parana, R Imaculada Conceição, 1155, Curitiba, PR, 80215 901, Brazil
IEEE Trans Pattern Anal Mach Intell 27:1509-22. 2005..Our approach is described in detail and the experimental results on a large database of unconstrained handwritten words extracted from postal envelopes are presented...
- Recognition of merged characters based on forepart prediction, necessity-sufficiency matching, and character-adaptive maskingJiqiang Song
Department of Computer Science and Engineering, The Chinese University of Hong Kong, Shatin, Hong Kong
IEEE Trans Syst Man Cybern B Cybern 35:2-11. 2005..The experimental results and the performance comparisons with other methods demonstrate the effectiveness of the proposed method...
- Fast SVM training algorithm with decomposition on very large data setsJian xiong Dong
Centre for Pattern Recognition and Machine Intelligence, the Department of Computer Science and Software Engineering, Concordia University, 1455 De Maisonneuve Blvd West, Suite GM 606, Montreal, Quebec, Canada H3G 1M8
IEEE Trans Pattern Anal Mach Intell 27:603-18. 2005..Moreover, the good generalization performances on several large databases have also been achieved...
- Estimating the pen trajectories of static signatures using hidden Markov modelsEmli Mari Nel
Department of Electrical and Electronic Engineering, University of Stellenbosch, Matieland, South Africa
IEEE Trans Pattern Anal Mach Intell 27:1733-46. 2005..We then derive a hidden Markov model from the static image and match it to the dynamic version of the image. This match results in the estimated pen trajectory of the static image...
- Minimum classification error training for online handwriting recognitionAlain Biem
IBM T J Watson Research Center, PO Box 218, Yorktown Heights, NY 10598, USA
IEEE Trans Pattern Anal Mach Intell 28:1041-51. 2006..Word recognition results, on vocabularies of 5k to 10k, show that MCE training achieves around 17 percent word error rate reduction when compared to the baseline Maximum Likelihood system...
- A scale space approach for automatically segmenting words from historical handwritten documentsR Manmatha
Center for Intelligent Information Retrieval, Department of Computer Science, University of Massachusetts, Amherst, 140 Governors Dr, Amherst, MA 01003, USA
IEEE Trans Pattern Anal Mach Intell 27:1212-25. 2005..The technique outperforms a state-of-the-art gap metrics word-segmentation algorithm on this collection...
- Font adaptive word indexing of modern printed documentsSimone Marinai
Dipartimento di Sistenmi e Informatica, Universita di Firenze, via di S Marta, 3, 50139 Firenze, Italy
IEEE Trans Pattern Anal Mach Intell 28:1187-99. 2006..Our experimental analysis addresses six data sets containing documents ranging from books of the 17th century to contemporary journals...
- Offline geometric parameters for automatic signature verification using fixed-point arithmeticMiguel A Ferrer
Departamento de Señales y Comunicaciones, Universidad de Las Palmas de Gran Canaria, Campus de Tafira, E35017 Las Palmas de Gran Canaria, Spain
IEEE Trans Pattern Anal Mach Intell 27:993-7. 2005..The experiments have shown promising results in the task of discriminating random and simple forgeries...
- Hidden Markov models combining discrete symbols and continuous attributes in handwriting recognitionHanhong Xue
Advance Clustering Technology Team, IBM, Poughkeepsie, NY 12601, USA
IEEE Trans Pattern Anal Mach Intell 28:458-62. 2006..The models are rigorously defined and experiments have proven their effectiveness...
- METIS: multiple extraction techniques for informative sentencesA L Mitchell
Faculty of Life Sciences and School of Computer Science, University of Manchester, UK
Bioinformatics 21:4196-7. 2005..These reports may then be augmented with pertinent sentences extracted from online biomedical literature via support vector machine and rule-based sentence classification systems...
- Table detection in online ink notesZhouchen Lin
Microsoft Research Asia, 5th Floor, Sigma Building Zhichun Road 49, Haidian District, Beijing 100080, PR China
IEEE Trans Pattern Anal Mach Intell 28:1341-6. 2006..Experimental results suggest that our system is robust and accurate in dealing with tables having complex structure or drawn under complex situations...
- Restoring warped document images through 3D shape modelingChew Lim Tan
School of Computing, National University of Singapore 3, Science Drive 2, Singapore
IEEE Trans Pattern Anal Mach Intell 28:195-208. 2006..The results show that the geometric and photometric distortions are mostly removed and the OCR results are improved markedly...
- A parallel-line detection algorithm based on HMM decodingYefeng Zheng
Language and Media Processing Laboratory, Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742 3275, USA
IEEE Trans Pattern Anal Mach Intell 27:777-92. 2005..The experiments conducted on known form processing and rule line detection show our method is robust, and achieves better results than other widely used line detection methods...
- An integration of online and pseudo-online information for cursive word recognitionTal Steinherz
Department of Computer Science, Tel Aviv University, Ramat Aviv 69978, Israel
IEEE Trans Pattern Anal Mach Intell 27:669-83. 2005..Results demonstrate that the pseudo-online representation is useful as the combination of classifiers perform better than those based solely on pure online information...
- Metric learning for text documentsGuy Lebanon
Department of Statistics, Purdue University, 150 N University Street, West Lafayette, IN 47907, USA
IEEE Trans Pattern Anal Mach Intell 28:497-508. 2006..When applied to text document classification the resulting geodesic distance resemble, but outperform, the tfidf cosine similarity measure...
- A novel document ranking method using the discrete cosine transformLaurence A F Park
ARC Centre for Perceptive and Intelligent Machines in Complex Environments, Department of Computer Science and Software Engineering, University of Melbourne, Parkville, Victoria, Australia
IEEE Trans Pattern Anal Mach Intell 27:130-5. 2005..By taking advantage of the properties of the DCT and by employing the fast query and compression techniques found in vector space methods (VSM), we show that we can process queries as fast as VSM and achieve a much higher precision...
- Style consistent classification of isogenous patternsPrateek Sarkar
Palo Alto Research Center, 3333 Coyote Hill Road, Palo Alto, CA 94304, USA
IEEE Trans Pattern Anal Mach Intell 27:88-98. 2005..Longer fields favor our classification method because they furnish more information about the underlying style...
- An environment for complex behaviour detection in bio-potential experimentsMaide Bucolo
Dipartimento di Ingegneria Elettrica, Elettronica e dei Sistemi, Universita degli Studi di Catania, Viale A Doria 6, 95125 Catania, Italy
Math Biosci Eng 5:261-76. 2008..The environment provides a user-friendly Graphic User Interface that allows inexperienced users to perform complex analyses and to speed up experimental data processing...
- Script and language identification in noisy and degraded document imagesLu Shijian
Department of Computer Science, National University of Singapore, Singapore
IEEE Trans Pattern Anal Mach Intell 30:14-24. 2008..Experimental results show that the proposed technique is accurate, easy for extension, and tolerant to noise and various types of document degradation...
- Globally consistent reconstruction of ripped-up documentsLiangjia Zhu
Department of Automatic Control, College of Mechatronics and Automation, National University of Defense Technology, People s Republic of China
IEEE Trans Pattern Anal Mach Intell 30:1-13. 2008..The overall performance of our approach in several practical experiments is illustrated. The results indicate that the reconstruction of ripped-up documents up to fifty pieces is possibly accomplished automatically...
- Autofocusing for automated microscopic evaluation of blood smear and pap smearX Y Liu
Adv Micro and Nanosyst Lab, Toronto Univ, Ontario, Canada
Conf Proc IEEE Eng Med Biol Soc 1:4718-21. 2006..Together with our previously reported findings, we hypothesize that the variance algorithm or the Normalized variance algorithm is the optimal focus algorithm for all non- fluorescence microscopy applications...
- On using the Viterbi path along with HMM likelihood information for online signature verificationLy Van Bao
Umanis, 92301 Levallois Perret, France
IEEE Trans Syst Man Cybern B Cybern 37:1237-47. 2007....
- Stress and CRF System Effects on Information ProcessingVictoria B Risbrough; Fiscal Year: 2010..These studies will increase our understanding of risk factors and potential prophylactic treatments for PTSD. ..
- REHABILITATION OF COGNITIVE SYMPTOMS IN MSJohn DeLuca; Fiscal Year: 2002..If our hypotheses are supported, then our data will lay the foundation for intervention strategies geared toward increasing information processing efficiency to improve memory performance in everyday life. ..
- Task-based ideal observer analysis and the efficiency of biological motion percepJason M Gold; Fiscal Year: 2010....
- Task-based ideal observer analysis and the efficiency of biological motion percepJason Gold; Fiscal Year: 2009....
- Task-based ideal observer analysis and the efficiency of biological motion percepJason Gold; Fiscal Year: 2009....
- Modulation of subcortical visual information processingCHARLES LEROY COX; Fiscal Year: 2010....
- CONTINUITY OF LIMBIC CIRCUIT THROUGH THE BASAL GANGLIASuzanne Haber; Fiscal Year: 2009..This developmental period is also the time when there is a great deal of anatomical refinement of circuits. ..
- CONTINUITY OF LIMBIC CIRCUIT THROUGH THE BASAL GANGLIASuzanne N Haber; Fiscal Year: 2010..This developmental period is also the time when there is a great deal of anatomical refinement of circuits. ..
- STARTLE GATING AND LOCOMOTION IN D2-FAMILY KNOCKOUT MICEMark Geyer; Fiscal Year: 2004..This information will have important implications for the further development of therapeutic approaches to the treatment of both schizophrenia and drug abuse. ..
- dbVision: A Toolbox for bioimage databasesKaushal Solanki; Fiscal Year: 2007..This STTR Phase II proposal targets this critical need in continuing to develop a simple and flexible image database system that would help the scientists analyze and mine large data collections. ..
- NEURONAL INTEGRATION IN CEREBELLAR SYSTEMSVlastislav Bracha; Fiscal Year: 2004....
- CELLULAR MECHANISMS OF AUDITORY INFORMATION PROCESSINGPAUL MANIS; Fiscal Year: 2009..These experiments will ultimately generate insights for alternative stimulation strategies for the hard-of-hearing, and for cochlear implant users. ..
- CELLULAR MECHANISMS OF AUDITORY INFORMATION PROCESSINGPaul B Manis; Fiscal Year: 2010..These experiments will ultimately generate insights for alternative stimulation strategies for the hard-of-hearing, and for cochlear implant users. ..
- Cognitive Derminants of Mild Mental RetardationDasen Luo; Fiscal Year: 2005..The proposed project is also intended as a pilot study for a larger cross-cultural study that we plan to conduct in the near future to address similar issues from a developmental perspective. ..
- Impulsivity and Information Processing in Adolescent Cannabis AbuseDonald Dougherty; Fiscal Year: 2007....
- Neurodevelopmental Processes of Social Cognition in Anorexia Nervosa and AutismNancy Zucker; Fiscal Year: 2007....
- Social Outcomes in Pediatric Traumatic Brain InjuryKeith O Yeates; Fiscal Year: 2010....
- Social Outcomes in Pediatric Traumatic Brain InjuryKeith Yeates; Fiscal Year: 2009....
- Aging and Metacognition in Strategic Skill AcquisitionChristopher Hertzog; Fiscal Year: 2007....
- Social Outcomes in Pediatric Traumatic Brain InjuryKeith Yeates; Fiscal Year: 2007..By helping to better understand social outcomes after childhood TBI, the study's findings may suggest ways to promote children's behavioral adaptation to the functional losses and disabilities that frequently occur after TBI. ..
- Social Outcomes in Pediatric Traumatic Brain InjuryKeith O Yeates; Fiscal Year: 2010..By helping to better understand social outcomes after childhood TBI, the study's findings may suggest ways to promote children's behavioral adaptation to the functional losses and disabilities that frequently occur after TBI. ..
- Auditory Information Processing in the Midbrain: Modulation by the AmygdalaJeffrey Wenstrup; Fiscal Year: 2009..They may further our understanding of the role of the amygdala in auditory learning. This work may also improve our understanding of the role of emotional centers in abnormal auditory perceptions such as tinnitus. ..
- Auditory Information Processing in the Midbrain: Modulation by the AmygdalaJEFFREY JAMES WENSTRUP; Fiscal Year: 2010..They may further our understanding of the role of the amygdala in auditory learning. This work may also improve our understanding of the role of emotional centers in abnormal auditory perceptions such as tinnitus. ..
- Auditory Information Processing in the Midbrain: Modulation by the AmygdalaJeffrey Wenstrup; Fiscal Year: 2007..They may further our understanding of the role of the amygdala in auditory learning. This work may also improve our understanding of the role of emotional centers in abnormal auditory perceptions such as tinnitus. ..
- INFORMATION PROCESSING IN THE NUCLEUS ACCUMBENSPATRICIO O DONNELL; Fiscal Year: 2009..abstract_text> ..