gammaproteobacteria

Summary

Summary: A group of the proteobacteria comprised of facultatively anaerobic and fermentative gram-negative bacteria.

Top Publications

  1. Williams K, Gillespie J, Sobral B, Nordberg E, Snyder E, Shallom J, et al. Phylogeny of gammaproteobacteria. J Bacteriol. 2010;192:2305-14 pubmed publisher
    The phylogeny of the large bacterial class Gammaproteobacteria has been difficult to resolve...
  2. Rodriguez Lanetty M, Granados Cifuentes C, Barberan A, Bellantuono A, Bastidas C. Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides. Mol Ecol. 2013;22:4349-4362 pubmed publisher
    ..We further discuss that some of these rare bacterial members show significant association with other members of the community reflecting the complexity of the networked consortia within the coral holobiont. ..
  3. Suvorova I, Tutukina M, Ravcheev D, Rodionov D, Ozoline O, Gelfand M. Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria. J Bacteriol. 2011;193:3956-63 pubmed publisher
    ..genomics approach to reconstruct the hexuronate metabolic pathways and transcriptional regulons in gammaproteobacteria. We demonstrate differences in the binding motifs of UxuR and ExuR, identify new candidate members of the ..
  4. Csotonyi J, Stackebrandt E, Swiderski J, Schumann P, Yurkov V. Chromocurvus halotolerans gen. nov., sp. nov., a gammaproteobacterial obligately aerobic anoxygenic phototroph, isolated from a Canadian hypersaline spring. Arch Microbiol. 2011;193:573-82 pubmed publisher
    ..Phylogenetic analysis of the 16S rRNA gene sequence revealed that it belonged to the Gammaproteobacteria, forming a distinct branch of phototrophs distantly related to most described aerobic anoxygenic ..
  5. Lenk S, Arnds J, Zerjatke K, Musat N, Amann R, Mussmann M. Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment. Environ Microbiol. 2011;13:758-74 pubmed publisher
    ..The 16S rRNA gene analysis revealed that distinct clades of uncultured Gammaproteobacteria are important SOP in the tidal sediments...
  6. Aït Bara S, Carpousis A. Characterization of the RNA degradosome of Pseudoalteromonas haloplanktis: conservation of the RNase E-RhlB interaction in the gammaproteobacteria. J Bacteriol. 2010;192:5413-23 pubmed publisher
    ..Since the activity of Ec-RhlB requires its physical interaction with Ec-RNase E, conservation of the underlying structural motif over a large evolutionary distance could be due to constraints involved in the control of RhlB activity...
  7. Yang C, Chen M, Arun A, Chen C, Wang J, Chen W. Endozoicomonas montiporae sp. nov., isolated from the encrusting pore coral Montipora aequituberculata. Int J Syst Evol Microbiol. 2010;60:1158-62 pubmed publisher
    ..nov. is proposed. The type strain is CL-33(T) (=LMG 24815(T) =BCRC 17933(T))...
  8. Guri M, Durand L, Cueff Gauchard V, Zbinden M, Crassous P, Shillito B, et al. Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata. ISME J. 2012;6:597-609 pubmed publisher
    ..exoculata life cycle stage (egg libraries dominated by the Gammaproteobacteria) and later stages (juvenile/adult libraries dominated by the Epsilonproteobacteria)...
  9. Nishijima M, Adachi K, Katsuta A, Shizuri Y, Yamasato K. Endozoicomonas numazuensis sp. nov., a gammaproteobacterium isolated from marine sponges, and emended description of the genus Endozoicomonas Kurahashi and Yokota 2007. Int J Syst Evol Microbiol. 2013;63:709-14 pubmed publisher
    Two non-motile, rod-shaped gammaproteobacteria were isolated from marine sponges collected from the coast of Japan at Numazu. The isolates were oxidase- and catalase-positive facultative anaerobes that fermented carbohydrates...

More Information

Publications71

  1. Yang H, Liu L, Li J, Du G, Chen J. Structure-based replacement of methionine residues at the catalytic domains with serine significantly improves the oxidative stability of alkaline amylase from alkaliphilic Alkalimonas amylolytica. Biotechnol Prog. 2012;28:1271-7 pubmed publisher
    ..This work provides an effective strategy to improve the oxidative stability of amylase, and the high oxidation resistance of the mutant enzymes shows their potential applications in the detergent and textile industries...
  2. Pike R, Haltli B, Kerr R. Description of Endozoicomonas euniceicola sp. nov. and Endozoicomonas gorgoniicola sp. nov., bacteria isolated from the octocorals Eunicea fusca and Plexaura sp., and an emended description of the genus Endozoicomonas. Int J Syst Evol Microbiol. 2013;63:4294-302 pubmed publisher
    ..nov. An emended description of the genus Endozoicomonas is also provided to encompass differences observed in the results of genotypic, chemotaxonomic and phenotypic tests compared from the original and amended genus descriptions. ..
  3. Spring S, Riedel T. Mixotrophic growth of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria is carbon-starvation independent and correlates with the type of carbon source and oxygen availability. BMC Microbiol. 2013;13:117 pubmed publisher
    ..dominated by members of the Roseobacter lineage within the Alphaproteobacteria and the OM60/NOR5 clade of gammaproteobacteria. A wealth of information exists about the regulation of pigment production and mixotrophic growth in ..
  4. Spring S, Riedel T, Sproer C, Yan S, Harder J, Fuchs B. Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. BMC Microbiol. 2013;13:118 pubmed publisher
    Aerobic gammaproteobacteria affiliated to the OM60/NOR5 clade are widespread in saline environments and of ecological importance in several marine ecosystems, especially the euphotic zone of coastal areas...
  5. Kaiwa N, Hosokawa T, Kikuchi Y, Nikoh N, Meng X, Kimura N, et al. Primary gut symbiont and secondary, Sodalis-allied symbiont of the Scutellerid stinkbug Cantao ocellatus. Appl Environ Microbiol. 2010;76:3486-94 pubmed publisher
    ..Phylogenetic analyses revealed that the bacterium constitutes a distinct lineage in the Gammaproteobacteria, not closely related to gut symbionts of other stinkbugs...
  6. Walsh D, Zaikova E, Howes C, Song Y, Wright J, Tringe S, et al. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science. 2009;326:578-82 pubmed publisher
    ..Our analysis provides a genomic foundation for understanding the ecological and biogeochemical role of pelagic SUP05 in oxygen-deficient oceanic waters and its potential sensitivity to environmental changes...
  7. McCutcheon J, McDonald B, Moran N. Convergent evolution of metabolic roles in bacterial co-symbionts of insects. Proc Natl Acad Sci U S A. 2009;106:15394-9 pubmed publisher
  8. Jang Y, Oh H, Kang I, Lee K, Yang S, Cho J. Genome sequence of strain IMCC3088, a proteorhodopsin-containing marine bacterium belonging to the OM60/NOR5 clade. J Bacteriol. 2011;193:3415-6 pubmed publisher
    ..Here, the genome sequence of strain IMCC3088 is presented, showing the absence of photosynthetic gene clusters and the presence of proteorhodopsin...
  9. Cramer M, Haghshenas N, Bagwell C, Matsui G, Lovell C. Celerinatantimonas diazotrophica gen. nov., sp. nov., a nitrogen-fixing bacterium representing a new family in the Gammaproteobacteria, Celerinatantimonadaceae fam. nov. Int J Syst Evol Microbiol. 2011;61:1053-60 pubmed publisher
    Five strains representing a novel family within the Gammaproteobacteria were isolated from the estuarine grasses Spartina alterniflora and Juncus roemerianus...
  10. McCutcheon J, von Dohlen C. An interdependent metabolic patchwork in the nested symbiosis of mealybugs. Curr Biol. 2011;21:1366-72 pubmed publisher
    ..Pseudococcidae) contains dual bacterial symbionts existing with an unprecedented organization: an unnamed gammaproteobacteria, for which we propose the name Candidatus Moranella endobia, lives inside the betaproteobacteria Candidatus ..
  11. Petersen J, Ramette A, Lott C, Cambon Bonavita M, Zbinden M, Dubilier N. Dual symbiosis of the vent shrimp Rimicaris exoculata with filamentous gamma- and epsilonproteobacteria at four Mid-Atlantic Ridge hydrothermal vent fields. Environ Microbiol. 2010;12:2204-18 pubmed publisher
    ..We hypothesize that biogeography and host-symbiont selectivity play a role in structuring the epibiosis of R. exoculata...
  12. Sowell S, Abraham P, Shah M, Verberkmoes N, Smith D, Barofsky D, et al. Environmental proteomics of microbial plankton in a highly productive coastal upwelling system. ISME J. 2011;5:856-65 pubmed publisher
    ..microbial clades were also well represented, including the Roseobacter clade (17%), oligotrophic marine gammaproteobacteria group (6%), OM43 clade (1%). Viral origins were attributed to 2.5% of proteins...
  13. Teeling H, Fuchs B, Becher D, Klockow C, Gardebrecht A, Bennke C, et al. Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science. 2012;336:608-11 pubmed publisher
    ..and phosphate acquisition strategies were found, indicating that distinct populations of Bacteroidetes, Gammaproteobacteria, and Alphaproteobacteria are specialized for successive decomposition of algal-derived organic matter...
  14. Canfield D, Stewart F, Thamdrup B, De Brabandere L, Dalsgaard T, DeLong E, et al. A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science. 2010;330:1375-8 pubmed publisher
    ..This cryptic sulfur cycle is linked to anammox and other nitrogen cycling processes, suggesting that it may influence biogeochemical cycling in the global ocean...
  15. Bayer T, Neave M, Alsheikh Hussain A, Aranda M, Yum L, Mincer T, et al. The microbiome of the Red Sea coral Stylophora pistillata is dominated by tissue-associated Endozoicomonas bacteria. Appl Environ Microbiol. 2013;79:4759-62 pubmed publisher
    ..Novel Endozoicomonas-specific probes revealed that Endozoicomonas bacteria were abundant in the endodermal tissues of S. pistillata and appear to have an intimate relationship with the coral. ..
  16. Glaubitz S, Labrenz M, Jost G, Jürgens K. Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing. FEMS Microbiol Ecol. 2010;74:32-41 pubmed publisher
    ..Together, these findings emphasize the importance of chemolithoautotrophic members of the Sulfurimonas and GSO groups in the carbon, nitrogen, and sulfur cycles of oxic-anoxic pelagic transition zones...
  17. Hügler M, Gartner A, Imhoff J. Functional genes as markers for sulfur cycling and CO2 fixation in microbial communities of hydrothermal vents of the Logatchev field. FEMS Microbiol Ecol. 2010;73:526-37 pubmed publisher
    ..Another important group in this habitat, the Gammaproteobacteria, may use the adenosine 5'-phosphosulfate pathway and the Calvin-Benson-Bassham cycle, deduced from the ..
  18. Hazen T, Dubinsky E, DeSantis T, Andersen G, Piceno Y, Singh N, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science. 2010;330:204-8 pubmed publisher
    ..Based on these results, the potential exists for intrinsic bioremediation of the oil plume in the deep-water column without substantial oxygen drawdown...
  19. Li H, Zhang X, Chen C, Zhang Y, Gao Z, Yu Y, et al. Zhongshania antarctica gen. nov., sp. nov. and Zhongshania guokunii sp. nov., gammaproteobacteria respectively isolated from coastal attached (fast) ice and surface seawater of the Antarctic. Int J Syst Evol Microbiol. 2011;61:2052-7 pubmed publisher
    ..0?% sequence similarity) and belonged to the class Gammaproteobacteria, with their closest relatives being Spongiibacter and Melitea species (93.1-94.3?% sequence similarity)...
  20. Thrash J, Cho J, Ferriera S, Johnson J, Vergin K, Giovannoni S. Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria. J Bacteriol. 2010;192:3842-3 pubmed publisher
    Organisms in the OM60/NOR5 clade of the Gammaproteobacteria are ubiquitous in the world's oceans and can make up as much as 11% of bacterial cells in certain areas...
  21. Park S, Yoshizawa S, Kogure K, Yokota A. Oceanicoccus sagamiensis gen. nov., sp. nov., a gammaproteobacterium isolated from sea water of Sagami Bay in Japan. J Microbiol. 2011;49:233-7 pubmed publisher
    ..based on 16S rRNA gene sequences revealed that the novel isolate could be affiliated with the class Gammaproteobacteria. Strain PZ-5(T) showed below 93...
  22. Duperron S, De Beer D, Zbinden M, Boetius A, Schipani V, Kahil N, et al. Molecular characterization of bacteria associated with the trophosome and the tube of Lamellibrachia sp., a siboglinid annelid from cold seeps in the eastern Mediterranean. FEMS Microbiol Ecol. 2009;69:395-409 pubmed publisher
    ..The diversity of 16S rRNA gene phylotypes includes representatives from the same divisions previously identified from the tube of the vent species Riftia pachyptila, and others commonly found at seeps and vents...
  23. Rouchet R, Vorburger C. Strong specificity in the interaction between parasitoids and symbiont-protected hosts. J Evol Biol. 2012;25:2369-75 pubmed publisher
    ..This genotype specificity appears to be mediated by H. defensa, highlighting the important role that endosymbionts can play in host-parasite coevolution...
  24. Williams K, Kelly D. Proposal for a new class within the phylum Proteobacteria, Acidithiobacillia classis nov., with the type order Acidithiobacillales, and emended description of the class Gammaproteobacteria. Int J Syst Evol Microbiol. 2013;63:2901-6 pubmed publisher
    The order Acidithiobacillales was previously assigned to the class Gammaproteobacteria. Recent analyses have indicated that this order actually lies outside all the proteobacterial classes, as a sister group to the combined classes ..
  25. Park S, Yoshizawa S, Inomata K, Kogure K, Yokota A. Halioglobus japonicus gen. nov., sp. nov. and Halioglobus pacificus sp. nov., members of the class Gammaproteobacteria isolated from seawater. Int J Syst Evol Microbiol. 2012;62:1784-9 pubmed publisher
    ..nov., within the class Gammaproteobacteria. The names proposed are Halioglobus japonicus sp. nov...
  26. Jessen C, Villa Lizcano J, Bayer T, Roder C, Aranda M, Wild C, et al. In-situ effects of eutrophication and overfishing on physiology and bacterial diversity of the red sea coral Acropora hemprichii. PLoS ONE. 2013;8:e62091 pubmed publisher
    ..Our data underlines the importance of conducting field studies in a holobiont framework, taking both, physiological and molecular measures into account...
  27. Yang H, Liu L, Wang M, Li J, Wang N, Du G, et al. Structure-based engineering of methionine residues in the catalytic cores of alkaline amylase from Alkalimonas amylolytica for improved oxidative stability. Appl Environ Microbiol. 2012;78:7519-26 pubmed publisher
    ..The resistance of the wild-type enzyme and the mutants to surfactants and detergents was also investigated. Our results indicate that the M247L mutant has great potential in the detergent and textile industries...
  28. Hosokawa T, Kikuchi Y, Nikoh N, Meng X, Hironaka M, Fukatsu T. Phylogenetic position and peculiar genetic traits of a midgut bacterial symbiont of the stinkbug Parastrachia japonensis. Appl Environ Microbiol. 2010;76:4130-5 pubmed publisher
    ..and groEL gene sequences consistently indicated that this symbiont constituted a distinct lineage in the Gammaproteobacteria that has no close relatives but is allied with gut symbionts of acanthosomatid and plataspid stinkbugs, as ..
  29. Elshahawi S, Trindade Silva A, Hanora A, Han A, Flores M, Vizzoni V, et al. Boronated tartrolon antibiotic produced by symbiotic cellulose-degrading bacteria in shipworm gills. Proc Natl Acad Sci U S A. 2013;110:E295-304 pubmed publisher
    ..are marine wood-boring bivalve mollusks (family Teredinidae) that harbor a community of closely related Gammaproteobacteria as intracellular endosymbionts in their gills...
  30. Rodrigues C, Duperron S. Distinct symbiont lineages in three thyasirid species (Bivalvia: Thyasiridae) from the eastern Atlantic and Mediterranean Sea. Naturwissenschaften. 2011;98:281-7 pubmed publisher
    ..harbours a single phylotype of symbiont that belongs to a distinct lineage of putative sulphur-oxidizing Gammaproteobacteria. This result is confirmed by other marker genes (encoding 23S rRNA and APS reductase) and fluorescence in ..
  31. Fu Y, Deiorio Haggar K, Anthony J, Meyer M. Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria. Nucleic Acids Res. 2013;41:3491-503 pubmed publisher
    ..distributed across many phyla of bacteria, seven of the RNAs are narrowly distributed to a few orders of Gammaproteobacteria. To experimentally validate our computational predictions, we biochemically confirmed dual L1-binding sites ..
  32. Jensen S, Duperron S, Birkeland N, Hovland M. Intracellular Oceanospirillales bacteria inhabit gills of Acesta bivalves. FEMS Microbiol Ecol. 2010;74:523-33 pubmed publisher
    ..Oceanospirillales and its 16S rRNA gene fell within a clade of strictly marine invertebrate-associated Gammaproteobacteria. Visual inspection by fluorescent in situ hybridization and transmission electron microscopy indicated a ..
  33. Gatehouse L, Sutherland P, Forgie S, Kaji R, Christeller J. Molecular and histological characterization of primary (betaproteobacteria) and secondary (gammaproteobacteria) endosymbionts of three mealybug species. Appl Environ Microbiol. 2012;78:1187-97 pubmed publisher
    ..as "Candidatus Tremblaya princeps," a betaproteobacterium, and the secondary endosymbionts as gammaproteobacteria closely related to Sodalis glossinidius...
  34. Swan B, Martinez Garcia M, Preston C, Sczyrba A, Woyke T, Lamy D, et al. Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science. 2011;333:1296-300 pubmed publisher
    ..Multiple cells of Deltaproteobacteria cluster SAR324, Gammaproteobacteria clusters ARCTIC96BD-19 and Agg47, and some Oceanospirillales from the lower mesopelagic contained ribulose-..
  35. Lefèvre C, Viloria N, Schmidt M, Posfai M, Frankel R, Bazylinski D. Novel magnetite-producing magnetotactic bacteria belonging to the Gammaproteobacteria. ISME J. 2012;6:440-50 pubmed publisher
    ..Based on 16S rRNA gene sequences, both strains are phylogenetically affiliated with the Gammaproteobacteria class...
  36. Augustus A, Spicer L. The MetJ regulon in gammaproteobacteria determined by comparative genomics methods. BMC Genomics. 2011;12:558 pubmed publisher
    ..These include some that are pathogenic (e.g. Yersinia) and some that are important for environmental remediation (e.g. Shewanella) but many of which have not been extensively characterized in the literature...
  37. Mendoza M, Güiza L, Martinez X, Caraballo X, Rojas J, Aranguren L, et al. A novel agent (Endozoicomonas elysicola) responsible for epitheliocystis in cobia Rachycentrum canadum larvae. Dis Aquat Organ. 2013;106:31-7 pubmed publisher
    ..Specific primers were also designed for diagnostic purposes. This is the first report of epitheliocystis in cobia larvae and also the first report of E. elysicola as an epitheliocystis-causing agent. ..
  38. Zhao B, Houry W. Acid stress response in enteropathogenic gammaproteobacteria: an aptitude for survival. Biochem Cell Biol. 2010;88:301-14 pubmed publisher
    ..The decarboxylase systems are also found in Vibrio cholera, Vibrio vulnifus, Shigella flexneri, and Salmonella typhimurium, although some differences exist in their functional mechanism and regulation...
  39. Pérez A, Angarica V, Vasconcelos A, Collado Vides J. Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes. Nucleic Acids Res. 2007;35:D132-6 pubmed
  40. Alonso Sáez L, Balague V, Sà E, Sanchez O, Gonzalez J, Pinhassi J, et al. Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol Ecol. 2007;60:98-112 pubmed
    ..b>Gammaproteobacteria showed a peak during summer (8% of DAPI counts), when most of them belonged to the NOR5 cluster...
  41. Schattenhofer M, Fuchs B, Amann R, Zubkov M, Tarran G, Pernthaler J. Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean. Environ Microbiol. 2009;11:2078-93 pubmed publisher
    ..25%), the biomass of Prochlorococcus peaked in the tropical Atlantic Ocean, and Bacteroidetes and Gammaproteobacteria bloomed in the nutrient-rich northern temperate waters and in the Benguela upwelling...
  42. Elifantz H, Malmstrom R, Cottrell M, Kirchman D. Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Appl Environ Microbiol. 2005;71:7799-805 pubmed
    ..contributed the most in the freshwater section, whereas Cytophaga-like bacteria and Alpha- and Gammaproteobacteria participated in EPS assimilation in the lower part of the estuary...
  43. Takiya D, Tran P, Dietrich C, Moran N. Co-cladogenesis spanning three phyla: leafhoppers (Insecta: Hemiptera: Cicadellidae) and their dual bacterial symbionts. Mol Ecol. 2006;15:4175-91 pubmed
    ..Sulcia shows a fivefold lower rate of 16S rDNA sequence divergence than does Baumannia for the same host pairs. The term 'coprimary' symbiont is proposed for such cases. ..
  44. Stewart F, Cavanaugh C. Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam. Environ Microbiol. 2009;11:2136-47 pubmed publisher
    ..Vesicomyid symbionts (Gammaproteobacteria) are presumed to be obligately intracellular, to undergo nearly strict vertical transmission between host ..
  45. Price M, Arkin A, Alm E. The life-cycle of operons. PLoS Genet. 2006;2:e96 pubmed
    ..Although operon evolution may be adaptive, it need not be optimal: new operons often comprise functionally unrelated genes that were already in proximity before the operon formed. ..
  46. Yan S, Fuchs B, Lenk S, Harder J, Wulf J, Jiao N, et al. Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria. Syst Appl Microbiol. 2009;32:124-39 pubmed publisher
    ..litoralis" strain KT71, the first cultured representative of marine aerobic anoxygenic phototrophic Gammaproteobacteria. More than 500 16S rRNA sequences affiliated with this clade were retrieved from public databases...
  47. Fisher C, Girguis P. Microbiology. A proteomic snapshot of life at a vent. Science. 2007;315:198-9 pubmed
  48. Baumann P. Biology bacteriocyte-associated endosymbionts of plant sap-sucking insects. Annu Rev Microbiol. 2005;59:155-89 pubmed
  49. Waldminghaus T, Fippinger A, Alfsmann J, Narberhaus F. RNA thermometers are common in alpha- and gamma-proteobacteria. Biol Chem. 2005;386:1279-86 pubmed
    ..Combining two regulatory modules, a sigma(32) promoter and a ROSE-type RNA thermometer, provides a novel stringent mechanism to control expression of small heat-shock genes...
  50. Kampfer P, Lindh J, Terenius O, Haghdoost S, Falsen E, Busse H, et al. Thorsellia anophelis gen. nov., sp. nov., a new member of the Gammaproteobacteria. Int J Syst Evol Microbiol. 2006;56:335-8 pubmed
    ..nov., sp. nov. is proposed. The type strain is CCUG 49520T (=CIP 108754T)...
  51. Fuchs B, Spring S, Teeling H, Quast C, Wulf J, Schattenhofer M, et al. Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc Natl Acad Sci U S A. 2007;104:2891-6 pubmed
    ..KT71 enables future experiments investigating the importance of this group of gammaproteobacterial AAnPs in coastal environments...
  52. Li H, Yu Y, Luo W, Zeng Y, Chen B. Bacterial diversity in surface sediments from the Pacific Arctic Ocean. Extremophiles. 2009;13:233-46 pubmed publisher
    ..The community composition was different among sampling sites, which potentially was related to geochemical differences...
  53. Gao B, Mohan R, Gupta R. Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria. Int J Syst Evol Microbiol. 2009;59:234-47 pubmed publisher
    The class Gammaproteobacteria, which forms one of the largest groups within bacteria, is currently distinguished from other bacteria solely on the basis of its branching in phylogenetic trees...
  54. Kurahashi M, Yokota A. Endozoicomonas elysicola gen. nov., sp. nov., a gamma-proteobacterium isolated from the sea slug Elysia ornata. Syst Appl Microbiol. 2007;30:202-6 pubmed
    ..nov., sp. nov. is proposed. (type strain MKT110(T)=IAM 15107(T)=KCTC 12372(T); GenBank accession no. AB196667)...
  55. Nakagawa T, Iino T, Suzuki K, Harayama S. Ferrimonas futtsuensis sp. nov. and Ferrimonas kyonanensis sp. nov., selenate-reducing bacteria belonging to the Gammaproteobacteria isolated from Tokyo Bay. Int J Syst Evol Microbiol. 2006;56:2639-45 pubmed
    ..nov. (type strain FUT3661T=NBRC 101558T=DSM 18154T) and Ferrimonas kyonanensis sp. nov. (type strain Asr22-7T=NBRC 101286T=DSM 18153T) are proposed...
  56. Blazejak A, Kuever J, Erséus C, Amann R, Dubilier N. Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5'-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (oligochaeta) from Bermuda and the Bahamas. Appl Environ Microbiol. 2006;72:5527-36 pubmed
  57. Brettar I, Christen R, Höfle M. Rheinheimera perlucida sp. nov., a marine bacterium of the Gammaproteobacteria isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol. 2006;56:2177-83 pubmed
    ..Phylogenetic analyses of the 16S rRNA gene sequence revealed a clear affiliation with the Gammaproteobacteria, and showed closest phylogenetic relationships with the genera Alishewanella and Rheinheimera...
  58. Angibaud S, Fertin G, Rusu I, Thévenin A, Vialette S. Efficient tools for computing the number of breakpoints and the number of adjacencies between two genomes with duplicate genes. J Comput Biol. 2008;15:1093-115 pubmed publisher
    ..All these programs are run on a well-known public benchmark dataset of gamma-Proteobacteria, and their performances are discussed...
  59. Cho J, Stapels M, Morris R, Vergin K, Schwalbach M, Givan S, et al. Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ Microbiol. 2007;9:1456-63 pubmed
    ..marine AAP are alpha-3 and alpha-4 Proteobacteria, but metagenomic evidence indicates that uncultured AAP Gammaproteobacteria are important members of ocean surface microbial communities...
  60. Duperron S, Halary S, Lorion J, Sibuet M, Gaill F. Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae). Environ Microbiol. 2008;10:433-45 pubmed
  61. Graeber I, Kaesler I, Borchert M, Dieckmann R, Pape T, Lurz R, et al. Spongiibacter marinus gen. nov., sp. nov., a halophilic marine bacterium isolated from the boreal sponge Haliclona sp. 1. Int J Syst Evol Microbiol. 2008;58:585-90 pubmed publisher
    ..analysis supported by 16S rRNA gene sequence comparison classified the strain as a member of the class Gammaproteobacteria. Strain HAL40b(T) was only distantly related to other marine bacteria including Neptunomonas naphthovorans ..
  62. Gil R, Belda E, Gosalbes M, Delaye L, Vallier A, Vincent Monegat C, et al. Massive presence of insertion sequences in the genome of SOPE, the primary endosymbiont of the rice weevil Sitophilus oryzae. Int Microbiol. 2008;11:41-8 pubmed