cytophaga

Summary

Summary: A genus of gram-negative gliding bacteria found in SOIL; HUMUS; and FRESHWATER and marine habitats.

Top Publications

  1. Barbeyron T, L Haridon S, Corre E, Kloareg B, Potin P. Zobellia galactanovorans gen. nov., sp. nov., a marine species of Flavobacteriaceae isolated from a red alga, and classification of [Cytophaga] uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Zobellia uliginosa gen. nov., comb. nov. Int J Syst Evol Microbiol. 2001;51:985-97 pubmed
    ..Phylogenetic analysis of 16S rRNA gene sequences indicated that strain DsijT is closely related to [Cytophaga] uliginosa DSM 2061T...
  2. Griffiths E, Gupta R. The use of signature sequences in different proteins to determine the relative branching order of bacterial divisions: evidence that Fibrobacter diverged at a similar time to Chlamydia and the Cytophaga-Flavobacterium-Bacteroides division. Microbiology. 2001;147:2611-22 pubmed publisher
    ..present in all proteobacterial homologues as well as in homologues from species belonging to the Chlamydia and Cytophaga-Flavobacterium- Bacteroides (CFB) groups, but it is not found in homologues from any other groups of bacteria...
  3. Jeang C, Chen L, Chen M, Shiau R. Cloning of a gene encoding raw-starch-digesting amylase from a Cytophaga sp. and its expression in Escherichia coli. Appl Environ Microbiol. 2002;68:3651-4 pubmed
    A raw-starch-digesting amylase (RSDA) gene from a Cytophaga sp. was cloned and sequenced. The predicted protein product contained 519 amino acids and had high amino acid identity to alpha-amylases from three Bacillus species...
  4. Yamanaka Y, Kazuoka T, Yoshida M, Yamanaka K, Oikawa T, Soda K. Thermostable aldehyde dehydrogenase from psychrophile, Cytophaga sp. KUC-1: enzymological characteristics and functional properties. Biochem Biophys Res Commun. 2002;298:632-7 pubmed
    ..2.1.5) in the cells of a psychrophile from Antarctic seawater, Cytophaga sp. KUC-1, and purified to homogeneity...
  5. Cottrell M, Yu L, Kirchman D. Sequence and expression analyses of Cytophaga-like hydrolases in a Western arctic metagenomic library and the Sargasso Sea. Appl Environ Microbiol. 2005;71:8506-13 pubmed
    ..In this study we used the Sargasso Sea Whole Genome Sequence (WGS) data set to search for hydrolases used by Cytophaga-like bacteria to degrade biopolymers such as polysaccharides and proteins...
  6. Kampfer P, Young C, Sridhar K, Arun A, Lai W, Shen F, et al. Transfer of [Flexibacter] sancti, [Flexibacter] filiformis, [Flexibacter] japonensis and [Cytophaga] arvensicola to the genus Chitinophaga and description of Chitinophaga skermanii sp. nov. Int J Syst Evol Microbiol. 2006;56:2223-8 pubmed
    ..In addition, [Cytophaga] arvensicola and species of the genus Terrimonas also clustered into this phylogenetic group...
  7. Zhu Y, Li H, Zhou H, Chen G, Liu W. Cellulose and cellodextrin utilization by the cellulolytic bacterium Cytophaga hutchisonii. Bioresour Technol. 2010;101:6432-7 pubmed publisher
    b>Cytophaga hutchinsonii is an abundant aerobic cellulolytic soil bacterium utilizing very few substrates as sole carbon and energy sources. In this study, growth of C...
  8. Yang S, Seo H, Woo J, Oh H, Jang H, Lee J, et al. Carboxylicivirga gen. nov. in the family Marinilabiliaceae with two novel species, Carboxylicivirga mesophila sp. nov. and Carboxylicivirga taeanensis sp. nov., and reclassification of Cytophaga fermentans as Saccharicrinis fermentans gen. nov., comb. Int J Syst Evol Microbiol. 2014;64:1351-8 pubmed publisher
    ..2?% 16S rRNA gene sequence similarity with [Cytophaga] fermentans DSM 9555(T). 16S rRNA gene sequence similarity between the two new isolates was 97...
  9. Gilmore D, Godchaux W, Leadbetter E. Cysteine is not an obligatory intermediate in the biosynthesis of cysteate by Cytophaga johnsonae. Biochem Biophys Res Commun. 1989;160:535-9 pubmed
    A cysteine auxotroph of Cytophaga johnsonae was able to incorporate sulfur from sulfate into cysteate, and thus into sulfonolipid, in the absence of cysteine synthesis...

More Information

Publications120 found, 100 shown here

  1. Manz W, Amann R, Ludwig W, Vancanneyt M, Schleifer K. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology. 1996;142 ( Pt 5):1097-106 pubmed
    We designed a panel of four 16S rRNA-targeted oligonucleotide probes specific for bacteria of the phylum cytophaga-flavobacter-bacteroides (CFB)...
  2. Elsaied H, Sato M, Naganuma T. Viable cytophaga-like bacterium in the 0.2 microm-filtrate seawater. Syst Appl Microbiol. 2001;24:618-22 pubmed
    A strain of the Cytophaga-like bacterium (CLB), Nano-1, was isolated from the 0.2 microm-filtrate of natural seawater...
  3. Shaaban M, Maskey R, Wagner Dobler I, Laatsch H. Pharacine, a natural p-cyclophane and other indole derivatives from Cytophaga sp. strain AM13.1. J Nat Prod. 2002;65:1660-3 pubmed
    From the ethyl acetate extract of the bacterial strain Cytophaga sp. AM13...
  4. Weeks A, Stouthamer R. Increased fecundity associated with infection by a cytophaga-like intracellular bacterium in the predatory mite, Metaseiulus occidentalis. Proc Biol Sci. 2004;271 Suppl 4:S193-5 pubmed
    ..Recently, another endosymbiotic bacterium from the Cytophaga-Flavobacterium-Bacteroides phylum has been shown to be widespread among arthropods and manipulate its hosts' ..
  5. McBride M, Baker S. Development of techniques to genetically manipulate members of the genera Cytophaga, Flavobacterium, Flexibacter, and Sporocytophaga. Appl Environ Microbiol. 1996;62:3017-22 pubmed
    The Bacteroides-Cytophaga-Flavobacterium branch of the eubacterial phylogenetic tree contains a diverse group of bacterial species. Techniques for the genetic manipulation of Bacteroides spp. are well developed (A. A. Salyers, N. B...
  6. Kirchman D, Yu L, Cottrell M. Diversity and abundance of uncultured cytophaga-like bacteria in the Delaware estuary. Appl Environ Microbiol. 2003;69:6587-96 pubmed
    The Cytophaga-Flavobacterium group is known to be abundant in aquatic ecosystems and to have a potentially unique role in the utilization of organic material...
  7. Dickschat J, Helmke E, Schulz S. Volatile organic compounds from arctic bacteria of the Cytophaga-Flavobacterium-Bacteroides group: a retrobiosynthetic approach in chemotaxonomic investigations. Chem Biodivers. 2005;2:318-53 pubmed
    Volatile organic compounds emitted by different marine arctic strains of the Cytophaga-Flavobacterium-Bacteroides group were investigated by using a modified closed-loop stripping apparatus (CLSA)...
  8. Xie G, Bruce D, Challacombe J, Chertkov O, Detter J, Gilna P, et al. Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsonii. Appl Environ Microbiol. 2007;73:3536-46 pubmed
    The complete DNA sequence of the aerobic cellulolytic soil bacterium Cytophaga hutchinsonii, which belongs to the phylum Bacteroidetes, is presented. The genome consists of a single, circular, 4...
  9. Xu Y, Ji X, Chen N, Li P, Liu W, Lu X. Development of replicative oriC plasmids and their versatile use in genetic manipulation of Cytophaga hutchinsonii. Appl Microbiol Biotechnol. 2012;93:697-705 pubmed publisher
    b>Cytophaga hutchinsonii is a Gram-negative aerobic soil bacterium which can digest crystalline cellulose completely through a strategy different from that of the well-studied cellulolytic aerobic fungi and anaerobic bacteria...
  10. O Sullivan L, Weightman A, Fry J. New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. Appl Environ Microbiol. 2002;68:201-10 pubmed
    ..6% of the bacterial populations not accounted for by these clones. Members of the Cytophaga-Flexibacter-Bacteroides division (CFBs) were most abundant in the library, representing 25% of clones, followed ..
  11. Barbieri E, Riccioni G, Pisano A, Sisti D, Zeppa S, Agostini D, et al. Competitive PCR for quantitation of a Cytophaga-Flexibacter-Bacteroides phylum bacterium associated with the Tuber borchii Vittad. mycelium. Appl Environ Microbiol. 2002;68:6421-4 pubmed
    ..was identified as a novel member of the Cytophaga-Flexibacter-Bacteroides group...
  12. Brettar I, Christen R, Höfle M. Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga-Flavobacterium-Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol. 2004;54:65-70 pubmed
    ..To honour the late aquatic microbiologist Russell T. Bell, the name Belliella baltica gen. nov, sp. nov. is suggested for the Baltic Sea isolates, for which the type strain is BA134T (=DSM 15883T=LMG 21964T=CIP 108006T)...
  13. McBride M. Cytophaga-flavobacterium gliding motility. J Mol Microbiol Biotechnol. 2004;7:63-71 pubmed
    Flavobacterium johnsoniae, like many other members of the Cytophaga-Flavobacterium-Bacteroides group, displays rapid gliding motility. Cells of F. johnsoniae glide over surfaces at rates of up to 10 microm/s. Latex spheres added to F...
  14. Peterson S, Dunn A, Klimowicz A, Handelsman J. Peptidoglycan from Bacillus cereus mediates commensalism with rhizosphere bacteria from the Cytophaga-Flavobacterium group. Appl Environ Microbiol. 2006;72:5421-7 pubmed
    ..revealed that the introduction of Bacillus cereus UW85 can increase the populations of bacteria from the Cytophaga-Flavobacterium (CF) group of the Bacteroidetes phylum in the soybean rhizosphere, suggesting that these ..
  15. Avonce N, Wuyts J, Verschooten K, Vandesteene L, Van Dijck P. The Cytophaga hutchinsonii ChTPSP: First characterized bifunctional TPS-TPP protein as putative ancestor of all eukaryotic trehalose biosynthesis proteins. Mol Biol Evol. 2010;27:359-69 pubmed publisher
    ..complementation assays, the existence of a natural TPS-TPP bifunctional enzyme found in the bacterial species Cytophaga hutchinsonii...
  16. Hirsch P, Ludwig W, Hethke C, Sittig M, Hoffmann B, Gallikowski C. Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antartica soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent. Syst Appl Microbiol. 1998;21:374-383 pubmed
    ..strains AA-688 and AA-718 showed these to be identical and to represent a special phylogenetic group within the Cytophaga/Flavobacterium/Bacteroides major line of descent...
  17. Bowman J. Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol. 2000;50 Pt 5:1861-8 pubmed
    ..nov. (type strain IC166T = ACAM 630T). In addition, it was recognized that the species Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989, a species phylogenetically remote from the type species of ..
  18. Hamana K, Nakagawa Y. Polyamine distribution profiles in the eighteen genera phylogenetically located within the Flavobacterium-Flexibacter-Cytophaga complex. Microbios. 2001;106:7-17 pubmed
    Cellular polyamines of eighteen genera belonging to the Flavobacterium-Flexibacter-Cytophaga complex were analysed by ion exchange liquid chromatography...
  19. Suzuki M, Nakagawa Y, Harayama S, Yamamoto S. Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. an. Int J Syst Evol Microbiol. 2001;51:1639-52 pubmed
    ..The phylogenetic relationships of these isolates among marine species of the Cytophaga-Flavobacterium-Bacteroides complex were analysed by using their gyrB nucleotide sequences and translated peptide ..
  20. Morimoto S, Kurtti T, Noda H. In vitro cultivation and antibiotic susceptibility of a Cytophaga-like intracellular symbiote isolated from the tick Ixodes scapularis. Curr Microbiol. 2006;52:324-9 pubmed
    A Cytophaga-like organism (CLO), isolated from the tick Ixodes scapularis (IsCLO), was adapted to growth in insect cell lines and its antibiotic sensitivity was tested...
  21. Brooks S, McAllister M, Sandoz M, Kalmokoff M. Culture-independent phylogenetic analysis of the faecal flora of the rat. Can J Microbiol. 2003;49:589-601 pubmed
    ..aligned with previously cultured species, the remainder fell into a separate lineage within the Bacteroides-Cytophaga phylum...
  22. Olapade O. Diel fluctuations in the abundance and community diversity of coastal bacterioplankton assemblages over a tidal cycle. Microb Ecol. 2012;63:96-102 pubmed publisher
    ..FISH analyses revealed the quantitative predominance of bacterial members belonging to the Cytophaga-Flavobacterium cluster as well as two Proteobacteria (?- and ?-) subclasses within the bacterioplankton ..
  23. Zheng Q, Wang Y, Xie R, Lang A, Liu Y, Lu J, et al. Dynamics of Heterotrophic Bacterial Assemblages within Synechococcus Cultures. Appl Environ Microbiol. 2018;84: pubmed publisher
    ..bacteria were detected in the liquid cultures of each Synechococcus isolate, comprising members of the Cytophaga-Flavobacteria-Bacteroides (CFB) group (mainly from Flavobacteriales and Cytophagales<..
  24. Mojica K, Elsey D, Cooney M. Quantitative analysis of biofilm EPS uronic acid content. J Microbiol Methods. 2007;71:61-5 pubmed
    ..b>Cytophaga lytica, a marine bacterium isolated from a naturally occurring biofilm, was used to form single-species biofilms ..
  25. Hahn M, Moore E, Höfle M. Bacterial filament formation, a defense mechanism against flagellate grazing, is growth rate controlled in bacteria of different phyla. Appl Environ Microbiol. 1999;65:25-35 pubmed
    ..strain MWH38 (a member of the Cytophaga-Flavobacterium-Bacteroides phylum) by comparative 16S rRNA gene sequence analysis...
  26. Ainsworth T, Kramasky Winter E, Loya Y, Hoegh Guldberg O, Fine M. Coral disease diagnostics: what's between a plague and a band?. Appl Environ Microbiol. 2007;73:981-92 pubmed
    ..The pathology of coral disease as a whole requires further investigation. This study emphasizes the importance of going beyond the external macroscopic signs of coral disease for accurate disease diagnosis. ..
  27. Pankratov T, Dedysh S, Zavarzin G. The leading role of actinobacteria in aerobic cellulose degradation in Sphagnum peat bogs. Dokl Biol Sci. 2006;410:428-30 pubmed
  28. Wang C, Meek D, Panchal P, Boruvka N, Archibald F, Driscoll B, et al. Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants. Appl Environ Microbiol. 2006;72:384-91 pubmed
    ..In some cases, the amino acid sequence identity between pairs of deduced BdhA proteins was <35%, a level at which detection by nucleic acid hybridization based methods would probably not be successful. ..
  29. Wang H, Tao Y, Gao D, Liu G, Chen C, Ren N, et al. Microbial population dynamics in response to increasing loadings of pre-hydrolyzed pig manure in an expanded granular sludge bed. Water Res. 2015;87:29-37 pubmed publisher
    ..Four bacterial genera (Clostridium, Cytophaga, Bacillus and Bacteroides) and two methanogenic genera (Methanosaeta and Methanobacterium) dominated the ..
  30. Handschuh H, O Dwyer J, Adley C. Bacteria that Travel: The Quality of Aircraft Water. Int J Environ Res Public Health. 2015;12:13938-55 pubmed publisher
    ..Proteobacteria; α-Proteobacteria; Bacilli; Actinobacteria; Flavobacteria; Sphingobacteria and Cytophaga; using phenotypic and 16S rDNA sequence-based analysis...
  31. Hayashi H, Sakamoto M, Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol. 2002;46:535-48 pubmed
    ..Moreover, several previously uncharacterized and uncultured microorganisms were recognized in clone libraries and colonies. Our results also showed marked individual differences in the composition of intestinal microbiota. ..
  32. Makridis P, Martins S, Vercauteren T, Van Driessche K, Decamp O, Dinis M. Evaluation of candidate probiotic strains for gilthead sea bream larvae (Sparus aurata) using an in vivo approach. Lett Appl Microbiol. 2005;40:274-7 pubmed
    ..live food cultures were identified by sequencing fragments of their 16s rDNA genome to the genus level as Cytophaga sp., Roseobacter sp., Ruergeria sp., Paracoccus sp., Aeromonas sp. and Shewanella sp...
  33. Hölzl G, Sohlenkamp C, Vences Guzmán M, Gisch N. Headgroup hydroxylation by OlsE occurs at the C4 position of ornithine lipid and is widespread in proteobacteria and bacteroidetes. Chem Phys Lipids. 2018;213:32-38 pubmed publisher
    ..hydroxylase allows us to predict that OL headgroup hydroxylation is not restricted to a few ?-proteobacteria, but is apparently also common in many genera belonging to the Cytophaga-Flavobacterium-Bacteroidetes (CFB) group of bacteria.
  34. Li Z, Zhang C, Wang S, Cao J, Zhang W, Lu X. A new locus in Cytophaga hutchinsonii involved in colony spreading on agar surfaces and individual cell gliding. FEMS Microbiol Lett. 2015;362: pubmed publisher
    b>Cytophaga hutchinsonii glides rapidly over surfaces by an unknown mechanism without flagella and type IV pili and it can degrade crystalline cellulose efficiently by a novel mechanism...
  35. Styp von Rekowski K, Hempel M, Philipp B. Quorum sensing by N-acylhomoserine lactones is not required for Aeromonas hydrophila during growth with organic particles in lake water microcosms. Arch Microbiol. 2008;189:475-82 pubmed
    ..In co-cultures with a competitor bacterium belonging to the Cytophaga-Flavobacterium group, growth of both A...
  36. Zhu Y, Han L, Hefferon K, Silvaggi N, Wilson D, McBride M. Periplasmic Cytophaga hutchinsonii Endoglucanases Are Required for Use of Crystalline Cellulose as the Sole Source of Carbon and Energy. Appl Environ Microbiol. 2016;82:4835-4845 pubmed publisher
    The soil bacterium Cytophaga hutchinsonii actively digests crystalline cellulose by a poorly understood mechanism. Genome analyses identified nine genes predicted to encode endoglucanases with roles in this process...
  37. Hunnicutt D, Kempf M, McBride M. Mutations in Flavobacterium johnsoniae gldF and gldG disrupt gliding motility and interfere with membrane localization of GldA. J Bacteriol. 2002;184:2370-8 pubmed
    ..is not closely linked to gldFG, but the gldA, gldF, and gldG homologs of the distantly related gliding bacterium Cytophaga hutchinsonii are arranged in what appears to be an operon. The exact roles of F...
  38. Kampfer P, Dreyer U, Neef A, Dott W, Busse H. Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol. 2003;53:93-7 pubmed
    ..nov. is proposed; the type strain is B2T (=DSM 14219T =CIP 107207T). ..
  39. Sfanos K, Harmody D, Dang P, Ledger A, Pomponi S, McCarthy P, et al. A molecular systematic survey of cultured microbial associates of deep-water marine invertebrates. Syst Appl Microbiol. 2005;28:242-64 pubmed
    ..HBMMCC contains 224 different phylotypes from six major bacterial clades (Proteobacteria (Alpha, Beta, Gamma), Cytophaga, Flavobacteria, and Bacteroides (CFB), Gram + high GC content, Gram + low GC content)...
  40. Ouverney C, Fuhrman J. Combined microautoradiography-16S rRNA probe technique for determination of radioisotope uptake by specific microbial cell types in situ. Appl Environ Microbiol. 1999;65:1746-52 pubmed
    ..in situ uptake by members of the alpha subdivision of the class Proteobacteria (alpha-Proteobacteria) and of the Cytophaga-Flavobacterium group obtained off the California coast and labeled with fluorescent oligonucleotide probes for ..
  41. Toncheva Panova T, Donchev A, Dimitrov M, Ivanova J. Extra- and intra-cellular lytic effects of Cytophaga sp. LR2 on the red microalgae Rhodella reticulata. J Appl Microbiol. 2002;93:751-7 pubmed
    To evaluate the lytic activities of crude enzymes from Cytophaga sp. LR2 on Rhodella reticulata cells and isolated algal polysaccharide...
  42. Lu X, Lu P. Response of microbial communities to pesticide residues in soil restored with Azolla imbricata. Appl Microbiol Biotechnol. 2018;102:475-484 pubmed publisher
    ..Thioalkalispira, Desulfobulbus, Polycyclovorans, Fluviicola, Deferrisoma, Erysipelothrix, Desulfovibrio, Cytophaga, Vogesella, Zoogloea, Azovibrio, Halomonas, Paludibacter, Crocinitomix, Haliscomenobacter, Hirschia, Silanimonas,..
  43. Phillips R, Anderson A, Gentry H, Güner O, Bowen J. Substrate and inhibitor specificity of kynurenine monooxygenase from Cytophaga hutchinsonii. Bioorg Med Chem Lett. 2017;27:1705-1708 pubmed publisher
    ..We have evaluated substituted kynurenines as substrates or inhibitors of KMO from Cytophaga hutchinsonii...
  44. Johansen J, Binnerup S, Lejbølle K, Mascher F, Sørensen J, Keel C. Impact of biocontrol strain Pseudomonas fluorescens CHA0 on rhizosphere bacteria isolated from barley (Hordeum vulgare L.) with special reference to Cytophaga-like bacteria. J Appl Microbiol. 2002;93:1065-74 pubmed
    ..bacteria using an agar plate inhibition assay and a plant microcosm, focusing on a CHA0-sensitive member of the Cytophaga-like bacteria (CLB)...
  45. Louime C, Abazinge M, Johnson E, Latinwo L, Ikediobi C, Clark A. Molecular cloning and biochemical characterization of a family-9 endoglucanase with an unusual structure from the gliding bacteria Cytophaga hutchinsonii. Appl Biochem Biotechnol. 2007;141:127-38 pubmed
    b>Cytophaga hutchinsonii was originally isolated from sugarcane piles. This microorganism therefore probably produces an array of enzymes allowing it to digest cellulosic substrates. C...
  46. Olapade O. Community Composition and Diversity of Coastal Bacterioplankton Assemblages in Lakes Michigan, Erie, and Huron. Microb Ecol. 2018;75:598-608 pubmed publisher
    ..in situ hybridization also showed the numerical dominance of members of the Gammaproteobacteria and the Cytophaga-Flavobacterium in the six lake sites examined...
  47. Ross N, Villemur R, Deschenes L, Samson R. Clogging of a limestone fracture by stimulating groundwater microbes. Water Res. 2001;35:2029-37 pubmed
    ..of representative clones from 16S rRNA genes isolated from groundwater, showed significant affiliation with Cytophaga spp., Arcobacter spp. and Rhizobium spp...
  48. Miller A, Richardson L. A meta-analysis of 16S rRNA gene clone libraries from the polymicrobial black band disease of corals. FEMS Microbiol Ecol. 2011;75:231-41 pubmed publisher
    ..One OTU (cyanobacterial) was present in 62 (71%) samples, and three (one Cytophaga-Flavobacter-Bacteriodetes and two alphaproteobacterial) were present in 11 (13%) of the samples...
  49. Zhu Y, McBride M. The unusual cellulose utilization system of the aerobic soil bacterium Cytophaga hutchinsonii. Appl Microbiol Biotechnol. 2017;101:7113-7127 pubmed publisher
    ..The gliding soil bacterium Cytophaga hutchinsonii exhibits a more 'selfish' strategy...
  50. Battin T, Wille A, Sattler B, Psenner R. Phylogenetic and functional heterogeneity of sediment biofilms along environmental gradients in a glacial stream. Appl Environ Microbiol. 2001;67:799-807 pubmed
    ..5 to 7.9. Bacteria of the Cytophaga-Flavobacterium group were also sixfold to eightfold more abundant in the storm aftermath...
  51. Freyth K, Janowitz T, Nunes F, Voss M, Heinick A, Bertaux J, et al. Reproductive fitness and dietary choice behavior of the genetic model organism Caenorhabditis elegans under semi-natural conditions. Mol Cells. 2010;30:347-53 pubmed publisher
    ..elegans for Cytophaga-Flexibacter-Bacteroides, Firmicutes, and β-Proteobacteria, but a low preference for γ-Proteobacteria...
  52. Alsufyani T, Weiss A, Wichard T. Time Course Exo-Metabolomic Profiling in the Green Marine Macroalga Ulva (Chlorophyta) for Identification of Growth Phase-Dependent Biomarkers. Mar Drugs. 2017;15: pubmed publisher
    ..strain MS6 (formerly identified as Roseobacter sp. strain MS2 and Cytophaga sp. strain MS6). Without this accompanying microbial flora, U...
  53. Marques A, Dinh T, Ioakeimidis C, Huys G, Swings J, Verstraete W, et al. Effects of bacteria on Artemia franciscana cultured in different gnotobiotic environments. Appl Environ Microbiol. 2005;71:4307-17 pubmed
    ..Some probiotic bacteria, such as GR 8 (Cytophaga spp...
  54. Alonso C, Pernthaler J. Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters. Environ Microbiol. 2006;8:2022-30 pubmed
    ..1-100 nM) by bacteria related to Roseobacter, SAR11, Gammaproteobacteria and Cytophaga-Flavobacteria in coastal North Sea waters in late winter and during a spring phytoplankton bloom dominated by ..
  55. Zhang C, Wang X, Zhang W, Zhao Y, Lu X. Expression and characterization of a glucose-tolerant ?-1,4-glucosidase with wide substrate specificity from Cytophaga hutchinsonii. Appl Microbiol Biotechnol. 2017;101:1919-1926 pubmed publisher
    b>Cytophaga hutchinsonii is a gram-negative bacterium that can efficiently degrade crystalline cellulose by a novel strategy without cell-free cellulases or cellulosomes. Genomic analysis implied that C...
  56. Anton J, Rossello Mora R, Rodriguez Valera F, Amann R. Extremely halophilic bacteria in crystallizer ponds from solar salterns. Appl Environ Microbiol. 2000;66:3052-7 pubmed
    ..study, these Bacteria constituted from 5 to 25% of the total prokaryotic community and were affiliated with the Cytophaga-Flavobacterium-Bacteroides phylum. Growth was demonstrated in saturated NaCl...
  57. Kazuoka T, Takigawa S, Arakawa N, Hizukuri Y, Muraoka I, Oikawa T, et al. Novel psychrophilic and thermolabile L-threonine dehydrogenase from psychrophilic Cytophaga sp. strain KUC-1. J Bacteriol. 2003;185:4483-9 pubmed
    A psychrophilic bacterium, Cytophaga sp. strain KUC-1, that abundantly produces a NAD(+)-dependent L-threonine dehydrogenase was isolated from Antarctic seawater, and the enzyme was purified...
  58. Bateman A, Kickhoefer V. The TROVE module: a common element in Telomerase, Ro and Vault ribonucleoproteins. BMC Bioinformatics. 2003;4:49 pubmed
    ..This work suggests that a number of ribonucleoprotein components use a common RNA-binding module. The TROVE module is also found in bacterial ribonucleoproteins suggesting an ancient origin for these ribonucleoproteins. ..
  59. Nedashkovskaya O, Vancanneyt M, Dawyndt P, Engelbeen K, Vandemeulebroecke K, Cleenwerck I, et al. Reclassification of [Cytophaga] marinoflava Reichenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov. and description of Leeuwenhoekiella aequorea sp. nov. Int J Syst Evol Microbiol. 2005;55:1033-8 pubmed
    ..1 % sequence similarity) being the misclassified species [Cytophaga] marinoflava...
  60. Radeva G, Selenska Pobell S. Bacterial diversity in water samples from uranium wastes as demonstrated by 16S rDNA and ribosomal intergenic spacer amplification retrievals. Can J Microbiol. 2005;51:910-23 pubmed
    ..Additional smaller populations of the Cytophaga-Flavobacterium-Bacteroides group and alpha- and delta-Proteobacteria were identified in the Shiprock samples as ..
  61. Matsuo Y, Suzuki M, Kasai H, Shizuri Y, Harayama S. Isolation and phylogenetic characterization of bacteria capable of inducing differentiation in the green alga Monostroma oxyspermum. Environ Microbiol. 2003;5:25-35 pubmed
    ..All these strains were located within the Cytophaga-Flavobacterium-Bacteroides (CFB) complex, and most of these strains were clustered in a clade comprising ..
  62. Kim O, Yoo J, Lee D, Ahn T, Song H. Monitoring of bacterial community in a coniferous forest soil after a wildfire. J Microbiol. 2004;42:278-84 pubmed
    ..In the surface unburned soil, the ratios of alpha-, beta- and gamma-proteobacteria, Cytophaga-Flavobacterium group, and other eubacteria groups to total eubacteria were 9.9, 10.6, 15.5, 9.0, and 55...
  63. Fernández Zenoff V, Sineriz F, Farias M. Diverse responses to UV-B radiation and repair mechanisms of bacteria isolated from high-altitude aquatic environments. Appl Environ Microbiol. 2006;72:7857-63 pubmed
    ..strain MF8 isolated from the planktonic community, and Cytophaga sp...
  64. Ribeiro E, Stafslien S, Cassé F, Callow J, Callow M, Pieper R, et al. Automated image-based method for laboratory screening of coating libraries for adhesion of algae and bacterial biofilms. J Comb Chem. 2008;10:586-94 pubmed publisher
    ..The data are used to calculate adhesion strength of organisms on experimental coatings. The results complement a number of physical and mechanical methods developed to screen large numbers of samples. ..
  65. Zeder M, Peter S, Shabarova T, Pernthaler J. A small population of planktonic Flavobacteria with disproportionally high growth during the spring phytoplankton bloom in a prealpine lake. Environ Microbiol. 2009;11:2676-86 pubmed publisher
    ..b>Cytophaga-Flavobacteria (CF) changed little in numbers, but featured high proportions of BrdU-positive cells (28 +/- 12%)...
  66. Olapade O. Molecular analyses of the diversity in marine bacterioplankton assemblages along the coastline of the northeastern Gulf of Mexico. Can J Microbiol. 2010;56:853-63 pubmed publisher
    ..analyses revealed the quantitative predominance of members of the Alphaproteobacteria subclass and the Cytophaga-Flavobacterium cluster within the bacterioplankton assemblages...
  67. Angelov A, Loderer C, Pompei S, Liebl W. Novel family of carbohydrate-binding modules revealed by the genome sequence of Spirochaeta thermophila DSM 6192. Appl Environ Microbiol. 2011;77:5483-9 pubmed publisher
    ..in Spirochaeta, but recently we found sequences with detectable similarity to the module in the draft genomes of Cytophaga fermentans and Mahella australiensis, both of which are phylogenetically very distant from S...
  68. Toncheva Panova T, Ivanova J. Interactions between the unicellular red alga Rhodella reticulata (Rhodophyta) and contaminated bacteria. J Appl Microbiol. 2002;93:497-504 pubmed
    To define the role of the bacterial strains LR1 and LR3 in the Rhodella cell destruction caused by Cytophaga sp.LR2. The bacteria were obtained from algal culture with destruction...
  69. Amaro A, Fuentes M, Ogalde S, Venegas J, Suarez Isla B. Identification and characterization of potentially algal-lytic marine bacteria strongly associated with the toxic dinoflagellate Alexandrium catenella. J Eukaryot Microbiol. 2005;52:191-200 pubmed
    ..analysis suggested that the most probable affiliations were to two bacterial phyla: Proteobacteria and the Cytophaga group. The molecular identification was complemented by morphological data and biochemical profiling...
  70. Elifantz H, Malmstrom R, Cottrell M, Kirchman D. Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Appl Environ Microbiol. 2005;71:7799-805 pubmed
    ..Actinobacteria and Betaproteobacteria contributed the most in the freshwater section, whereas Cytophaga-like bacteria and Alpha- and Gammaproteobacteria participated in EPS assimilation in the lower part of the ..
  71. Sobik P, Grunenberg J, Böröczky K, Laatsch H, Wagner Dobler I, Schulz S. Identification, synthesis, and conformation of tri- and tetrathiacycloalkanes from marine bacteria. J Org Chem. 2007;72:3776-82 pubmed
    Seven new cyclic natural polysulfides 1-7 were identified in extracts of two bacterial Cytophaga strains (CFB-phylum) isolated from biofilms from the North Sea...
  72. Zhu Y, Zhou H, Bi Y, Zhang W, Chen G, Liu W. Characterization of a family 5 glycoside hydrolase isolated from the outer membrane of cellulolytic Cytophaga hutchinsonii. Appl Microbiol Biotechnol. 2013;97:3925-37 pubmed publisher
    b>Cytophaga hutchinsonii is an abundant aerobic cellulolytic bacterium that rapidly digests crystalline cellulose in a contact-dependent manner...
  73. Chen N, Xu Y, Wang H, Lu X. [Factors affecting adhesion of Cytophaga hutchinsonii to cellulose]. Wei Sheng Wu Xue Bao. 2012;52:1027-32 pubmed
    The aim of the study was to understand the mechanism of Cytophaga hutchinsonii adhension to cellulose...
  74. Agarwal S, Hunnicutt D, McBride M. Cloning and characterization of the Flavobacterium johnsoniae (Cytophaga johnsonae) gliding motility gene, gldA. Proc Natl Acad Sci U S A. 1997;94:12139-44 pubmed
    ..A large number of nonmotile mutants of the gliding bacterium Flavobacterium johnsoniae (Cytophaga johnsonae) have been previously isolated, and genetic techniques to analyze these mutants have recently been ..
  75. Muller K, Schmid E, Michel R. Intracellular bacteria of Acanthamoebae resembling Legionella spp. turned out to be Cytophaga sp. Zentralbl Bakteriol. 1999;289:389-97 pubmed
    ..demonstrated by electron microscopy they resembled Llaps (Legionella-like amoebal pathogens) but turned out to be Cytophaga sp. as shown by a typical profile of cellular fatty acids obtained by means of gas-liquid chromatography.
  76. Yokokawa T, Nagata T. Growth and grazing mortality rates of phylogenetic groups of bacterioplankton in coastal marine environments. Appl Environ Microbiol. 2005;71:6799-807 pubmed
    ..and grazing mortality rates of bacterial phylogenetic groups (alpha-, beta-, and gamma-proteobacteria and the Cytophaga-Flavobacter cluster) detected by fluorescent in situ hybridization. Growth rates varied greatly (1.2- to 4...
  77. Viñas M, Sabaté J, Guasp C, Lalucat J, Solanas A. Culture-dependent and -independent approaches establish the complexity of a PAH-degrading microbial consortium. Can J Microbiol. 2005;51:897-909 pubmed
    ..Proteobacteria were the dominant group, representing 83% of the total, while the Cytophaga-Flexibacter-Bacteroides group (CFB) was 11% and the Ascomycota fungi 6%...
  78. Sintes E, Herndl G. Quantifying substrate uptake by individual cells of marine bacterioplankton by catalyzed reporter deposition fluorescence in situ hybridization combined with microautoradiography. Appl Environ Microbiol. 2006;72:7022-8 pubmed
    ..Therefore, this approach allows comparisons of single-cell activities for bacterial communities obtained from different sites or growing under different ecological conditions...
  79. Lee Y, Kim H, Liu C, Lee H. A simple method for DNA extraction from marine bacteria that produce extracellular materials. J Microbiol Methods. 2003;52:245-50 pubmed
    ..and a Cytophaga sp. Previously, DNA purification from these strains was hindered by the presence of extracellular materials...
  80. Nakagawa T, Fukui M. Phylogenetic characterization of microbial mats and streamers from a Japanese alkaline hot spring with a thermal gradient. J Gen Appl Microbiol. 2002;48:211-22 pubmed
    ..This result suggests that in situ sulfide is partly produced by Thermodesulfobacteria-like sulfate-reducing bacteria in the streamers...
  81. Morizono H, Cabrera Luque J, Shi D, Gallegos R, Yamaguchi S, Yu X, et al. Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis. J Bacteriol. 2006;188:2974-82 pubmed
    ..transcarbamylases that might also be misannotated were found in the genomes of members of other xanthomonads, Cytophaga, and Bacteroidetes as well as in DNA sequences of bacteria from environmental isolates...
  82. Gorski L, Leadbetter E, Godchaux W. Temporal sequence of the recovery of traits during phenotypic curing of a Cytophaga johnsonae motility mutant. J Bacteriol. 1991;173:7534-9 pubmed
    ..and the resulting formation of nonspreading colonies of mutants of the gram-negative gliding bacterium Cytophaga johnsonae have been correlated with the loss of cell surface features of the organism...
  83. Kisand V, Cuadros R, Wikner J. Phylogeny of culturable estuarine bacteria catabolizing riverine organic matter in the northern Baltic Sea. Appl Environ Microbiol. 2002;68:379-88 pubmed
    ..Five species in the Cytophaga-Flexibacter-Bacteroides group and one in the gamma-proteobacteria phylogenetic group (Marinomonas sp...
  84. Varbanets L, Ivanitsa V, Brovarskaia O, Vinarskaia N, Zimakovskaia L. [Isolation and characterization of Cytophaga lytica lipopolysaccharide]. Mikrobiol Z. 2001;63:10-20 pubmed
    ..components: lipid A, O-specific polysaccharide (O-PS) and oligosaccharide core (OG-core) have been isolated from Cytophaga lytica. 3-Oxytetradecanoic (40.8%) and dodecanoic (28...
  85. Webster N, Smith L, Heyward A, Watts J, Webb R, Blackall L, et al. Metamorphosis of a scleractinian coral in response to microbial biofilms. Appl Environ Microbiol. 2004;70:1213-21 pubmed
    ..analysis of FISH data showed that the Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, and Cytophaga-Flavobacterium of Bacteroidetes had the largest influence on overall community composition...
  86. Stafslien S, Daniels J, Mayo B, Christianson D, Chisholm B, Ekin A, et al. Combinatorial materials research applied to the development of new surface coatings IV. A high-throughput bacterial biofilm retention and retraction assay for screening fouling-release performance of coatings. Biofouling. 2007;23:45-54 pubmed
    ..Coatings were cast in modified 24-well tissue culture plates and inoculated with the marine bacterium Cytophaga lytica for attachment and biofilm growth...
  87. Mojica K, Cooney M. The uronic acids assay: a method for the determination of chemical activity on biofilm EPS. Biofouling. 2010;26:301-12 pubmed publisher
    ..Results demonstrate that the uronic acids assay can augment existing biofilm characterization methods by providing a quantitative measure of biofilm EPS...
  88. Carletti M. On the stability properties of a stochastic model for phage-bacteria interaction in open marine environment. Math Biosci. 2002;175:117-31 pubmed
    ..The stochastic stability properties of the model are investigated both analytically and numerically suggesting that the deterministic model is robust with respect to stochastic perturbations...
  89. Johansen J, Binnerup S. Contribution of cytophaga-like bacteria to the potential of turnover of carbon, nitrogen, and phosphorus by bacteria in the rhizosphere of barley (Hordeum vulgare L.). Microb Ecol. 2002;43:298-306 pubmed
    ..No changes were observed in the bulk soil. Two taxonomic groups were followed: Cytophaga-like bacteria (CLB) and fluorescent pseudomonads, the latter being abundant in the rhizosphere and important ..
  90. Nordness M, Zacharisen M, Schlueter D, Fink J. Occupational lung disease related to cytophaga endotoxin exposure in a nylon plant. J Occup Environ Med. 2003;45:385-92 pubmed
    ..Differentiating between humidifier fever and hypersensitivity pneumonitis (HP) is challenging. Cytophaga, an endotoxin-producing bacteria, was isolated from the plant air-conditioning system...
  91. Vatsos I, Thompson K, Adams A. Starvation of Flavobacterium psychrophilum in broth, stream water and distilled water. Dis Aquat Organ. 2003;56:115-26 pubmed
    ..Bacteria were maintained in either Cytophaga broth, filtered stream water, or filtered distilled water, or were maintained in broth after disinfection as a ..
  92. Pernthaler J, Zöllner E, Warnecke F, Jürgens K. Bloom of filamentous bacteria in a mesotrophic lake: identity and potential controlling mechanism. Appl Environ Microbiol. 2004;70:6272-81 pubmed
    ..This points at the potential importance of filter-feeding zooplankton in controlling the occurrence and species composition of filamentous bacterial morphotypes in freshwater plankton...