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Genomes and Genes
| zebrafish proteinsSummarySummary: Proteins obtained from the ZEBRAFISH. Many of the proteins in this species have been the subject of studies involving basic embryological development (EMBRYOLOGY). Top Publications
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Publications
Neurogenin1 defines zebrafish cranial sensory ganglia precursorsPeter Andermann
Department of Biological Structure, University of Washington, Seattle 98195 7420, USA
Dev Biol 251:45-58. 2002..Lateral line sensory neuromasts develop independently of ngn1 function, suggesting that two derivatives of lateral line placodes, ganglia and migrating primordia, are under separate genetic control...
Zebrafish Bmp4 regulates left-right asymmetry at two distinct developmental time pointsSonja Chocron
Cardiac Development and Genetics Group, Hubrecht Laboratory, Uppsalalaan 8, Utrecht, The Netherlands
Dev Biol 305:577-88. 2007..The identification of these two distinct and opposing activities of BMP signaling provides new insight into how BMP signaling can regulate LR patterning...
Morpholino phenocopies of the swirl, snailhouse, somitabun, minifin, silberblick, and pipetail mutationsZ Lele
Hans-Spemann Laboratory, , Freiburg, Germany
Genesis 30:190-4. 2001
DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafishYasuaki Takeda
Department of Biology, Graduate School of Science, Kobe University, Kobe, Japan
PLoS ONE 4:e7513. 2009..The nanos1 and tdrd7 3'UTRs include cis-acting elements that allow activity in PGCs even in the presence of miRNA-mediated repression...
Optimized Gal4 genetics for permanent gene expression mapping in zebrafishMartin Distel
Helmholtz Zentrum Munchen, Institute of Developmental Genetics, Ingolstadter Landstrasse 1, 85764 Neuherberg, Germany
Proc Natl Acad Sci U S A 106:13365-70. 2009..These data demonstrate prolonged and maintained expression by Kalooping, a technique that can be used for permanent spatiotemporal genetic fate mapping and targeted transgene expression in zebrafish...
Development of the zebrafish lymphatic system requires VEGFC signalingAxel M Küchler
Exelixis, Inc, 170 Harbor Way, South San Francisco, California 94083, USA
Curr Biol 16:1244-8. 2006....
Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesisYong Zhao
Department of Pediatrics Cardiology, University of Texas Southwestern Medical Center and Children s Medical Center Dallas, 6000 Harry Hines Boulevard, Dallas, Texas 75390 9148, USA
Nature 436:214-20. 2005..This work suggests that miR-1 genes titrate the effects of critical cardiac regulatory proteins to control the balance between differentiation and proliferation during cardiogenesis...
SmyD1, a histone methyltransferase, is required for myofibril organization and muscle contraction in zebrafish embryosXungang Tan
Center of Marine Biotechnology, University of Maryland Biotechnology Institute, Baltimore, MD 21202, USA
Proc Natl Acad Sci U S A 103:2713-8. 2006..Together, these data indicate that SmyD1a and SmyD1b are histone methyltransferases and play a critical role in myofibril organization during myofiber maturation...
Fgf4 is required for left-right patterning of visceral organs in zebrafishHajime Yamauchi
Department of Genetic Biochemistry, Kyoto University Graduate School of Pharmaceutical Sciences, Sakyo, Kyoto 606 8501, Japan
Dev Biol 332:177-85. 2009..The present findings indicate that Fgf4 plays a unique role in the LR patterning of visceral organs in zebrafish...
Caught up in a Wnt storm: Wnt signaling in cancerRachel H Giles
Hubrecht Laboratory, Netherlands Institute for Developmental Biology, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
Biochim Biophys Acta 1653:1-24. 2003....
Role of delta-like-4/Notch in the formation and wiring of the lymphatic network in zebrafishIlse Geudens
Vesalius Research Center, VIB, Leuven, Belgium
Arterioscler Thromb Vasc Biol 30:1695-702. 2010..To study whether Notch signaling, which regulates cell fate decisions and vessel morphogenesis, controls lymphatic development...
Zebrafish orthopedia (otp) is required for isotocin cell developmentJennifer L Eaton
Division of Endocrinology and Metabolism, Department of Medicine, Georgetown University Medical Center, 232 Building D, 4000 Reservoir Rd, NW Washington, DC 20057, USA
Dev Genes Evol 217:149-58. 2007..Overall, these studies support the hypothesis that the role of otp in zebrafish neuroendocrine cell development is evolutionarily conserved with that of mammals...
Retinal homeobox 1 is required for retinal neurogenesis and photoreceptor differentiation in embryonic zebrafishSteve M Nelson
Department of Biological Sciences, Moscow, Idaho 83844 3051, USA
Dev Biol 328:24-39. 2009....
Different Smad2 partners bind a common hydrophobic pocket in Smad2 via a defined proline-rich motifRebecca A Randall
Laboratory of Developmental Signalling and Biomolecular Modelling Laboratory, Imperial Cancer Research Fund, 44 Lincoln s Inn Fields, London WC2A 3PX, UK
EMBO J 21:145-56. 2002..Thus, different Smad2 partners, whether cytoplasmic or nuclear, interact with the same binding pocket in Smad2 through a common proline-rich motif...
Fgf10 regulates hepatopancreatic ductal system patterning and differentiationP Duc Si Dong
Department of Biochemistry and Biophysics, Programs in Developmental Biology, Genetics and Human Genetics, and the Diabetes Center, University of California, San Francisco, 1550 Fourth Street, San Francisco, California 94158, USA
Nat Genet 39:397-402. 2007..These data shed light onto how the multipotent cells of the foregut endoderm, and subsequently those of the hepatopancreatic duct, are directed toward different organ fates...
Identification of new netrin family members in zebrafish: developmental expression of netrin 2 and netrin 4Kye Won Park
Department of Oncological Sciences, University of Utah, Salt Lake City, Utah
Dev Dyn 234:726-31. 2005..In contrast, netrin 4 is detected only at very low levels during early development. The nonoverlapping expression patterns of these four Netrins suggest that they may play unique roles in zebrafish development...
Temporal Notch activation through Notch1a and Notch3 is required for maintaining zebrafish rhombomere boundariesXuehui Qiu
Laboratory of Developmental Signalling and Patterning, Genes and Development Division, Institute of Molecular and Cell Biology, A STAR Agency for Science, Technology and Research, Singapore, Singapore
Dev Genes Evol 219:339-51. 2009....
Redundant activities of Tfap2a and Tfap2c are required for neural crest induction and development of other non-neural ectoderm derivatives in zebrafish embryosWei Li
Interdisciplinary Graduate Program in Genetics, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA
Dev Biol 304:338-54. 2007....
Deletion of the WD40 domain of LRRK2 in Zebrafish causes Parkinsonism-like loss of neurons and locomotive defectDonglai Sheng
Department of Human Genetics, Genome Institute of Singapore, A STAR, Singapore, Singapore
PLoS Genet 6:e1000914. 2010..Taken together, our results demonstrate that zLRRK2 is an ortholog of hLRRK2 and that the deletion of WD40 domain of zLRRK2 provides a disease model for PD...
Control of chemokine-guided cell migration by ligand sequestrationBijan Boldajipour
Center for Molecular Biology of Inflammation, Von Esmarch Strasse 56, D 48149 Munster, Germany
Cell 132:463-73. 2008....
Zebrafish cdx1b regulates expression of downstream factors of Nodal signaling during early endoderm formationPei Yi Cheng
Institute of Bioscience and Biotechnology, National Taiwan Ocean University, Keelung, Taiwan
Development 135:941-52. 2008..This study underscores a novel role of zebrafish cdx1b in the development of different digestive organs compared with its mammalian homologs...
Identification and functional analysis of the vision-specific BBS3 (ARL6) long isoformPamela R Pretorius
Department of Biology, University of Iowa, Iowa City, Iowa, United States of America
PLoS Genet 6:e1000884. 2010..Bbs3L-null mice lack key features of previously published Bbs-null mice, including obesity. These data demonstrate that the BBS3L transcript is required for proper retinal function and organization...
Live imaging of lymphatic development in the zebrafishKarina Yaniv
Laboratory of Molecular Genetics, National Institute of Child Health and Human Development, National Institutes of Health, 6B 309, 6 Center Drive, Bethesda, Maryland 20892, USA
Nat Med 12:711-6. 2006..Our results show lymphatic endothelial cells of the thoracic duct arise from primitive veins through a novel and unexpected pathway...
Cooperative roles of Bozozok/Dharma and Nodal-related proteins in the formation of the dorsal organizer in zebrafishT Shimizu
Division of Molecular Oncology C7, Biomedical Research Center, Osaka University Graduate School of Medicine, 2 2 Yamada oka, Suita, Osaka, Japan
Mech Dev 91:293-303. 2000....
Zebrafish KLF4 is essential for anterior mesendoderm/pre-polster differentiation and hatchingMelissa R Gardiner
Queensland Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia
Dev Dyn 234:992-6. 2005..These results indicate zKLF4 is expressed within the pre-polster, an early mesendodermal site, and that it plays a critical role in the differentiation of these cells into hatching gland cells...
Huntingtin-deficient zebrafish exhibit defects in iron utilization and developmentAmanda L Lumsden
ARC Special Research Centre for the Molecular Genetics of Development and Discipline of Genetics, School of Molecular and Biomedical Science, The University of Adelaide, Adelaide, SA, Australia
Hum Mol Genet 16:1905-20. 2007..It is therefore plausible that perturbation of Htt's normal role in the iron pathway (by polyglutamine tract expansion) contributes to HD pathology, and particularly to its neuronal specificity...
Setting the tempo in development: an investigation of the zebrafish somite clock mechanismFrancois Giudicelli
Vertebrate Development Laboratory, Cancer Research UK London Research Institute, London, United Kingdom
PLoS Biol 5:e150. 2007....
Decreased BDNF levels are a major contributor to the embryonic phenotype of huntingtin knockdown zebrafishHeike Diekmann
Summit Cambridge Ltd, Cambridge CB25 9TN, United Kingdom
J Neurosci 29:1343-9. 2009..Increasing BDNF expression may represent a useful strategy for Huntington's disease treatment...
p53-dependent neuronal cell death in a DJ-1-deficient zebrafish model of Parkinson's diseaseSandrine Bretaud
Centre for Developmental and Biomedical Genetics, University of Sheffield, Sheffield, UK
J Neurochem 100:1626-35. 2007..Our study demonstrates the utility of zebrafish as a new animal model to study PD gene defects and suggests that modulation of downstream mechanisms, such as p53 inhibition, may be of therapeutic benefit...
Zebrafish pou5f1/pou2, homolog of mammalian Oct4, functions in the endoderm specification cascadeKaren Lunde
Developmental Biology, Institute Biology 1, University of Freiburg, Hauptstrasse 1, D 79104, Freiburg, Germany
Curr Biol 14:48-55. 2004..We propose that pou5f1 plays an activating role in zebrafish endodermal development, where it maintains sox32 expression during gastrulation and acts with sox32 to induce sox17 expression in endodermal precursor cells...
Actomyosin is the main driver of interkinetic nuclear migration in the retinaCaren Norden
Department of Physiology, Development and Neuroscience, Cambridge University, Cambridge, UK
Cell 138:1195-208. 2009..We also show that IKNM is driven largely by actomyosin-dependent forces as it still occurs when the microtubule cytoskeleton is compromised but is blocked when MyosinII activity is inhibited...
Cranio-lenticulo-sutural dysplasia is caused by a SEC23A mutation leading to abnormal endoplasmic-reticulum-to-Golgi traffickingSimeon A Boyadjiev
McKusick Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA
Nat Genet 38:1192-7. 2006..Our observations suggest that disrupted endoplasmic reticulum export of the secretory proteins required for normal morphogenesis accounts for CLSD...
Cilia localization is essential for in vivo functions of the Joubert syndrome protein Arl13b/ScorpionNeil A Duldulao
Department of Genetics, Yale University School of Medicine, 333 Cedar Street, NSB 393, New Haven, CT 06520, USA
Development 136:4033-42. 2009..Together, these results strongly support the hypothesis that JS-related disease (JSRD) is a ciliopathy, or a disease caused by ciliary defects, and that Arl13b functions mainly through the cilium...
The midbrain-hindbrain phenotype of Wnt-1-/Wnt-1- mice results from stepwise deletion of engrailed-expressing cells by 9.5 days postcoitumA P McMahon
Department of Cell and Developmental Biology, Roche Institute of Molecular Biology, Roche Research Center, Nutley, New Jersey 07110
Cell 69:581-95. 1992..We suggest that functional redundancy between these two genes accounts for the lack of a caudal central nervous system phenotype...
Molecular characterization of retinal stem cells and their niches in adult zebrafishPamela A Raymond
Department of Molecular, Cellular and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA
BMC Dev Biol 6:36. 2006....
Gateway compatible vectors for analysis of gene function in the zebrafishJacques A Villefranc
Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA
Dev Dyn 236:3077-87. 2007..Taken together, this work provides an important platform for the rapid functional analyses of open reading frames in zebrafish embryos...
Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cellsC Yoon
Department of Biology and Center for Cancer Research, Massachusetts Institute of Technology, Cambridge 02139, USA
Development 124:3157-65. 1997..Furthermore, they provide the basis for further studies on this novel RNA localization pattern and on germ-line development in general...
Elevated expression of axin2 and hnkd mRNA provides evidence that Wnt/beta -catenin signaling is activated in human colon tumorsD Yan
Chiron Corporation, 4560 Horton Street, Q 407B, Emeryville, CA 94608, USA
Proc Natl Acad Sci U S A 98:14973-8. 2001..These results reveal that it is possible to detect activation of a carcinogenic pathway in human cancer samples with specific markers...
Myosin heavy chain expression in cranial, pectoral fin, and tail muscle regions of zebrafish embryosMou Yun Peng
Institute of Zoology, Academia Sinica, Nankang, Taipei, Taiwan, ROC
Mol Reprod Dev 63:422-9. 2002....
Intestinal polyposis in mice with a dominant stable mutation of the beta-catenin geneN Harada
Banyu Tsukuba Research Institute Merck, Tsukuba 300 2611, Japan
EMBO J 18:5931-42. 1999..Some nascent microadenomas were also found in the colon. These results present experimental genetic evidence that activation of the Wnt signaling pathway can cause intestinal and colonic tumors...
GFAP transgenic zebrafishRebecca L Bernardos
Neuroscience Graduate Program, 4402 Kresge III, University of Michigan, Ann Arbor, MI 48109 0520, USA
Gene Expr Patterns 6:1007-13. 2006..GFP expression in glia co-localized with anti-GFAP antibodies, but did not co-localize with the neuronal antibodies HuC/D or calretinin in mature neurons...
Suppression of Alk8-mediated Bmp signaling cell-autonomously induces pancreatic beta-cells in zebrafishWon Suk Chung
Department of Biochemistry and Biophysics, Programs in Developmental Biology, Genetics and Human Genetics, The Liver Center, Institute for Regeneration Medicine and Diabetes Center, University of California, San Francisco, CA 94158, USA
Proc Natl Acad Sci U S A 107:1142-7. 2010..These results provide important unique insight into the intercellular signaling environment necessary for in vivo and in vitro generation of beta-cells...
Essential and opposing roles of zebrafish beta-catenins in the formation of dorsal axial structures and neurectodermGianfranco Bellipanni
Department of Biology, University of Pennsylvania, Philadelphia, 19104, USA
Development 133:1299-309. 2006..We propose that the early, dorsal-promoting function of beta-catenin-2 is essential to counteract a later, dorsal- and neurectoderm-repressing function that is shared by both beta-catenin genes...
Semaphorin-plexin signaling guides patterning of the developing vasculatureJesus Torres-Vazquez
Laboratory of Molecular Genetics, NICHD, National Institutes of Health, Bethesda, MD 20892, USA
Dev Cell 7:117-23. 2004..These results reveal the fundamental conservation of repulsive patterning mechanisms between axonal migration in the central nervous system and vascular endothelium during angiogenesis...
Identification of the zebrafish ventral habenula as a homolog of the mammalian lateral habenulaRyunosuke Amo
Laboratory for Developmental Gene Regulation, RIKEN Brain Science Institute, Wako, Saitama 351 0198, Japan
J Neurosci 30:1566-74. 2010..These findings indicated that the lateral habenular pathways are evolutionarily conserved pathways and might control adaptive behaviors in vertebrates through the regulation of monoaminergic activities...
Eomesodermin is a localized maternal determinant required for endoderm induction in zebrafishChristopher R R Bjornson
Department of Biochemistry, University of Washington, Seattle, Washington 98195 7350, USA
Dev Cell 9:523-33. 2005..Direct physical interactions between Eomes, Bon, and Gata5 suggest that Eomes promotes endoderm induction in marginal blastomeres by facilitating the assembly of a transcriptional activating complex on the cas promoter...
Cloning of full-length zebrafish dcc and expression analysis during embryonic and early larval developmentCornelia Fricke
Department of Neurobiology and Anatomy, University of Utah Medical Center, Salt Lake City, Utah 84132 3401, USA
Dev Dyn 234:732-9. 2005..Thus, dcc may play roles not only in axon guidance, but in morphogenesis and functioning of these organs as well...
Perp is required for tissue-specific cell survival during zebrafish developmentM Nowak
Max Planck Institute for Immunobiology, Stuebeweg 51, 79108 Freiburg, Germany
Cell Death Differ 12:52-64. 2005..We conclude that, in contrast to its proapoptotic function in stressed cells, Perp plays an antiapoptotic role during normal zebrafish development to regulate tissue-specific cell survival...
B1 SOX coordinate cell specification with patterning and morphogenesis in the early zebrafish embryoYuichi Okuda
Graduate School of Frontier Biosciences, Osaka University, Suita, Japan
PLoS Genet 6:e1000936. 2010....
Inhibition of neurogenesis at the zebrafish midbrain-hindbrain boundary by the combined and dose-dependent activity of a new hairy/E(spl) gene pairJovica Ninkovic
Zebrafish Neurogenetics Junior Research Group, Institute of Virology, Technical University Munich, Trogerstrasse 4b, D 81675 Munich, Germany
Development 132:75-88. 2005..We propose a molecular mechanism for this process where the global 'Him+Her5' activity inhibits ngn1 expression in a dose-dependent manner and through different sensitivity thresholds along the medio-lateral axis of the neural plate...
Wnt/beta-catenin signalingT Akiyama
Laboratory of Molecular and Genetic Information, Institute for Molecular and Cellular Biosciences, The University of Tokyo, 1 1 1 Yayoi, Bunkyo ku, 113 0032, Tokyo, Japan
Cytokine Growth Factor Rev 11:273-82. 2000..Furthermore, mutations in APC or beta-catenin have been found to be responsible for the genesis of human cancers...
Pdlim7 (LMP4) regulation of Tbx5 specifies zebrafish heart atrio-ventricular boundary and valve formationTroy Camarata
Department of Pediatrics, Northwestern University, The Feinberg School of Medicine, Children s Memorial Research Center, 2300 Children s Plaza M C 204, Chicago, IL 60614, USA
Dev Biol 337:233-45. 2010..These studies demonstrate that controlling the correct balance of Tbx5 activity is crucial for the specification of the AV boundary and valve formation...
Cooperative interaction of Xvent-2 and GATA-2 in the activation of the ventral homeobox gene Xvent-1BHenner Friedle
Abteilung Biochemie, , Albert-Einstein Allee 11, Ulm 89081, Germany
J Biol Chem 277:23872-81. 2002..This inhibitor is likely a component of the dorsal Wnt signaling pathway because nuclear translocation of beta-catenin before midblastula transition results in a suppression of Xvent-1B transcription...
Runnin' with the Dvl: proteins that associate with Dsh/Dvl and their significance to Wnt signal transductionKeith A Wharton
Department of Pathology, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, Texas, 75390 9072, USA
Dev Biol 253:1-17. 2003..The biochemical and cell biological mechanisms by which Dsh/Dvl proteins accomplish these remarkable tasks remain obscure...
Spatiotemporal expression of smooth muscle markers in developing zebrafish gutSonja Georgijevic
Department of Biochemistry and Molecular Biology, and Smooth Muscle Research Group, University of Calgary, Calgary, Alberta, Canada
Dev Dyn 236:1623-32. 2007..We find that smooth muscle marker expression in the swim bladder follows the same sequence of marker expression as the gut, but markers have a temporal delay reflecting the later formation of swim bladder smooth muscle...
Hedgehog signalling is required for cloacal development in the zebrafish embryoCaroline A Parkin
MRC Centre for Developmental and Biomedical Genetics, University of Sheffield, Firth Court, Western Bank, Sheffield, U K
Int J Dev Biol 53:45-57. 2009..These studies establish the zebrafish as a model for ARMs, and for the elucidation of other pathways involved in hindgut developmental processes...
An evolutionarily conserved intronic region controls the spatiotemporal expression of the transcription factor Sox10James R Dutton
Centre for Regenerative Medicine, Department of Biology and Biochemistry, University of Bath, Bath, BA2 7AY, UK
BMC Dev Biol 8:105. 2008..As expected, the SOX10 expression pattern is complex and highly dynamic, but little is known of the underlying mechanisms regulating its spatiotemporal pattern. SOX10 expression is highly conserved between all vertebrates characterised...
Traveling wave formation in vertebrate segmentationKoichiro Uriu
Department of Biology, Faculty of Sciences, Kyushu University, Fukuoka 812 8581, Japan
J Theor Biol 257:385-96. 2009..Based on this result, we derive a mathematical formula for how the peak of gene expression moves along the pre-somitic mesoderm...
Bone morphogenetic protein heterodimers assemble heteromeric type I receptor complexes to pattern the dorsoventral axisShawn C Little
Department of Cell and Developmental Biology, University of Pennsylvania School of Medicine, 1211 BRBII III, 421 Curie Boulevard, Philadelphia, PA 19104 6058, USA
Nat Cell Biol 11:637-43. 2009....
Synaptojanin1 is required for temporal fidelity of synaptic transmission in hair cellsJosef G Trapani
Howard Hughes Medical Institute, Oregon Health and Science University, Portland, OR, USA
PLoS Genet 5:e1000480. 2009..Collectively, the data suggest that Synj1 is critical for retrieval of membrane in order to maintain the quantity, timing of fusion, and spontaneous release properties of SVs at hair-cell ribbon synapses...
Dhrs3a regulates retinoic acid biosynthesis through a feedback inhibition mechanismL Feng
Division of Basic Science and HHMI, Fred Hutchinson Cancer Research Center, B2 152, 1100 Fairview Ave N, Seattle, WA 98109, USA
Dev Biol 338:1-14. 2010..Dhrs3a is thus an RA-induced feedback inhibitor of RA biosynthesis. We conclude that retinaldehyde availability is an important level at which RA biosynthesis is regulated in vertebrate embryos...
Circadian control by the reduction/oxidation pathway: catalase represses light-dependent clock gene expression in the zebrafishJun Hirayama
Department of Pharmacology, School of Medicine, University of California, Irvine, CA 92697, USA
Proc Natl Acad Sci U S A 104:15747-52. 2007..Our findings provide an attractive link between the regulation of the cellular reduction/oxidation (redox) state and the photic signaling pathways implicated in circadian control...
Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafishYavor Hadzhiev
Institute of Toxicology and Genetics, Forschungszentrum Karlsruhe, Karlsruhe, Germany
BMC Dev Biol 7:75. 2007..However, the extent to which the molecular mechanisms patterning paired and median fins are shared remains unknown...
Retinoic acid is required for endodermal pouch morphogenesis and not for pharyngeal endoderm specificationDaniel Kopinke
University of Utah, Department of Neurobiology and Anatomy, Salt Lake City, Utah, USA
Dev Dyn 235:2695-709. 2006..These results demonstrate that the developmental processes underlying pharyngeal arch defects differ depending on when RA signaling is disturbed during development...
Functional genomic analysis of the Wnt-wingless signaling pathwayRamanuj DasGupta
Department of Genetics, Howard Hughes Medical Institute HHMI, Harvard Medical School, New Research Building, No 339, 77 Avenue Louis Pasteur, Boston, MA 02115, USA
Science 308:826-33. 2005..High-throughput RNAi screens in cultured cells, followed by functional analyses in model organisms, prove to be a rapid means of identifying regulators of signaling pathways implicated in development and disease...
RhoA acts downstream of Wnt5 and Wnt11 to regulate convergence and extension movements by involving effectors Rho kinase and Diaphanous: use of zebrafish as an in vivo model for GTPase signalingShizhen Zhu
Cell Signaling and Developmental Biology Laboratory, National University of Singapore, 14 Science Drive 4, Singapore 117543, The Republic of Singapore
Cell Signal 18:359-72. 2006..These findings also support the versatility of the zebrafish as a model to further investigate the roles of various classes of small GTPases in regulating cell dynamics in vivo...
Oscillators and the emergence of tissue organization during zebrafish somitogenesisAndrew Mara
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA
Trends Cell Biol 17:593-9. 2007..Here, we review recent progress in our understanding of the role of the Notch signaling pathway in the zebrafish segmentation oscillator and our appreciation of how the oscillator interfaces with different sources of noise...
Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formationBenjamin L Martin
Department of Biochemistry, University of Washington, Seattle, WA 98195 7350, USA
Dev Cell 15:121-33. 2008..We propose that a positive autoregulatory loop between Ntl/Bra and canonical Wnt signaling maintains the mesodermal progenitors to facilitate posterior somite development in chordates...
Maternal control of vertebrate dorsoventral axis formation and epiboly by the POU domain protein Spg/Pou2/Oct4Gerlinde Reim
Biotechnology Center and Center for Regenerative Therapies, University of Technology (TU) Dresden, Pfotenhauerstrasse 108, D-01307 Dresden, Germany
Development 133:2757-70. 2006..Based on the maternal requirement for pou2 in ventral specification, we propose that ventral specification employs an active, pou2-dependent maternal induction step, rather than a default ventralizing program...
tortuga refines Notch pathway gene expression in the zebrafish presomitic mesoderm at the post-transcriptional levelKariena K Dill
Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720 3200, USA
Dev Biol 287:225-36. 2005....
Wnt5 signaling in vertebrate pancreas developmentHyon J Kim
Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455, USA
BMC Biol 3:23. 2005..Signaling by the Wnt family of secreted glycoproteins through their receptors, the frizzled (Fz) family of seven-pass transmembrane proteins, is critical for numerous cell fate and tissue polarity decisions during development...
Zebrafish furin mutants reveal intricacies in regulating Endothelin1 signaling in craniofacial patterningMacie B Walker
Institute of Neuroscience, 1254 University of Oregon, Eugene, OR 97403, USA
Dev Biol 295:194-205. 2006....
Cooperative function of deltaC and her7 in anterior segment formationAndrew C Oates
Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, 01307 Dresden, Germany
Dev Biol 280:133-49. 2005..Thus, anterior segmentation requires the functions of both her and delta family members in a parallel manner, suggesting that the segmentation oscillator operates in paraxial mesoderm along the entire vertebrate axis...
Zebrafish nma is involved in TGFbeta family signalingM Tsang
Laboratory of Molecular Genetics, National Institute of Child Health and Human Development, Bethesda, Maryland 20892, USA
Genesis 28:47-57. 2000..We propose that nma is a BMP-regulated gene whose function is to attenuate BMP signaling during development through interactions with type II receptors and ligands...
Regulation of nodal signalling and mesendoderm formation by TARAM-A, a TGFbeta-related type I receptorTazu O Aoki
U368 INSERM, , 46 rue d'Ulm, 75230 Paris, France
Dev Biol 241:273-88. 2002..Together, our results point to Tar as an essential factor for endoderm formation and an important modulator of Nodal signalling, potentially representing one of the Nodal receptors. (c)2001 Elsevier Science...
SCL/Tal-1 transcription factor acts downstream of cloche to specify hematopoietic and vascular progenitors in zebrafishE C Liao
Division of Hematology Oncology, Children s Hospital, Department of Pediatrics and Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts 02115, USA
Genes Dev 12:621-6. 1998..Forced expression of SCL in clo embryos rescues the blood and vascular defects, suggesting that SCL acts downstream of clo to specify hematopoietic and vascular differentiation...
Stat3 Controls Cell Movements during Zebrafish GastrulationSusumu Yamashita
Department of Molecular Oncology C 7, Osaka University Graduate School of Medicine, 2 2 Yamada oka, 565 0871, Suita Osaka, Japan
Dev Cell 2:363-75. 2002..These results reveal a role for Stat3 in controlling cell movements during gastrulation...
A role for iro1 and iro7 in the establishment of an anteroposterior compartment of the ectoderm adjacent to the midbrain-hindbrain boundaryMotoyuki Itoh
Laboratory of Molecular Genetics, NICHD NIH, Bethesda, MD 20892, USA
Development 129:2317-27. 2002....
Zebrafish DeltaNp63 is a direct target of Bmp signaling and encodes a transcriptional repressor blocking neural specification in the ventral ectodermJeroen Bakkers
Max Planck Institute for Immunobiology, Stuebeweg 51, D 79108 Freiburg, Germany
Dev Cell 2:617-27. 2002..Together, DeltaNp63 fulfills the criteria to be the neural repressor postulated by the "neural default model."..
Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signaling pathway in the formation of anterior segmental boundaries in the zebrafishAndrew C Oates
Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA
Development 129:2929-46. 2002..Furthermore, our data suggest that redundancy between Her genes and genes of the Delta/Notch pathway is in part responsible for the robust formation of anterior somites in vertebrates...
Expression and splice variant analysis of the zebrafish tcf4 transcription factorRodrigo M Young
Millennium Nucleus in Developmental Biology, Departamento de Biologia, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile
Mech Dev 117:269-73. 2002..There is also transient expression in the anterior rhombomeres of the hindbrain and in the developing gut...
An expanded domain of fgf3 expression in the hindbrain of zebrafish valentino mutants results in mis-patterning of the otic vesicleSu Jin Kwak
Biology Department, Texas A and M University, College Station, TX 77843 3258, USA
Development 129:5279-87. 2002..This is in sharp contrast to the mouse, in which fgf3 is normally expressed in r5 and r6 because of positive regulation by kreisler, the mouse ortholog of val. Implications for co-evolution of the hindbrain and inner ear are discussed...
Isolation and characterization of runxa and runxb, zebrafish members of the runt family of transcriptional regulatorsCaroline Erter Burns
Children s Hospital Boston, Boston, MA, USA
Exp Hematol 30:1381-9. 2002..The aim of this study was to isolate runt-related genes in a genetically and embryologically exploitable system, the zebrafish, and characterize their function during hematopoietic development...
Ccd1, a novel protein with a DIX domain, is a positive regulator in the Wnt signaling during zebrafish neural patterningKensuke Shiomi
Department of Molecular Neurobiology, Institute of Basic Medical Sciences, University of Tsukuba, 1 1 1 Tennoudai, 305 8575, Tsukuba, Ibaraki, Japan
Curr Biol 13:73-7. 2003..These results indicate that Ccd1 is a novel positive regulator in this Wnt signaling pathway during zebrafish neural patterning...
Temporal and cellular requirements for Fms signaling during zebrafish adult pigment pattern developmentDavid M Parichy
Section of Integrative Biology, Section of Molecular, Cell and Developmental Biology, Institute for Cellular and Molecular Biology, University of Texas at Austin, 1 University Station C0930, Austin, TX 78712, USA
Development 130:817-33. 2003....
Genetic analysis of zebrafish gli1 and gli2 reveals divergent requirements for gli genes in vertebrate developmentRolf O Karlstrom
Department of Biology, University of Massachusetts, Amherst, MA 01003, USA
Development 130:1549-64. 2003..These results reveal divergent requirements for Gli1 and Gli2 in mouse and zebrafish and indicate that zebrafish Gli1 is an activator of Hh-regulated genes, while zebrafish Gli2 has minor roles as a repressor or activator of Hh targets...
A transgenic Lef1/beta-catenin-dependent reporter is expressed in spatially restricted domains throughout zebrafish developmentRichard I Dorsky
Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA
Dev Biol 241:229-37. 2002..We conclude that our TOP-dGFP reporter line faithfully illustrates domains of beta-catenin activity and enables the identification of responsive cell populations...
The planar cell-polarity gene stbm regulates cell behaviour and cell fate in vertebrate embryosMaiyon Park
Howard Hughes Medical Institute, Department of Pharmacology and Center for Developmental Biology, University of Washington School of Medicine, Seattle, Washington 98195, USA
Nat Cell Biol 4:20-5. 2002....
spiel ohne grenzen/pou2 is required during establishment of the zebrafish midbrain-hindbrain boundary organizerH G Belting
, , Hauptstrasse 1, D-79104 Freiburg, Germany
Development 128:4165-76. 2001..Thus, expression of pou2 does not depend on fgf8 and pax2.1. Our data suggest that pou2 is required for the establishment of the normal expression domains of wnt1 and pax2.1 in the MHB primordium...
Transient nuclear localization of Fyn kinase during development in zebrafishB J Rongish
Department of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, Kansas 66160, USA
Anat Rec 260:115-23. 2000..This is, to our knowledge, the first demonstration of Fyn kinase, which lacks a nuclear localization signal, present in the nucleus. The transient compartmentalization of Fyn in the nucleus could be important in nuclear signaling...
Zebrafish homolog of the leukemia gene CBFB: its expression during embryogenesis and its relationship to scl and gata-1 in hematopoiesisT Blake
National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Blood 96:4178-84. 2000..Our results indicate that cbfb is expressed in early hematopoietic progenitors and that its expression pattern in the hematopoietic mutants is similar to that of scl. (Blood. 2000;96:4178-4184)..
Maternally controlled (beta)-catenin-mediated signaling is required for organizer formation in the zebrafishC Kelly
Department of Biology, The University of Pennsylvania, Philadelphia, PA 19104, USA
Development 127:3899-911. 2000..This work demonstrates that a maternal gene controlling localization of (beta)-catenin in dorsal nuclei is necessary for dorsal yolk syncytial layer gene activity and formation of the organizer in the zebrafish...
Regulation of dharma/bozozok by the Wnt pathwayS L Ryu
Division of Molecular Oncology, Osaka University Graduate School of Medicine, 2 2 Yamada oka, Suita, Osaka, 565 0871, Japan
Dev Biol 231:397-409. 2001..These data established that dharma/boz functions between the dorsal determinants-mediated Wnt signals and the formation of the Nieuwkoop center...
A role for the extraembryonic yolk syncytial layer in patterning the zebrafish embryo suggested by properties of the hex geneC Y Ho
Department of Biochemistry and Biophysics University of California at San Francisco San Francisco, California, 94143 0448, USA
Curr Biol 9:1131-4. 1999..These findings provide further evidence that the zebrafish YSL is the functional equivalent of the mouse visceral endoderm and that extraembryonic structures may regulate early embryonic patterning in many vertebrates...
The zebrafish bozozok locus encodes Dharma, a homeodomain protein essential for induction of gastrula organizer and dorsoanterior embryonic structuresK Fekany
Department of Molecular Biology, Vanderbilt University, Box 1820, Station B, Nashville, TN 37235, USA
Development 126:1427-38. 1999....
Zebrafish fgf3 and fgf8 encode redundant functions required for otic placode inductionB T Phillips
Biology Department, Texas A and M University, College Station, TX 77843-3258, USA
Dev Biol 235:351-65. 2001..These data support the hypothesis that fgf3 and fgf8 cooperate during the latter half of gastrulation to induce differentiation of otic placodes...
A novel sox gene, 226D7, acts downstream of Nodal signaling to specify endoderm precursors in zebrafishT Sakaguchi
Division of Early Embryogenesis, National Institute of Genetics, Mishima 411-8540, Shizuoka, Japan
Mech Dev 107:25-38. 2001..Taken together, our data demonstrate that 226D7 is a downstream target of Nodal signal and a critical transcriptional regulator of early endoderm formation...
Tight transcriptional control of the ETS domain factors Erm and Pea3 by Fgf signaling during early zebrafish developmentF Raible
Max Planck Institute for Molecular Cell Biology and Genetics, Pfotenhauerstrasse 108, D 01307 Dresden, Germany
Mech Dev 107:105-17. 2001....
Antivin, a novel and divergent member of the TGFbeta superfamily, negatively regulates mesoderm inductionC Thisse
Institut de Genetique et de Biologie Moleculaire et Cellulaire, CNRS INSERM ULP, BP 163, CU de Strasbourg, France u strasbg fr
Development 126:229-40. 1999..On the basis of its expression and activity, we propose that Antivin normally functions as a competitive inhibitor of Activin to limit mesoderm induction in the early embryo...
The zebrafish buttonhead-like factor Bts1 is an early regulator of pax2.1 expression during mid-hindbrain developmentA Tallafuss
Zebrafish Neurogenetics Junior Research Group, Institute of Virology, Technical University-Munich, Trogerstrasse 4b, 81675 Munich, Germany
Development 128:4021-34. 2001..In addition, they imply that flies and vertebrates, to control the development of a boundary embryonic region, have probably co-opted a similar strategy: the restriction to this territory of the expression of a Btd/Sp-like factor...
Evidence for a frizzled-mediated wnt pathway required for zebrafish dorsal mesoderm formationA Nasevicius
Department of Biochemistry and Institute of Human Genetics, University of Minnesota Medical School, Minneapolis, MN 55455, USA
Development 125:4283-92. 1998..This frizzled -mediated wnt pathway for dorsal mesoderm specification provides the first evidence for the requirement of a wnt-like signal in vertebrate axis determination...
Research Grants
- Control of Cell Polarity in C. elegansMichael Herman; Fiscal Year: 2005..By doing so, we can work our way backwards through the cell polarity pathway. Finally, we aim to determine whether a spatially localized LIN-44 signal is required for proper cell polarity ..
- Cadherin6 and -10 Function in Retinal Ganglion and Amacrine Cell DevelopmentQin Liu; Fiscal Year: 2007....
- Zebrafish Protein & Antibody CoreBrian Kay; Fiscal Year: 2007..amp; Antibody Core will take the first formal step in creating a national resource for the production of zebrafish proteins and their respective antibodies for use by the zebrafish research community...
- MYOFIBRILLOGENESIS IN LIVING SKELETAL MUSCLE CELLSJoseph Sanger; Fiscal Year: 2004..These approaches should yield new insights into basic and pathologic processes in myofibril assembly in skeletal muscle cells. ..
- SPECIFICATION OF FAST AND SLOW MUSCLES IN ZEBRAFISHShao Jun Du; Fiscal Year: 2003..The long-term goal of this study is to elucidate the molecular mechanisms behind determination of muscle-specific cell fate during embryonic development. ..
- Wnt and beta-Catenin Signaling in Development/DiseaseMariann Bienz; Fiscal Year: 2006..Basic researchers and the pharmaceutical and biotechnology industry are invited to discuss how to exploit model systems and how to translate knowledge from these into drug development. ..
- Zebrafish in Comparative Context: A SymposiumThomas Schilling; Fiscal Year: 2006....
- Role of Endothelins in Skeletal Patterning in ZebrafishThomas Schilling; Fiscal Year: 2005..abstract_text> ..
- DEVELOPMENT OF THE OLFACTORY SYSTEM IN ZEBRAFISHKATHLEEN WHITLOCK; Fiscal Year: 2004..abstract_text> ..
- Retinoid Signaling in Neural Patterning in ZebrafishThomas Schilling; Fiscal Year: 2005..Aim 3 focuses on a particular tissue interaction that requires RA, between the mesoderm and developing neural tube, by using cell transplantation in RALDH2 mutants to get to the biochemical basis for neural patterning. ..
- Retinoid Signaling in Neural Patterning in ZebrafishThomas Schilling; Fiscal Year: 2009....
- Development of gonadotropin releasing hormone cellsKATHLEEN WHITLOCK; Fiscal Year: 2009....
- THE ROLE OF ATROPHIN-2 IN CARTILAGE PATTERNING AND POLARITY IN ZEBRAFISHThomas F Schilling; Fiscal Year: 2010..These processes are likely to persist in the adult skeleton, and to be altered in human malformations and diseases of the skeleton. ..
- Retinoid Signaling in Neural Patterning in ZebrafishThomas Schilling; Fiscal Year: 2007....
- THE ROLE OF ATROPHIN-2 IN CARTILAGE PATTERNING AND POLARITY IN ZEBRAFISHThomas Schilling; Fiscal Year: 2007..These processes are likely to persist in the adult skeleton, and to be altered in human malformations and diseases of the skeleton. ..
- TRANSCRIPTION FACTORS INVOLVED IN HEART DEVELOPMENTANTHONY FIRULLI; Fiscal Year: 2007..The understanding gained from this proposal will add significant insight into the molecular mechanisms that drive heart formation and go awry in human disease. ..
- Regulation of Hematopoietic Stem Cell Self-RenewalTannishtha Reya; Fiscal Year: 2010..abstract_text> ..
- CRANIOFACIAL MORPHOGENESIS IN ZEBRAFISHCharles B Kimmel; Fiscal Year: 2010....
- DEVELOPMENT OF CHARACTERIZED NEURONSCharles Kimmel; Fiscal Year: 2002..Transplantation of single identified postmitotic young neurons in the early brain segments will be used to examine the molecular-genetic nature of cellular commitment to segmental identity. ..
- Role of Young Thrombocytes and Their MicroparticlesPudur Jagadeeswaran; Fiscal Year: 2007..Such studies should provide insight into the role of platelet microparticles in hemostasis, mechanisms of their production and platelet maturation. ..
- Fish as Genetic Models for AgingPudur Jagadeeswaran; Fiscal Year: 2002..These results will also serve as preliminary data for a future NIH R01 grant application focusing on screening of Cynolebias mutants for long life span. ..
- Predoctoral Fellowship for Minority StudentsLisa Chang; Fiscal Year: 2006..Some of these include microarray screening, DNA-binding assays, microinjection, microsurgery, in-situ hybridization, antisense and dominant negative inhibition of gene function, and transgenics. ..
- PRESENILIN ENDOPROTEASE & GAMMA-SECRETASE ACTIVITYWeiming Xia; Fiscal Year: 2003..abstract_text> ..
- SATURATION MUTAGENESIS OF ZEBRAFISH COAGULATION PATHWAYPudur Jagadeeswaran; Fiscal Year: 2003..Identification of human homologues will further our understanding of how the coagulation cascade functions in vivo, suggest novel targets for antithrombotic therapy and provide candidate genetic markers for thrombotic disease. ..
- Regulation of Embryonic Erythropoiesis by BMP SignalingTodd Evans; Fiscal Year: 2007..Our experiments should help to define the specificity of an important stem and progenitor cell regulatory pathway that is controlled in blood cells by BMPs. ..
- Dynamics of Proteins in the A-bands of Cardiac MuscleJoseph Sanger; Fiscal Year: 2009..The advanced imaging methods coupled with molecular biological and biochemical techniques should yield new insights into basic and pathologic processes in myofibril assembly in living cardiomyocytes. ..
- MYOFIBRILLOGENESIS IN LIVING CARDIAC MUSCLE CELLSJoseph Sanger; Fiscal Year: 2003..These approaches should yield new insights into basic and pathologic processes in myofibril assembly in living cardiomyocytes. ..
