rhodobacteraceae

Summary

Summary: A family in the order Rhodobacterales, class ALPHAPROTEOBACTERIA.

Top Publications

  1. Sertan de Guzman A, Predicala R, Bernardo E, Neilan B, Elardo S, Mangalindan G, et al. Pseudovibrio denitrificans strain Z143-1, a heptylprodigiosin-producing bacterium isolated from a Philippine tunicate. FEMS Microbiol Lett. 2007;277:188-96 pubmed
    ..While there is no report of a secondary metabolite for Pseudovibrio denitrificans, Z143-1 produces the red pigment heptylprodigiosin, also known as 16-methyl-15-heptyl-prodiginine, which shows anti-Staphylococcus aureus activity...
  2. Bürgmann H, Howard E, Ye W, Sun F, Sun S, Napierala S, et al. Transcriptional response of Silicibacter pomeroyi DSS-3 to dimethylsulfoniopropionate (DMSP). Environ Microbiol. 2007;9:2742-55 pubmed
    ..DMSP concentration may thus also play a role as a chemical signal, indicating phytoplankton abundance and eliciting a regulatory response aimed at making maximum use of available nutrients...
  3. Christie Oleza J, Fernandez B, Nogales B, Bosch R, Armengaud J. Proteomic insights into the lifestyle of an environmentally relevant marine bacterium. ISME J. 2012;6:124-35 pubmed publisher
    ..We suggest that the other half of its theoretical proteome is the opportunist genetic pool devoted exclusively to very specific environmental conditions...
  4. Geng H, Belas R. Expression of tropodithietic acid biosynthesis is controlled by a novel autoinducer. J Bacteriol. 2010;192:4377-87 pubmed publisher
    ..These results indicate that TDA acts as an autoinducer of its own synthesis and suggest that roseobacters may use TDA as a quorum signal...
  5. D Alvise P, Lillebø S, Prol Garcia M, Wergeland H, Nielsen K, Bergh Ø, et al. Phaeobacter gallaeciensis reduces Vibrio anguillarum in cultures of microalgae and rotifers, and prevents vibriosis in cod larvae. PLoS ONE. 2012;7:e43996 pubmed publisher
    ..It is concluded that P. gallaeciensis is a promising probiont in marine larviculture and that TDA production likely contributes to its probiotic effect...
  6. Muscholl Silberhorn A, Thiel V, Imhoff J. Abundance and bioactivity of cultured sponge-associated bacteria from the Mediterranean sea. Microb Ecol. 2008;55:94-106 pubmed
    ..Members of the genus Bacillus displaying antimicrobial activity were found regularly, too. However, actinomycetes, which are known for their production of bioactive substances, were present in very low abundance...
  7. Zhang D, Li H, Xin Y, Liu H, Chi Z, Zhou P, et al. Phaeobacter arcticus sp. nov., a psychrophilic bacterium isolated from the Arctic. Int J Syst Evol Microbiol. 2008;58:1384-7 pubmed publisher
    ..nov. is proposed. The type strain is 20188(T) (=CGMCC 1.6500(T)=JCM 14644(T))...
  8. Zhang J, Zhou J, Liu J, Chen K, Liu L, Chen J. Development of chemically defined media supporting high cell density growth of Ketogulonicigenium vulgare and Bacillus megaterium. Bioresour Technol. 2011;102:4807-14 pubmed publisher
    ..62 mg L(-1)biotin in a chemically defined medium produced the highest maximum biomass concentration (4.2 × 10(9) cfu mL(-1)), 2-KLG concentration (58 g L(-1)), and yield (0.76 g g(-1)) after culturing for 28 h...
  9. Howard E, Henriksen J, Buchan A, Reisch C, Bürgmann H, Welsh R, et al. Bacterial taxa that limit sulfur flux from the ocean. Science. 2006;314:649-52 pubmed
    ..One-third of surface ocean bacteria harbor a DMSP demethylase homolog and thereby route a substantial fraction of global marine primary production away from DMS formation and into the marine microbial food web...

More Information

Publications82

  1. Miyazaki T, Sugisawa T, Hoshino T. Pyrroloquinoline quinone-dependent dehydrogenases from Ketogulonicigenium vulgare catalyze the direct conversion of L-sorbosone to L-ascorbic acid. Appl Environ Microbiol. 2006;72:1487-95 pubmed
    ..vulgare indicated that all of the SNDH proteins are encoded by the sndH gene. The 55-kDa subunit was derived from the 75-kDa subunit, as indicated by cleavage of the C-terminal domain in the bacterial cells...
  2. Biebl H, Allgaier M, Tindall B, Koblizek M, Lünsdorf H, Pukall R, et al. Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates. Int J Syst Evol Microbiol. 2005;55:1089-96 pubmed
    ..Therefore, it is proposed to classify the strains in a new genus and species within the Roseobacter clade, Dinoroseobacter shibae gen. nov., sp. nov. The type strain is DFL 12(T) (=DSM 16493(T)=NCIMB 14021(T))...
  3. O Halloran J, Barbosa T, Morrissey J, Kennedy J, Dobson A, O Gara F. Pseudovibrio axinellae sp. nov., isolated from an Irish marine sponge. Int J Syst Evol Microbiol. 2013;63:141-5 pubmed publisher
    ..The name Pseudovibrio axinellae sp. nov. is proposed, with Ad2(T) (= DSM 24994(T) = NCIMB 14761(T)) as the type strain...
  4. Shieh W, Lin Y, Jean W. Pseudovibrio denitrificans gen. nov., sp. nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification. Int J Syst Evol Microbiol. 2004;54:2307-12 pubmed
    ..nov. is proposed. Pseudovibrio denitrificans sp. nov. is the type species, with DN34(T) (=BCRC 17323(T)=JCM 12308(T)) as the type strain...
  5. Martínez Cánovas M, Quesada E, Martínez Checa F, del Moral A, Bejar V. Salipiger mucescens gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium isolated from hypersaline soil, belonging to the alpha-Proteobacteria. Int J Syst Evol Microbiol. 2004;54:1735-40 pubmed
    ..nov., sp. nov. The proposed type strain is strain A3T (= CECT 5855T = LMG 22090T = DSM 16094T)...
  6. Gonzalez J, Covert J, Whitman W, Henriksen J, Mayer F, Scharf B, et al. Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int J Syst Evol Microbiol. 2003;53:1261-9 pubmed
    ..nov. with strain DSS-3(T) (=ATCC 700808(T)=DSM 15171(T)) as the type strain, and Roseovarius nubinhibens sp. nov. with strain ISM(T) (=ATCC BAA-591(T)=DSM 15170(T)) as the type strain...
  7. Todd J, Curson A, Dupont C, Nicholson P, Johnston A. The dddP gene, encoding a novel enzyme that converts dimethylsulfoniopropionate into dimethyl sulfide, is widespread in ocean metagenomes and marine bacteria and also occurs in some Ascomycete fungi. Environ Microbiol. 2009;11:1376-85 pubmed publisher
    ..The dddP gene is abundant in the bacterial metagenomic sequences in the Global Ocean Sampling Expedition. Thus, dddP has several novel features and is widely dispersed, both taxonomically and geographically...
  8. Fu S, Zhang W, Guo A, Wang J. Identification of promoters of two dehydrogenase genes in Ketogulonicigenium vulgare DSM 4025 and their strength comparison in K. vulgare and Escherichia coli. Appl Microbiol Biotechnol. 2007;75:1127-32 pubmed
    ..DCIP decoloration method and reporter plasmids pSDH or pSNDH may be applied to discover promoters of genes in E. coli and to determine their strength in one step...
  9. Porsby C, Nielsen K, Gram L. Phaeobacter and Ruegeria species of the Roseobacter clade colonize separate niches in a Danish Turbot (Scophthalmus maximus)-rearing farm and antagonize Vibrio anguillarum under different growth conditions. Appl Environ Microbiol. 2008;74:7356-64 pubmed publisher
    ..displayed antibacterial activity under a broader range of growth conditions than did Phaeobacter strain 27-4, these organisms may hold greater promise as fish probiotic organisms...
  10. Biers E, Wang K, Pennington C, Belas R, Chen F, Moran M. Occurrence and expression of gene transfer agent genes in marine bacterioplankton. Appl Environ Microbiol. 2008;74:2933-9 pubmed publisher
    ..GTA homologs are surprisingly infrequent in marine metagenomic sequence data, however, and the role of this lateral gene transfer mechanism in ocean bacterioplankton communities remains unclear...
  11. Belas R, Horikawa E, Aizawa S, Suvanasuthi R. Genetic determinants of Silicibacter sp. TM1040 motility. J Bacteriol. 2009;191:4502-12 pubmed publisher
    ..These unique molecular mechanisms may enhance the symbiosis and survival of Roseobacter clade bacteria in the marine environment...
  12. Fürch T, Preusse M, Tomasch J, Zech H, Wagner Dobler I, Rabus R, et al. Metabolic fluxes in the central carbon metabolism of Dinoroseobacter shibae and Phaeobacter gallaeciensis, two members of the marine Roseobacter clade. BMC Microbiol. 2009;9:209 pubmed publisher
    ..Based on information from recently sequenced genomes, a rich repertoire of pathways has been identified in the carbon core metabolism of these organisms, but little is known about the actual contribution of the various reactions in vivo...
  13. Yoon J, Kang S, Lee S, Oh T. Phaeobacter daeponensis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol. 2007;57:856-61 pubmed
    ..nov. is proposed. The type strain is TF-218(T) (=KCTC 12794(T)=JCM 13606(T))...
  14. Todd J, Kirkwood M, Newton Payne S, Johnston A. DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3. ISME J. 2012;6:223-6 pubmed publisher
    ..In addition to DddW, R. pomeroyi DSS-3 had been shown to have two other, different, DMSP lyases, DddP and DddQ, plus an enzyme that demethylates DMSP, emphasizing the importance of this substrate for this model bacterium...
  15. Zan J, Fricke W, Fuqua C, Ravel J, Hill R. Genome sequence of Ruegeria sp. strain KLH11, an N-acylhomoserine lactone-producing bacterium isolated from the marine sponge Mycale laxissima. J Bacteriol. 2011;193:5011-2 pubmed publisher
    ..The genome sequence provides insights into the genetic potential of KLH11 to maintain complex QS systems, and this is the first genome report of a cultivated symbiont from a marine sponge...
  16. Gutierrez T, Singleton D, Aitken M, Semple K. Stable isotope probing of an algal bloom to identify uncultivated members of the Rhodobacteraceae associated with low-molecular-weight polycyclic aromatic hydrocarbon degradation. Appl Environ Microbiol. 2011;77:7856-60 pubmed publisher
    ..bacterial DNA (from naphthalene enrichments) were identified as uncharacterized members of the family Rhodobacteraceae. Quantitative PCR primers targeting the 16S rRNA gene of these uncultivated organisms were used to determine ..
  17. Leduc S, de Troostembergh J, Lebeault J. Folate requirements of the 2-keto-L-gulonic acid-producing strain Ketogulonigenium vulgare LMP P-20356 in L-sorbose/CSL medium. Appl Microbiol Biotechnol. 2004;65:163-7 pubmed
    ..The industrial production of 2-keto-L-gulonic acid by K. vulgare LMP P-20356 could be improved by using media in which low-molecular-weight reduced folates are present...
  18. McDaniel L, Young E, Delaney J, Ruhnau F, Ritchie K, Paul J. High frequency of horizontal gene transfer in the oceans. Science. 2010;330:50 pubmed publisher
    ..These findings suggest a plausible mechanism by which marine bacteria acquire novel traits, thus ensuring resilience in the face of environmental change...
  19. Thole S, Kalhoefer D, Voget S, Berger M, Engelhardt T, Liesegang H, et al. Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life. ISME J. 2012;6:2229-44 pubmed publisher
  20. Thrash J, Cho J, Vergin K, Giovannoni S. Genome sequences of Oceanicola granulosus HTCC2516(T) and Oceanicola batsensis HTCC2597(TDelta). J Bacteriol. 2010;192:3549-50 pubmed publisher
  21. Takagi Y, Sugisawa T, Hoshino T. Continuous 2-Keto-L-gulonic acid fermentation by mixed culture of Ketogulonicigenium vulgare DSM 4025 and Bacillus megaterium or Xanthomonas maltophilia. Appl Microbiol Biotechnol. 2010;86:469-80 pubmed publisher
    ..1%. In the up-scaling fermentation to 30-L jar fermentors, 118.5 g/L of 2KGA was produced when dilution rates in both stages were 0.0430 hour(-1), and the overall productivity was calculated to be 2.55 g/L/h...
  22. Berger M, Brock N, Liesegang H, Dogs M, Preuth I, Simon M, et al. Genetic analysis of the upper phenylacetate catabolic pathway in the production of tropodithietic acid by Phaeobacter gallaeciensis. Appl Environ Microbiol. 2012;78:3539-51 pubmed publisher
  23. Prado S, Montes J, Romalde J, Barja J. Inhibitory activity of Phaeobacter strains against aquaculture pathogenic bacteria. Int Microbiol. 2009;12:107-14 pubmed
    ..These strains are promising probiotics for aquaculture facilities. Their potential benefit is based on the capacity to control the proliferation of a variety of aquaculture bacterial pathogens in mollusc larval cultures...
  24. Wagner Dobler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, et al. The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea. ISME J. 2010;4:61-77 pubmed publisher
    ..The long-range (80%) synteny between two sister plasmids provides insights into the emergence of novel plasmids. D. shibae DFL12(T) shows the most complex viral defense system of all Rhodobacterales sequenced to date...
  25. Fukunaga Y, Kurahashi M, Tanaka K, Yanagi K, Yokota A, Harayama S. Pseudovibrio ascidiaceicola sp. nov., isolated from ascidians (sea squirts). Int J Syst Evol Microbiol. 2006;56:343-7 pubmed
    ..nov. is proposed. The type strain is F423T (=NBRC 100514T=IAM 15084T=DSM 16392T=KCTC 12308T)...
  26. Miller T, Belas R. Motility is involved in Silicibacter sp. TM1040 interaction with dinoflagellates. Environ Microbiol. 2006;8:1648-59 pubmed
    ..The growth rate of the dinoflagellates was reduced in the presence of the Fla- mutants compared with Fla+ cells. These results indicate that bacterial motility is important for the Silicibacter sp. TM1040-P. piscicida interaction...
  27. Tait K, Williamson H, Atkinson S, Williams P, Camara M, Joint I. Turnover of quorum sensing signal molecules modulates cross-kingdom signalling. Environ Microbiol. 2009;11:1792-802 pubmed publisher
    ..we show that the intertidal surfaces colonized by Ulva are dominated by Alphaproteobacteria, particularly the Rhodobacteraceae family, and the Bacteroidetes family Flavobacteriaceae, and that this diverse assemblage both produces and ..
  28. Prol M, Bruhn J, Pintado J, Gram L. Real-time PCR detection and quantification of fish probiotic Phaeobacter strain 27-4 and fish pathogenic Vibrio in microalgae, rotifer, Artemia and first feeding turbot (Psetta maxima) larvae. J Appl Microbiol. 2009;106:1292-303 pubmed publisher
    ..To develop a SYBR Green quantitative real-time PCR protocol enabling detection and quantification of a fish probiotic and two turbot pathogenic Vibrio spp. in microcosms...
  29. Ma Q, Zhou J, Zhang W, Meng X, Sun J, Yuan Y. Integrated proteomic and metabolomic analysis of an artificial microbial community for two-step production of vitamin C. PLoS ONE. 2011;6:e26108 pubmed publisher
    ..megaterium provided key elements necessary for K. vulgare to grow better and produce more 2-KGA. The study represents the first attempt to decipher 2-KGA-producing microbial communities using quantitative systems biology analysis...
  30. Yi H, Lim Y, Chun J. Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999. Int J Syst Evol Microbiol. 2007;57:815-9 pubmed
    ..It is therefore proposed that Silicibacter lacuscaerulensis and Silicibacter pomeroyi are transferred to the genus Ruegeria as Ruegeria lacuscaerulensis comb. nov. and Ruegeria pomeroyi comb. nov...
  31. Christie Oleza J, Armengaud J. In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study. Mar Drugs. 2010;8:2223-39 pubmed publisher
    ..The Ruegeria pomeroyi DSS-3 case-study illustrates the power of the shotgun nano-LC-MS/MS strategy to decipher the exoproteome from marine bacteria and to contribute to environmental proteomics...
  32. Schimpl M, Schüttelkopf A, Borodkin V, van Aalten D. Human OGA binds substrates in a conserved peptide recognition groove. Biochem J. 2010;432:1-7 pubmed publisher
  33. Todd J, Curson A, Kirkwood M, Sullivan M, Green R, Johnston A. DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria. Environ Microbiol. 2011;13:427-38 pubmed publisher
    ..Judged by their frequencies in the Global Ocean Sampling metagenomic databases, DddP and DddQ are relatively abundant among marine bacteria compared with the previously identified DddL and DddD enzymes...
  34. Giebel H, Kalhoefer D, Gahl Janssen R, Choo Y, Lee K, Cho J, et al. Planktomarina temperata gen. nov., sp. nov., belonging to the globally distributed RCA cluster of the marine Roseobacter clade, isolated from the German Wadden Sea. Int J Syst Evol Microbiol. 2013;63:4207-17 pubmed publisher
    ..strains belonging to the globally distributed marine RCA (Roseobacter clade-affiliated) cluster (family Rhodobacteraceae, class Alphaproteobacteria) were obtained from coastal seawater samples...
  35. Huang Z, Zou W, Liu J, Liu L. Glutathione enhances 2-keto-l-gulonic acid production based on Ketogulonicigenium vulgare model iWZ663. J Biotechnol. 2013;164:454-60 pubmed publisher
    ..vulgare and B. megaterium increased the 2-KLG productivity by 20.9%. This study shows that the analysis of a specific metabolic module in GSMM can provide a potential strategy for optimizing microbial physiological functions. ..
  36. Liu D, Zhu T, Fan L, Quan J, Guo H, Ni J. Identification of a novel gentisate 1,2-dioxygenase from Silicibacter pomeroyi. Biotechnol Lett. 2007;29:1529-35 pubmed
    ..The K (m) and K (cat)/K (m) for gentisate were 12 muM and 653 x 10(4) M(-1 )s(-1); the pI was 4.6-4.8. It was optimally active at 40 degrees C and pH 8.0. ..
  37. Llamas I, Mata J, Tallon R, Bressollier P, Urdaci M, Quesada E, et al. Characterization of the exopolysaccharide produced by Salipiger mucosus A3, a halophilic species belonging to the Alphaproteobacteria, isolated on the Spanish Mediterranean seaboard. Mar Drugs. 2010;8:2240-51 pubmed publisher
    ..It also has a high capacity for binding cations and incorporating considerable quantities of sulfates, this latter feature being very unusual in bacterial polysaccharides. ..
  38. McDaniel L, Young E, Ritchie K, Paul J. Environmental factors influencing gene transfer agent (GTA) mediated transduction in the subtropical ocean. PLoS ONE. 2012;7:e43506 pubmed publisher
    ..These results indicate that GTA-mediated HGT in the marine environment with the strains examined is favored during times of elevated bacterial and GTA abundance as well as in areas of higher salinity. ..
  39. Jung Y, Yoon J. Jannaschia faecimaris sp. nov., isolated from a tidal flat sediment. Int J Syst Evol Microbiol. 2014;64:945-51 pubmed publisher
    ..nov. is proposed. The type strain is HD-22(T) (?=?KCTC 32179(T)?=?CCUG 63415(T)). ..
  40. Hwang C, Bae G, Yih W, Cho B. Marivita cryptomonadis gen. nov., sp. nov. and Marivita litorea sp. nov., of the family Rhodobacteraceae, isolated from marine habitats. Int J Syst Evol Microbiol. 2009;59:1568-75 pubmed publisher
    ..3-96.7 % similarity), Pelagibaca (95.3-96.0 %) and Donghicola (95.6 %) in the family Rhodobacteraceae. However, the two novel strains did not form a robust clade with any species of the Roseobacter clade, ..
  41. Maloy A, Barber B, Boettcher K. A PCR-based diagnostic assay for the detection of Roseovarius crassostreae in Crassostrea virginica affected by juvenile oyster disease (JOD). Dis Aquat Organ. 2005;67:155-62 pubmed
    ..This assay is expected to advance regional disease management efforts and provide valuable insights into the disease process and epizootiology of JOD. ..
  42. Lee M, Lee S, Jung Y, Park S, Yoon J. Pseudorhodobacter wandonensis sp. nov., isolated from wood falls, and emended description of the genus Pseudorhodobacter. Int J Syst Evol Microbiol. 2013;63:1479-84 pubmed publisher
    ..nov. is proposed. The type strain is WT-MW11(T) (?=?KCTC 23672(T)?=?CCUG 61506(T)). The description of the genus Pseudorhodobacter is emended. ..
  43. Chu J, Arun A, Chen W, Chou J, Shen F, Rekha P, et al. Agaricicola taiwanensis gen. nov., sp. nov., an alphaproteobacterium isolated from the edible mushroom Agaricus blazei. Int J Syst Evol Microbiol. 2010;60:2032-5 pubmed publisher
    ..nov., sp. nov. is proposed. The type strain of Agaricicola taiwanensis is CC-SBABM117(T) (=BCRC 17964(T) =CCM 7684(T)). ..
  44. Jin H, Kim J, Jeon C. Aquamicrobium aestuarii sp. nov., a marine bacterium isolated from a tidal flat. Int J Syst Evol Microbiol. 2013;63:4012-7 pubmed publisher
    ..nov. is proposed. The type strain is G210(T) (?=?KACC 14931(T)?=?JCM 16876(T)). ..
  45. Rosana A, Orata F, Xu Y, Simkus D, Bramucci A, Boucher Y, et al. Draft Genome Sequences of Seven Bacterial Strains Isolated from a Polymicrobial Culture of Coccolith-Bearing (C-Type) Emiliania huxleyi M217. Genome Announc. 2016;4: pubmed publisher
    Strains of Rhodobacteraceae, Sphingomonadales, Alteromonadales, and Bacteroidetes were isolated from a polymicrobial culture of the coccolith-forming (C-type) haptophyte Emiliania huxleyi strain M217...
  46. Yoon J, Kim S, Park S, Choi H. Characterization of Marinovum faecis sp. nov., an alphaproteobacterium isolated from marine sediment. Antonie Van Leeuwenhoek. 2017;110:963-969 pubmed publisher
    ..analysis based on the 16S rRNA gene sequence indicated that the novel marine strain belongs to the family Rhodobacteraceae of the class Alphaproteobacteria, with high sequence similarity (98.4%) to Marinovum algicola FF3T...
  47. Rodrigo Torres L, Pujalte M, Arahal D. Draft genome sequence of Shimia marina CECT 7688(T). Mar Genomics. 2016;28:83-86 pubmed publisher
    Shimia marina is a member of the family Rhodobacteraceae described in 2006. Strain CL-TA03(T) (=CECT 7688(T)) was isolated from a biofilm formed on an acrylic slide submerged in surface water in a coastal fish farm in Tongyeong, Korea...
  48. Liu J, Zhang P, Li H, Tian Y, Wang S, Song Y, et al. Denitrification of landfill leachate under different hydraulic retention time in a two-stage anoxic/oxic combined membrane bioreactor process: Performances and bacterial community. Bioresour Technol. 2018;250:110-116 pubmed publisher
    ..76-35.11% totally. The other communities, including Nitrobacter, Planctomyces, Rhodobacteraceae and Nitrospirae, were also developed for organic degradation and denitrification.
  49. Macián M, Arahal D, Garay E, Ludwig W, Schleifer K, Pujalte M. Jannaschia rubra sp. nov., a red-pigmented bacterium isolated from sea water. Int J Syst Evol Microbiol. 2005;55:649-53 pubmed
    ..6 mol% G+C. Morphological, physiological and genotypic differences from related species support the description of a novel species, Jannaschia rubra sp. nov., with strain 4SM3(T) (=CECT 5088(T)=DSM 16279(T)) as the type strain. ..
  50. Dogs M, Wemheuer B, Wolter L, Bergen N, Daniel R, Simon M, et al. Rhodobacteraceae on the marine brown alga Fucus spiralis are abundant and show physiological adaptation to an epiphytic lifestyle. Syst Appl Microbiol. 2017;40:370-382 pubmed publisher
    ..b>Rhodobacteraceae (Alphaproteobacteria) were the predominant family constituting 23% of the epibacterial community...
  51. Wang Y, Zhang J, Zhou J, Wang J. [Isolation and identification of a 4-aminobenzenesulphonate biodegrading strain and its degradation characteristics]. Huan Jing Ke Xue. 2009;30:1193-8 pubmed
    ..The 84.4% TOC removal was achieved after 94.7% consumption of 4-ABS, and no aromatic intermediates were detected, referring the complete mineralization of 4-ABS by strain W1. ..
  52. Huo Y, Xu X, Li X, Liu C, Cui H, Wang C, et al. Ruegeria marina sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol. 2011;61:347-50 pubmed publisher
    ..7?%. On the basis of phenotypic and genotypic data, strain ZH17(T) represents a novel species of the genus Ruegeria, for which the name Ruegeria marina sp. nov. (type strain ZH17(T) =CGMCC 1.9108(T) =JCM 16262(T)) is proposed. ..
  53. Li G, Zhang X, Wang C, Zhang Y, Xu X, Liu C, et al. Albimonas pacifica sp. nov., isolated from seawater of the Pacific, and emended description of the genus Albimonas. Int J Syst Evol Microbiol. 2013;63:3597-601 pubmed publisher
    ..nov. is proposed. The type strain of Albimonas pacifica is P-50-3(T) (?=?KACC 16527(T)?=?CGMCC 1.11030(T)). An emended description of the genus Albimonas Lim et al. 2008 is also proposed. ..
  54. Strompl C, Hold G, Lünsdorf H, Graham J, Gallacher S, Abraham W, et al. Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech. Int J Syst Evol Microbiol. 2003;53:1901-6 pubmed
    ..The five strains are proposed to comprise a new species of a new genus, Oceanicaulis alexandrii gen. nov., sp. nov., the type strain of which is C116-18(T) (=DSM 11625(T)=NCIMB 13905(T))...
  55. Shin Y, Kim J, Suckhoom A, Kantachote D, Kim W. Limibaculum halophilum gen. nov., sp. nov., a new member of the family Rhodobacteraceae. Int J Syst Evol Microbiol. 2017;67:3812-3818 pubmed publisher
    ..rRNA gene sequence revealed that strain CAU 1123T formed a monophyletic lineage within the family Rhodobacteraceae with 93...
  56. Ninawe A, Selvin J. Probiotics in shrimp aquaculture: avenues and challenges. Crit Rev Microbiol. 2009;35:43-66 pubmed publisher
    ..The present review highlights the potential sources of probiotics, mechanism of action, diversity of probiotic microbes and challenges of probiotic usage in shrimp aquaculture...
  57. Patzelt D, Wang H, Buchholz I, Rohde M, Gröbe L, Pradella S, et al. You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae. ISME J. 2013;7:2274-86 pubmed publisher
    ..A specific response towards non-native AHLs might provide D. shibae with the capacity for complex interspecies communication...
  58. Wang B, Sun F, Lai Q, Du Y, Liu X, Li G, et al. Roseovarius nanhaiticus sp. nov., a member of the Roseobacter clade isolated from marine sediment. Int J Syst Evol Microbiol. 2010;60:1289-95 pubmed publisher
    ..nov. is proposed. The type strain is NH52J(T) (=LMG 24840(T)=CCTCC AB 208317(T)=MCCC 1A03543(T))...
  59. Farias M, Rascovan N, Toneatti D, Albarracín V, Flores M, Poiré D, et al. The discovery of stromatolites developing at 3570 m above sea level in a high-altitude volcanic lake Socompa, Argentinean Andes. PLoS ONE. 2013;8:e53497 pubmed publisher
    ..an atypical microbial community characterized by highly abundant representatives of Deinococcus-Thermus, Rhodobacteraceae, Desulfobacterales and Spirochaetes...
  60. Kampfer P, Arun A, Rekha P, Busse H, Young C, Glaeser S. Ruegeria intermedia sp. nov., a moderately thermophilic bacterium isolated from a coastal hot spring. Int J Syst Evol Microbiol. 2013;63:2538-44 pubmed publisher
    ..Robust tree topology for the genus Ruegeria including the new strain was only obtained by including all Rhodobacteraceae type strains but not if the analysis was limited to few selected taxa...
  61. Zielazinski E, Cutsail G, Hoffman B, Stemmler T, Rosenzweig A. Characterization of a cobalt-specific P(1B)-ATPase. Biochemistry. 2012;51:7891-900 pubmed publisher
    ..These data represent the first in vitro characterization of a P(1B-4)-ATPase and its Co(2+) binding site...
  62. Bandyopadhyay S, Schumann P, Das S. Pannonibacter indica sp. nov., a highly arsenate-tolerant bacterium isolated from a hot spring in India. Arch Microbiol. 2013;195:1-8 pubmed publisher
    ..nov. is proposed. The type strain is HT23(T) (=JCM 16851(T) = DSM 23407(T) = LMG 25769(T))...
  63. Yoon J, Jung Y, Lee J. Loktanella litorea sp. nov., isolated from seawater. Int J Syst Evol Microbiol. 2013;63:175-80 pubmed publisher
    ..nov. is proposed. The type strain is DPG-5(T) (= KCTC 23883(T) = CCUG 62113(T))...
  64. Lucena T, Ruvira M, Macián M, Pujalte M, Arahal D. Description of Tropicibacter mediterraneus sp. nov. and Tropicibacter litoreus sp. nov. Syst Appl Microbiol. 2013;36:325-9 pubmed publisher
    ..in a polyphasic study and were placed phylogenetically within the Roseobacter clade in the family Rhodobacteraceae. Highest 16S rRNA sequence similarities of the five strains to the types of any established species ..
  65. Gaboyer F, Tindall B, Ciobanu M, Duthoit F, Le Romancer M, Alain K. Phaeobacter leonis sp. nov., an alphaproteobacterium from Mediterranean Sea sediments. Int J Syst Evol Microbiol. 2013;63:3301-6 pubmed publisher
    ..Strain 306(T) therefore represents a novel species, for which the name Phaeobacter leonis sp. nov. is proposed. The type strain is 306(T) (?=DSM 25627(T)?=CIP 110369(T)?=UBOCC 3187(T))...
  66. Liu J, Zhang X, Chi F, Pan J, Sun C, Wu M. Gemmobacter megaterium sp. nov., isolated from coastal planktonic seaweeds. Int J Syst Evol Microbiol. 2014;64:66-71 pubmed publisher
    ..11024(T)?=?JCM 18498(T)) is considered to represent a novel species of the genus Gemmobacter, for which the name Gemmobacter megaterium sp. nov. is proposed. ..
  67. Neumann A, Patzelt D, Wagner Dobler I, Schulz S. Identification of new N-acylhomoserine lactone signalling compounds of Dinoroseobacter shibae DFL-12(T) by overexpression of luxI genes. Chembiochem. 2013;14:2355-61 pubmed publisher
    ..AHL 6 has not been reported before from other organisms and contains an unusual 2E double bond. ..
  68. Yang J, Kang I, Moon M, Ryu U, Kwon K, Cho J, et al. Complete genome sequence of Celeribacter marinus IMCC12053(T), the host strain of marine bacteriophage P12053L. Mar Genomics. 2016;26:5-7 pubmed publisher
    ..Comparative genomics with other Celeribacter genomes were carried out for polyaromatic hydrocarbon degradation, but there were no aromatic ring oxygenases in IMCC12053 when compared to Celeribacter indicus P73. ..
  69. Suzuki T, Mori Y, Nishimura Y. Roseibacterium elongatum gen. nov., sp. nov., an aerobic, bacteriochlorophyll-containing bacterium isolated from the west coast of Australia. Int J Syst Evol Microbiol. 2006;56:417-21 pubmed
    ..4%. It is concluded that strain OCh 323T (=JCM 11220T=CIP 107377T) should be placed in a novel genus, Roseibacterium gen. nov., as the type strain of a novel species Roseibacterium elongatum sp. nov...
  70. Wagner Dobler I, Rheims H, Felske A, El Ghezal A, Flade Schröder D, Laatsch H, et al. Oceanibulbus indolifex gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bioactive metabolites. Int J Syst Evol Microbiol. 2004;54:1177-84 pubmed
    ..Phylogenetic analysis of 16S rRNA gene sequences and chemotaxonomic data support the description of a new genus and species, to include Oceanibulbus indolifex gen. nov., sp. nov., with the type strain HEL-45T (=DSM 14862T=NCIMB 13983T)...
  71. Lai Q, Zhong H, Wang J, Yuan J, Sun F, Wang L, et al. Roseovarius indicus sp. nov., isolated from deep-sea water of the Indian Ocean. Int J Syst Evol Microbiol. 2011;61:2040-4 pubmed publisher
    ..nov. is proposed. The type strain is B108(T) (?=?2PR52-14(T) ?=?CCTCC AB 208233(T) ?=?LMG 24622(T) ?=?MCCC 1A01227(T))...
  72. Liu Y, Lai Q, Shao Z. Proposal for transfer of Oceanibulbus indolifex Wagner-Döbler et al. 2004 to the genus Sulfitobacter as Sulfitobacter indolifex comb. nov. Int J Syst Evol Microbiol. 2017;67:2328-2331 pubmed publisher
    ..nov.; the type strain is HEL-45T (=MCCC 1A11773T=DSM 14862T=NCIMB 13983T)...
  73. Lai P, Miao L, Lee O, Liu L, Zhou X, Xu Y, et al. Profundibacterium mesophilum gen. nov., sp. nov., a novel member in the family Rhodobacteraceae isolated from deep-sea sediment in the Red Sea, Saudi Arabia. Int J Syst Evol Microbiol. 2013;63:1007-12 pubmed publisher
    ..Phylogenetic analysis of 16S rRNA gene sequences revealed that the novel strain belonged to the family Rhodobacteraceae of the class Alphaproteobacteria but formed a distinct evolutionary lineage from other bacterial species with ..