bradyrhizobiaceae

Summary

Summary: A proposed family of bacteria belonging to the alpha-2 subgroup of PROTEOBACTERIA.

Top Publications

  1. Pearce S, Pandey R, Dorrian S, Russell R, Oakeshott J, Pandey G. Genome sequence of the newly isolated chemolithoautotrophic Bradyrhizobiaceae strain SG-6C. J Bacteriol. 2011;193:5057 pubmed publisher
    Strain SG-6C (DSM 23264, CCM 7827) is a chemolithoautotrophic bacterium of the family Bradyrhizobiaceae. It can also grow heterotrophically under appropriate environmental conditions...
  2. Paul D, Bridges S, Burgess S, Dandass Y, Lawrence M. Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T. J Bacteriol. 2008;190:5531-2 pubmed publisher
    ..It is also capable of heterotrophic growth under appropriate environmental conditions. Here we report the annotated genome sequence of the circular chromosome of this organism...
  3. Shettigar M, Pearce S, Pandey R, Khan F, Dorrian S, Balotra S, et al. Cloning of a novel 6-chloronicotinic acid chlorohydrolase from the newly isolated 6-chloronicotinic acid mineralizing Bradyrhizobiaceae strain SG-6C. PLoS ONE. 2012;7:e51162 pubmed publisher
    ..This Bradyrhizobiaceae, designated strain SG-6C, hydrolytically dechlorinated 6-chloronicotinic acid to 6-hydroxynicotinic acid, ..
  4. Itakura M, Saeki K, Omori H, Yokoyama T, Kaneko T, Tabata S, et al. Genomic comparison of Bradyrhizobium japonicum strains with different symbiotic nitrogen-fixing capabilities and other Bradyrhizobiaceae members. ISME J. 2009;3:326-39 pubmed publisher
    ..japonicum (a symbiotic nitrogen-fixing bacterium associated with soybean) and eight other members of the Bradyrhizobiaceae by DNA macroarray of B. japonicum USDA110. CGH clearly discriminated genomic variations in B...
  5. Zerlauskiene O, Trinkunas G, Gall A, Robert B, Urboniene V, Valkunas L. Static and dynamic protein impact on electronic properties of light-harvesting complex LH2. J Phys Chem B. 2008;112:15883-92 pubmed publisher
    ..The equilibration factor between these dichotomous states mainly determines the temperature dependence of the peak shift...
  6. Yasuda T, Waki M, Fukumoto Y, Hanajima D, Kuroda K, Suzuki K. Characterization of the denitrifying bacterial community in a full-scale rockwool biofilter for compost waste-gas treatment. Appl Microbiol Biotechnol. 2017;101:6779-6792 pubmed publisher
    ..The corresponding denitrifying enzymes were mainly related to those from Phyllobacteriaceae, Bradyrhizobiaceae, and Alcaligenaceae bacteria and to environmental clones retrieved from agricultural soil, activated sludge, ..
  7. Ding L, Su J, Sun G, Wu J, Wei W. Increased microbial functional diversity under long-term organic and integrated fertilization in a paddy soil. Appl Microbiol Biotechnol. 2018;102:1969-1982 pubmed publisher
    ..composition only occurred in the NPKR and L-NPKR treatments, with enrichment of certain groups including Bradyrhizobiaceae and Rhodospirillaceae families that benefit higher productivity...
  8. Paul D, Kumar R, Nanduri B, French T, Pendarvis K, Brown A, et al. Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions. PLoS ONE. 2011;6:e17111 pubmed publisher
    ..We found that adaptation to chemolithoautotrophic growth involved adaptations in cell envelope, oxidative homeostasis, and metabolic pathways such as glyoxylate shunt and amino acid/cofactor biosynthetic enzymes. ..
  9. Warren M, Lin X, Gaby J, Kretz C, Kolton M, Morton P, et al. Molybdenum-based diazotrophy in a Sphagnum peatland in northern Minnesota. Appl Environ Microbiol. 2017;: pubmed publisher
    ..suggested that diazotrophy in surface peat was primarily mediated by Alphaproteobacteria (Bradyrhizobiaceae and Beijerinckiaceae)...

More Information

Publications80

  1. Hiorns W, Hastings R, Head I, McCarthy A, Saunders J, Pickup R, et al. Amplification of 16S ribosomal RNA genes of autotrophic ammonia-oxidizing bacteria demonstrates the ubiquity of nitrosospiras in the environment. Microbiology. 1995;141 ( Pt 11):2793-800 pubmed
    ..This demonstrates that Nitrosospira spp. are widespread in the environment. The implications of the detection of Nitrosomonas DNA only after enrichment culture are discussed. ..
  2. Chen X, Li Q, Li G, Lei H, Jiang Y, Han L, et al. Enterovirga rhinocerotis gen. nov., sp. nov., isolated from Rhinoceros unicornis faeces. Antonie Van Leeuwenhoek. 2017;110:553-562 pubmed publisher
    ..1-93.7%) in the family Beijerinckiacea, and the genus Bosea (93.1-93.8%) in the family Bradyrhizobiaceae. The phylogenetic analysis, combined with the chemical characteristics, suggest that the strain represents a ..
  3. Kornaros M, Dokianakis S, Lyberatos G. Sensitivity analysis of a biofilm model describing mixed growth of nitrite oxidisers in a CSTR. Water Sci Technol. 2006;53:313-20 pubmed
    ..The effect of bulk dissolved oxygen (DO) concentration on the validity of this model is addressed and minimum non-limiting DO concentrations are proposed depending on the reactor configuration. ..
  4. Rong Z, Liang S, Lu J, He Y, Luo Y, You C, et al. [Effect of intermittent fasting on physiology and gut microbiota in presenium rats]. Nan Fang Yi Ke Da Xue Xue Bao. 2016;37:423-430 pubmed
    ..b>Bradyrhizobiaceae was found to be positively correlated with CHOL and HDL-C, and RF39 was inversely correlated with the weight ..
  5. Rotthauwe J, de Boer W, Liesack W. Comparative analysis of gene sequences encoding ammonia monooxygenase of Nitrosospira sp. AHB1 and Nitrosolobus multiformis C-71. FEMS Microbiol Lett. 1995;133:131-5 pubmed
  6. Msaddak A, Durán D, Rejili M, Mars M, Ruiz Argüeso T, Imperial J, et al. Diverse Bacteria Affiliated with the Genera Microvirga, Phyllobacterium, and Bradyrhizobium Nodulate Lupinus micranthus Growing in Soils of Northern Tunisia. Appl Environ Microbiol. 2017;83: pubmed publisher
    ..micranthus root nodule symbionts in northern Tunisia, including strains from the Bradyrhizobiaceae, Methylobacteriaceae, and Phyllobacteriaceae families, in contrast with those of the ..
  7. Li W, Sun Y, Liu Z, Ma Q, Yang Q. [Analysis on Diversity of Denitrifying Microorganisms in Sequential Batch Bioreactor Landfill]. Huan Jing Ke Xue. 2016;37:342-9 pubmed
    ..Additionally, another group in the gene clone library of denitrifying bacteria may be classified as Bradyrhizobiaceae of alpha-Proteobacteria.
  8. Konishi N, Okubo T, Yamaya T, Hayakawa T, Minamisawa K. [Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis]. Microbes Environ. 2017;: pubmed publisher
    ..relative abundance of several major root-associated bacteria including Burkholderiaceae, Paenibacillaceae, Bradyrhizobiaceae, and Rhizobiaceae markedly fluctuated with the application of nitrate...
  9. Matsuba D, Takazaki H, Sato Y, Takahashi R, Tokuyama T, Wakabayashi K. Susceptibility of ammonia-oxidizing bacteria to nitrification inhibitors. Z Naturforsch C. 2003;58:282-7 pubmed
    ..85, 91.53 and 90.29, respectively. However, no clear correlation has been found yet between pI50-values and percent similarity of 16S rRNA gene sequence among ammonia-oxidizing bacteria. ..
  10. Brouchkov A, Kabilov M, Filippova S, Baturina O, Rogov V, Galchenko V, et al. Bacterial community in ancient permafrost alluvium at the Mammoth Mountain (Eastern Siberia). Gene. 2017;636:48-53 pubmed publisher
    ..OTUs pertaining to the top families (Chitinophagaceae, Caulobacteraceae, Sphingomonadaceae, Bradyrhizobiaceae, Halomonadaceae) held >90% of reads. The abundance of Actinobacteria was less (0...
  11. Oh S, Hammes F, Liu W. Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant. Water Res. 2018;128:278-285 pubmed publisher
    ..Network analysis identified a filter-specific colonization pattern of bacterial groups. Bradyrhizobiaceae were abundant in GAC, whereas Nitrospira were enriched in the sand-associated filters (RSF, SCM, and SSF)...
  12. Paul D, Bridges S, Burgess S, Dandass Y, Lawrence M. Complete genome and comparative analysis of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5. BMC Genomics. 2010;11:511 pubmed publisher
    ..Although there is significant conservation of genome organization between the species, there are major differences in many metabolic pathways that reflect the adaptive strategies unique to each species. ..
  13. Singleton D, Adrion A, Aitken M. Surfactant-induced bacterial community changes correlated with increased polycyclic aromatic hydrocarbon degradation in contaminated soil. Appl Microbiol Biotechnol. 2016;100:10165-10177 pubmed
    ..and Luteimonas genera, as well as uncharacterized organisms within the families Chitinophagaceae and Bradyrhizobiaceae. Targeted isolation identified a subset of the community likely using the surfactants as a growth substrate, ..
  14. Shi Y, Cui L, Yuan J. Gene cloning, expression, and substrate specificity of an imidase from the strain Pseudomonas putida YZ-26. Curr Microbiol. 2007;55:61-4 pubmed
    ..The purified enzyme showed the highest activity and affinity toward succinimide, and some other substrates, such as dihydrouracil, hydantoin, succinimide, and maleimde, were investigated...
  15. van Berkum P, Leibold J, Eardly B. Proposal for combining Bradyrhizobium spp. (Aeschynomene indica) with Blastobacter denitrificans and to transfer Blastobacter denitrificans (Hirsch and Muller, 1985) to the genus Bradyrhizobium as Bradyrhizobium denitrificans (comb. nov.). Syst Appl Microbiol. 2006;29:207-15 pubmed
    ..indica belong to a common group of bacteria. Therefore, it is proposed that they be combined into the genus Bradyrhizobium and that LMG 8443 be transferred to this genus as the type strain for B. denitrificans...
  16. Meijer W, Enequist H, Terpstra P, Dijkhuizen L. Nucleotide sequences of the genes encoding fructosebisphosphatase and phosphoribulokinase from Xanthobacter flavus H4-14. J Gen Microbiol. 1990;136:2225-30 pubmed
    ..The ORFs were identified as the genes encoding FBPase and PRK, respectively, on the basis of similarity with FBPase and PRK sequences from other sources...
  17. Bell L, Ferguson S. Nitric and nitrous oxide reductases are active under aerobic conditions in cells of Thiosphaera pantotropha. Biochem J. 1991;273(Pt 2):423-7 pubmed
  18. Juretschko S, Timmermann G, Schmid M, Schleifer K, Pommerening Röser A, Koops H, et al. Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microbiol. 1998;64:3042-51 pubmed
    ..FISH of the activated sludge with this probe demonstrated that Nitrospira-like bacteria were present in significant numbers (9% of the total bacterial counts) and frequently occurred in coaggregated microcolonies with N. mobilis...
  19. Kowalchuk G, Naoumenko Z, Derikx P, Felske A, Stephen J, Arkhipchenko I. Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials. Appl Environ Microbiol. 1999;65:396-403 pubmed
  20. Abella C, Ivanov V, Kim I. Taxon-specific content of oligonucleotide triplets in 16S rRNAs of anoxygenic phototrophic and nitrifying bacteria. J Theor Biol. 1999;196:289-96 pubmed
    ..The biological significance of these data is the evidence that not only the sequence but the number of nucleotide triplets in 16S rRNAs reflects the phylogeny of corresponding taxa...
  21. Head I, Hiorns W, Embley T, McCarthy A, Saunders J. The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences. J Gen Microbiol. 1993;139 Pt 6:1147-53 pubmed
    ..It is therefore proposed that Nitrosolobus, Nitrosovibrio and Nitrosospira strains be reclassified in a single genus for which the name Nitrosospira has priority...
  22. Jetten M, Logemann S, Muyzer G, Robertson L, de Vries S, van Loosdrecht M, et al. Novel principles in the microbial conversion of nitrogen compounds. Antonie Van Leeuwenhoek. 1997;71:75-93 pubmed
  23. Ouattara A, Assih E, Thierry S, Cayol J, Labat M, Monroy O, et al. Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester. Int J Syst Evol Microbiol. 2003;53:1247-51 pubmed
    ..felis. Overall results suggest that strain AMX 51(T) (=DSM 13099(T)=ATCC 700918(T)=CIP 106457(T)) represents a novel species of the genus Bosea; the name Bosea minatitlanensis sp. nov. is proposed...
  24. Kreß O, Gnida M, Pelzmann A, Marx C, Meyer Klaucke W, Meyer O. Reversible inactivation of CO dehydrogenase with thiol compounds. Biochem Biophys Res Commun. 2014;447:413-8 pubmed publisher
  25. Xiao J, Jiang H, Chu S. [Identification of a new heterotrophic nitrobacterium strain Colloides sp. JZ1-1 and its nitrifying capability]. Ying Yong Sheng Tai Xue Bao. 2012;23:1635-40 pubmed
    ..JZ1-1 could degrade ammonium nitrogen effectively when the initial concentration of ammonium nitrogen was from 100 mg x L(-1) to 500 mg x L(-1). JZ1-1 was stable after 5 generations of subculture...
  26. Kempher M, Madigan M. Phylogeny and photoheterotrophy in the acidophilic phototrophic purple bacterium Rhodoblastus acidophilus. Arch Microbiol. 2012;194:567-74 pubmed publisher
    ..Our work shows that some phylogenetic and physiological diversity exists within the species Rbl. acidophilus and supports the observation that few species of acidophilic purple bacteria appear to exist in nature...
  27. Noisangiam R, Nuntagij A, Pongsilp N, Boonkerd N, Denduangboripant J, Ronson C, et al. Heavy metal tolerant Metalliresistens boonkerdii gen. nov., sp. nov., a new genus in the family Bradyrhizobiaceae isolated from soil in Thailand. Syst Appl Microbiol. 2010;33:374-82 pubmed publisher
    ..showed that the non-symbiotic isolates were differentiated from the other related genera in the family Bradyrhizobiaceae. Therefore, the non-symbiotic isolates represented a novel genus and species, for which the name ..
  28. Lipski A, Spieck E, Makolla A, Altendorf K. Fatty acid profiles of nitrite-oxidizing bacteria reflect their phylogenetic heterogeneity. Syst Appl Microbiol. 2001;24:377-84 pubmed
    ..A cluster analysis of the fatty acid profiles is in accordance with 16S rRNA sequence-based phylogeny of the nitrite-oxidizing bacteria...
  29. Miché L, Moulin L, Chaintreuil C, Contreras Jiménez J, Munive Hernández J, Del Carmen Villegas Hernandez M, et al. Diversity analyses of Aeschynomene symbionts in Tropical Africa and Central America reveal that nod-independent stem nodulation is not restricted to photosynthetic bradyrhizobia. Environ Microbiol. 2010;12:2152-64 pubmed publisher
    ..and photosynthetic ones. This result opens new prospects about stem-nodulating bradyrhizobial evolution...
  30. Treangen T, Rocha E. Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet. 2011;7:e1001284 pubmed publisher
    ..Sulfolobus), average-sized genomes (Bacillus, Enterobacteriaceae), and large genomes (Pseudomonas, Bradyrhizobiaceae) to untangle the effects of duplication and horizontal transfer...
  31. Bek A, Sauer J, Thygesen M, Duus J, Petersen B, Thirup S, et al. Improved characterization of nod factors and genetically based variation in LysM Receptor domains identify amino acids expendable for nod factor recognition in Lotus spp. Mol Plant Microbe Interact. 2010;23:58-66 pubmed publisher
    ..These results highlight the importance of additional checkpoints during nitrogen-fixing symbiosis and define several amino acids in the LysM domains as expendable for perception of the two differentially carbamoylated Nod factors...
  32. Vieira M, Pacheco A, Pinho I, Melo L. The effect of clay particles on the activity of suspended autotrophic nitrifying bacteria and on the performance of an air-lift reactor. Environ Technol. 2001;22:123-35 pubmed
    ..The low adsorption of ammonia by the kaolin indicated that the clay particles embedded in the biofilm did not probably retain the ions. Although it was not proved, precipitation of salts may have occurred...
  33. Hamaki T, Suzuki M, Fudou R, Jojima Y, Kajiura T, Tabuchi A, et al. Isolation of novel bacteria and actinomycetes using soil-extract agar medium. J Biosci Bioeng. 2005;99:485-92 pubmed
    ..indicated that both strains were alpha-Proteobacteria belonging to the order Rhizobiales and the family Bradyrhizobiaceae. Since they had low homology (96%) with their close relatives, it is possible that th1 and th2 belong to a ..
  34. Kulichevskaya I, Guzev V, Gorlenko V, Liesack W, Dedysh S. Rhodoblastus sphagnicola sp. nov., a novel acidophilic purple non-sulfur bacterium from Sphagnum peat bog. Int J Syst Evol Microbiol. 2006;56:1397-402 pubmed
    ..Thus, strain RS(T) represents a novel species of the genus Rhodoblastus, for which the name Rhodoblastus sphagnicola sp. nov. is proposed. Strain RS(T) (=DSM 16996(T) = VKM B-2361(T)) is the type strain...
  35. Tokutomi T, Kiyokawa T, Shibayama C, Harada H, Ohashi A. Effect of inorganic carbon on nitrite accumulation in an aerobic granule reactor. Water Sci Technol. 2006;53:285-94 pubmed
    ..These results show that a high concentration of inorganic carbon is one of the control parameters for accumulating nitrite in biofilm nitrification system...
  36. Salhi S, Elie C, Jean Jean O, Meunier Rotival M, Forterre P, Rossignol J, et al. The DNA polymerase from the archaebacterium Sulfolobus acidocaldarius: a thermophilic and thermoresistant enzyme which can perform automated polymerase chain reaction. Biochem Biophys Res Commun. 1990;167:1341-7 pubmed
    ..The ability of S. acidocaldarius DNA polymerase to perform P.C.R. under less stringent requirement of MgCl2 concentration gives this enzyme a non-negligible advantage over the Taq DNA polymerase...
  37. De Meyer S, Willems A. Multilocus sequence analysis of Bosea species and description of Bosea lupini sp. nov., Bosea lathyri sp. nov. and Bosea robiniae sp. nov., isolated from legumes. Int J Syst Evol Microbiol. 2012;62:2505-2510 pubmed publisher
    ..closely related to Bosea species (100-97?% similarity), belonging to the class Alphaproteobacteria, family Bradyrhizobiaceae. The closest relatives of LMG 26383(T), LMG 26379(T) and LMG 26381(T) were respectively the type strains of ..
  38. Teske A, Alm E, Regan J, Toze S, Rittmann B, Stahl D. Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria. J Bacteriol. 1994;176:6623-30 pubmed
    ..Each nitrifier retains the general structural features of the specific ancestor's photosynthetic membrane complex. Thus, the nitrifiers, as a group, apparently are not derived from an ancestral nitrifying phenotype...
  39. Zhang S, Zhang M, Xu L, Zhu J, Liu H. [Investigation of nitrogen removal performance with membrane sequencing batch reactor process]. Huan Jing Ke Xue. 2008;29:2798-803 pubmed
    ..Bigger volumetric exchange ratio was helpful for nitrogen removal and the system treatment capacity. The C/N ratio 2 was suitable to good denitrification rate, while there was a NO(2-) -N accumulation if C/N ratio was larger than 2...
  40. Sayavedra Soto L, Hommes N, Alzerreca J, Arp D, Norton J, Klotz M. Transcription of the amoC, amoA and amoB genes in Nitrosomonas europaea and Nitrosospira sp. NpAV. FEMS Microbiol Lett. 1998;167:81-8 pubmed
    ..Two other transcripts were detected with amo probes and may be a product of processing of the amoCAB mRNA or independent transcripts...
  41. Knowles R. Denitrification: microbiology and ecology. Life Support Biosph Sci. 1996;3:31-4 pubmed
    ..The prediction of rates of denitrification and release of intermediates such as nitrous oxide in particular environments is proving to be difficult...
  42. Weon H, Kwon S, Son J, Jo E, Kim S, Kim Y, et al. Description of Microvirga aerophila sp. nov. and Microvirga aerilata sp. nov., isolated from air, reclassification of Balneimonas flocculans Takeda et al. 2004 as Microvirga flocculans comb. nov. and emended description of the genus Microvirga. Int J Syst Evol Microbiol. 2010;60:2596-600 pubmed publisher
    ..nov. (type strain TFB(T) =JCM 11936(T) =KCTC 12101(T) =IAM 15034(T) =ATCC BAA-817(T)) is proposed and an emended description of the genus Microvirga is provided...
  43. Lamoth F, Greub G. Amoebal pathogens as emerging causal agents of pneumonia. FEMS Microbiol Rev. 2010;34:260-80 pubmed publisher
    ..Specifically, we discuss the emerging pathogenic roles of Legionella-like amoebal pathogens, novel Chlamydiae (Parachlamydia acanthamoebae, Simkania negevensis), waterborne mycobacteria and Bradyrhizobiaceae (Bosea and Afipia spp.).
  44. Hall S, Hugenholtz P, Siyambalapitiya N, Keller J, Blackall L. The development and use of real-time PCR for the quantification of nitrifiers in activated sludge. Water Sci Technol. 2002;46:267-72 pubmed
    ..It was concluded that the method is sensitive and reproducible but has some constraints on the quantitative efficiency. A survey of full-scale systems for Nitrospira spp. was carried out and the results are presented here...
  45. Klotz M, Alzerreca J, Norton J. A gene encoding a membrane protein exists upstream of the amoA/amoB genes in ammonia oxidizing bacteria: a third member of the amo operon?. FEMS Microbiol Lett. 1997;150:65-73 pubmed
    ..Topological analysis of the predicted primary structure revealed 6 membrane spanning domains. The amoC gene was expressed in recombinant Escherichia coli from its indigenous promoter...
  46. Dandie C, Miller M, Burton D, Zebarth B, Trevors J, Goyer C. Nitric oxide reductase-targeted real-time PCR quantification of denitrifier populations in soil. Appl Environ Microbiol. 2007;73:4250-8 pubmed
    ..cnorB(B) guild densities did not increase significantly under denitrifying conditions in response to increasing C additions...
  47. Hooper A, Vannelli T, Bergmann D, Arciero D. Enzymology of the oxidation of ammonia to nitrite by bacteria. Antonie Van Leeuwenhoek. 1997;71:59-67 pubmed
    ..The enzymes which catalyze the oxidation of ammonia to nitrite by autotrophic bacteria are reviewed. A comparison is made with enzymes which catalyze the same reactions in methylotrophs and organotrophic heterotrophic bacteria...
  48. Flyvbjerg J, Jørgensen C, Arvin E, Jensen B, Olsen S. Biodegradation of ortho-cresol by a mixed culture of nitrate-reducing bacteria growing on toluene. Appl Environ Microbiol. 1993;59:2286-92 pubmed
    ..4 mg of o-cresol per mg of biomass protein per h, and the first-order decay constant for o-cresol-degrading biomass activity was estimated to be 0.15 h-1.(ABSTRACT TRUNCATED AT 250 WORDS)..
  49. Hyman M, Arp D. The small-scale production of [U-14C]acetylene from Ba14CO3: application to labeling of ammonia monooxygenase in autotrophic nitrifying bacteria. Anal Biochem. 1990;190:348-53 pubmed
  50. Regan J, Harrington G, Noguera D. Ammonia- and nitrite-oxidizing bacterial communities in a pilot-scale chloraminated drinking water distribution system. Appl Environ Microbiol. 2002;68:73-81 pubmed
    ..oligotropha and N. ureae in chloraminated systems and demonstrate the presence of NOB, indicating a biological mechanism for nitrite loss that contributes to a reduction in nitrite-associated chloramine decay...
  51. Ward B. Nitrification and ammonification in aquatic systems. Life Support Biosph Sci. 1996;3:25-9 pubmed
    ..The nature of the net flux (which direction and which form of nitrogen) is a function of closely coupled reactions (ammonification-nitrification-denitrification) in the nitrogen cycle...
  52. Alzerreca J, Norton J, Klotz M. The amo operon in marine, ammonia-oxidizing gamma-proteobacteria. FEMS Microbiol Lett. 1999;180:21-9 pubmed
    ..We conclude that the amo genes will allow for a finer scale phylogenetic differentiation than 16S rDNA within the gamma-subdivision AOB...
  53. Hao X, Zhu J, Cao X, Cao Y. [Experimental determination of bacterial decay characteristics in biological wastewater treatment system]. Huan Jing Ke Xue. 2008;29:3104-9 pubmed
    ..In a heterotrophic system, however, activity decrease was responsible for 80% of cell decay, and the other cell decay for 20% was caused by cell death...
  54. Sheng G, Yu H, Wang C. FTIR-spectral analysis of two photosynthetic hydrogen-producing [corrected] strains and their extracellular polymeric substances. Appl Microbiol Biotechnol. 2006;73:204-10 pubmed
    ..As an easy, rapid, and direct technique, the FTIR spectroscopy could be used to characterize the components and their relative contents of EPS of photosynthetic bacteria...
  55. Phillips C, Smith Z, Embley T, Prosser J. Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Northwestern Mediterranean Sea. Appl Environ Microbiol. 1999;65:779-86 pubmed
  56. Kostyal E, Borsányi M, Rigottier Gois L, Salkinoja Salonen M. Organic halogen removal from chlorinated humic ground water and lake water by nitrifying fluidized-bed biomass characterised by electron microscopy and molecular methods. Appl Microbiol Biotechnol. 1998;50:612-22 pubmed
    ..The most intensive band obtained with the Nitroso4E primer was shown to be closely related to Nitrosomonas europaea by restriction analysis...
  57. Hastings R, Butler C, Singleton I, Saunders J, McCarthy A. Analysis of ammonia-oxidizing bacteria populations in acid forest soil during conditions of moisture limitation. Lett Appl Microbiol. 2000;30:14-8 pubmed
    ..1 and 5.2. Nitrosomonas spp. were detected less often, but appeared to exhibit more rapid recovery than the Nitrosospira spp. when drought conditions were relieved by rainfall...
  58. Green M, Denekamp N, Lahav O, Tarre S. Production of gaseous nitrogen compounds in a novel process for ammonium removal. Water Sci Technol. 2002;46:215-22 pubmed
  59. Zhou R, Zhao Y, Zhu Z, Sun Y, Zhou H, Hua F, et al. [Redox zones and its functional bacteria in a contaminated landfill site]. Huan Jing Ke Xue. 2008;29:3270-4 pubmed
    ..Evolvement of functional bacterial community brings the redox zones substitute...
  60. Khamis A, Colson P, Raoult D, Scola B. Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences. Appl Environ Microbiol. 2003;69:6740-9 pubmed
  61. Dong C, Hu H, Wei D, Huang X, Qian Y. [Joint inhibition of benzene and monosubstituted benzenes on ammonia-oxidizing activity of sediment]. Huan Jing Ke Xue. 2004;25:106-9 pubmed
    ..197 - 0.236ME. With the increase of mixed electronegativities (MEs), the joint inhibitions of mixtures increased...
  62. De Meyer S, Coorevits A, Willems A. Tardiphaga robiniae gen. nov., sp. nov., a new genus in the family Bradyrhizobiaceae isolated from Robinia pseudoacacia in Flanders (Belgium). Syst Appl Microbiol. 2012;35:205-14 pubmed publisher
    ..and Nitrobacter species (97% sequence similarity), belonging to the class Alphaproteobacteria and family Bradyrhizobiaceae. The results of physiological and biochemical tests together with sequence analysis of housekeeping genes (..
  63. Li H, Gao M, Yang Q, Yang M. [Activity of nitrifiers and metabolized products in a membrane bioreactor MBR under the condition of non-sludge discharge]. Huan Jing Ke Xue. 2004;25:89-91 pubmed
    ..The ECP content increased from the initial 300 mg/L to 600 mg/L. Batch tests using the extracted ECP also indicated that the activity of nitrifiers could be inhibited by the existence of ECP...
  64. Małek W, Sajnaga E, Wdowiak Wróbel S, Studzińska B, Icka I, Nosalewicz I, et al. Characterization of phages virulent for Sarothamnus scoparius bradyrhizobia. Curr Microbiol. 2005;51:244-9 pubmed
    ..Phages specific for S. scoparius rhizobia were differentiated not only by morphology and host range but also by a genome size that was in the range from 47,583 to 60,098 b.p...
  65. Singh J, Kashyap A. Dynamics of viable nitrifier community, N-mineralization and nitrification in seasonally dry tropical forests and savanna. Microbiol Res. 2006;161:169-79 pubmed
    ..It was concluded that soil microbial process (N-mineralization and nitrification) and nitrifier population size were dependent on site topography, vegetation cover and soil moisture status...
  66. Papen H, Gessler A, Zumbusch E, Rennenberg H. Chemolithoautotrophic nitrifiers in the phyllosphere of a spruce ecosystem receiving high atmospheric nitrogen input. Curr Microbiol. 2002;44:56-60 pubmed
  67. Kaur J, Verma M, Lal R. Rhizobium rosettiformans sp. nov., isolated from a hexachlorocyclohexane dump site, and reclassification of Blastobacter aggregatus Hirsch and Muller 1986 as Rhizobium aggregatum comb. nov. Int J Syst Evol Microbiol. 2011;61:1218-25 pubmed publisher
    ..It is also proposed that Blastobacter aggregatus Hirsch and Müller 1986 be transferred to the genus Rhizobium as Rhizobium aggregatum comb. nov. (type strain IFAM 1003(T) ?=?DSM 1111(T) ?=?ATCC 43293(T))...
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