escherichia

Summary

Summary: A genus of gram-negative, facultatively anaerobic, rod-shaped bacteria whose organisms occur in the lower part of the intestine of warm-blooded animals. The species are either nonpathogenic or opportunistic pathogens.

Top Publications

  1. Glynn A, Howard C. The sensitivity to complement of strains of Escherichia coli related to their K antigens. Immunology. 1970;18:331-46 pubmed
  2. Silverman A, Baron E, Kool E. RNA-templated chemistry in cells: discrimination of Escherichia, Shigella and Salmonella bacterial strains with a new two-color FRET strategy. Chembiochem. 2006;7:1890-4 pubmed
  3. Huys G, Cnockaert M, Janda J, Swings J. Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children. Int J Syst Evol Microbiol. 2003;53:807-10 pubmed
    ..with the API 20E system but, in fact, show more phenotypic and genotypic resemblance to members of the genus Escherichia. By 16S rDNA sequencing, one representative strain of the ICDDR,B group was shown to be closely affiliated to ..
  4. Takeshima S, Matsumoto Y, Chen J, Yoshida T, Mukoyama H, Aida Y. Evidence for cattle major histocompatibility complex (BoLA) class II DQA1 gene heterozygote advantage against clinical mastitis caused by Streptococci and Escherichia species. Tissue Antigens. 2008;72:525-31 pubmed publisher
    ..four groups according to the bacterial species that caused the mastitis (Staphylococcus aureus, Streptococci, Escherichia, and coagulase-negative staphylococci)...
  5. Mansfield C, James F, Craven M, Davies D, O Hara A, Nicholls P, et al. Remission of histiocytic ulcerative colitis in Boxer dogs correlates with eradication of invasive intramucosal Escherichia coli. J Vet Intern Med. 2009;23:964-9 pubmed publisher
    ..Recent reports of dramatic responses to enrofloxacin and the discovery of invasive Escherichia coli within the colonic mucosa of affected Boxer dogs support an infectious etiology.
  6. Lau C, Ishida H, Liu Z, Vogel H. Solution structure of Escherichia coli FeoA and its potential role in bacterial ferrous iron transport. J Bacteriol. 2013;195:46-55 pubmed publisher
    ..The Feo system is a bacterial ferrous iron transport system first discovered in Escherichia coli K-12. It consists of three genes, feoA, feoB, and feoC (yhgG)...
  7. Smajs D, Karpathy S, Smarda J, Weinstock G. Colicins produced by the Escherichia fergusonii strains closely resemble colicins encoded by Escherichia coli. FEMS Microbiol Lett. 2002;208:259-62 pubmed
    Plasmid DNA of six Escherichia fergusonii colicinogenic strains (three producers of colicin E1, two of Ib and one of Ia) was isolated and the colicin-encoding regions of the corresponding Col plasmids were sequenced...
  8. Opalka N, Mooney R, Richter C, Severinov K, Landick R, Darst S. Direct localization of a beta-subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase. Proc Natl Acad Sci U S A. 2000;97:617-22 pubmed
    To identify the location of a domain of the beta-subunit of Escherichia coli RNA polymerase (RNAP) on the three-dimensional structure, we developed a method to tag a nonessential surface of the multisubunit enzyme with a protein density ..
  9. Dahl K, Barry J, Debiasi R. Escherichia hermannii infection of a cephalohematoma: case report, review of the literature, and description of a novel invasive pathogen. Clin Infect Dis. 2002;35:e96-8 pubmed
    We describe a neonate with bacterial infection of a cephalohematoma by Escherichia hermannii and with meningitis. We review the literature on infected cephalohematomas and E...

More Information

Publications90

  1. Smarda J, Smajs D, Lhotová H. Three recently acknowledged Escherichia species strikingly differ in the incidence of bacteriocinogenic and lysogenic strains. J Basic Microbiol. 2002;42:429-33 pubmed
    ..of bacteriocinogeny and lysogeny was followed in bacteria of 3 recently acknowledged species of the genus Escherichia: E. hermanii, E. vulneris and E. fergusonii. Almost all of the strains examined were of human origin...
  2. Yamanaka T, Sumita Sasazaki Y, Sugimori C, Matsumoto Mashimo C, Yamane K, Mizukawa K, et al. Biofilm-like structures and pathogenicity of Escherichia hermannii YS-11, a clinical isolate from a persistent apical periodontitis lesion. FEMS Immunol Med Microbiol. 2010;59:456-65 pubmed publisher
    b>Escherichia hermannii, formerly classified as enteric group 11 of Escherichia coli, is considered to be nonpathogenic. In this report, we described some of the pathogenic properties of a viscous material-producing E...
  3. Yoshida Y, Sugiyama S, Oyamada T, Yokoyama K, Makino K. Identification and characterization of novel phosphate regulon genes, ecs0540-ecs0544, in Escherichia coli O157:H7. Mol Genet Genomics. 2010;284:197-205 pubmed publisher
    In response to environmental phosphate limitation, the transcriptional activator PhoB of Escherichia coli (E. coli) activates transcription of the phosphate regulon (pho regulon) genes that are involved in phosphate utilization...
  4. Lubitz S, Weiner J. The Escherichia coli ynfEFGHI operon encodes polypeptides which are paralogues of dimethyl sulfoxide reductase (DmsABC). Arch Biochem Biophys. 2003;418:205-16 pubmed
    The ynfEFGHI operon is a paralogue of the Escherichia coli dmsABC operon. ynfE and ynfF are paralogues of dmsA. ynfG and ynfH are paralogues of dmsB and dmsC, respectively. YnfI (dmsD) has no dms paralogue...
  5. Abbott S, O Connor J, Robin T, Zimmer B, Janda J. Biochemical properties of a newly described Escherichia species, Escherichia albertii. J Clin Microbiol. 2003;41:4852-4 pubmed
    Five strains of a newly described Escherichia species, Escherichia albertii, were extensively characterized by conventional biochemical methods and by commercial identification panels. E...
  6. Hyma K, Lacher D, Nelson A, Bumbaugh A, Janda J, Strockbine N, et al. Evolutionary genetics of a new pathogenic Escherichia species: Escherichia albertii and related Shigella boydii strains. J Bacteriol. 2005;187:619-28 pubmed
    ..rabbits and causes epithelial damage similar to the attachment and effacement associated with enteropathogenic Escherichia coli. Subsequent studies identified similar H...
  7. Sergiev P, Serebryakova M, Bogdanov A, Dontsova O. The ybiN gene of Escherichia coli encodes adenine-N6 methyltransferase specific for modification of A1618 of 23 S ribosomal RNA, a methylated residue located close to the ribosomal exit tunnel. J Mol Biol. 2008;375:291-300 pubmed
    N(6)-Methyladenosine 1618 of Escherichia coli 23 S rRNA is located in a cluster of modified nucleotides 12 A away from the nascent peptide tunnel of the ribosome...
  8. Ooka T, Seto K, Kawano K, Kobayashi H, Etoh Y, Ichihara S, et al. Clinical significance of Escherichia albertii. Emerg Infect Dis. 2012;18:488-92 pubmed publisher
    Discriminating Escherichia albertii from other Enterobacteriaceae is difficult. Systematic analyses showed that E...
  9. Mahapatra S, Mahapatra A. Escherichia fergusonii: an emerging pathogen in South Orissa. Indian J Med Microbiol. 2005;23:204 pubmed
  10. Stock I, Rahman M, Sherwood K, Wiedemann B. Natural antimicrobial susceptibility patterns and biochemical identification of Escherichia albertii and Hafnia alvei strains. Diagn Microbiol Infect Dis. 2005;51:151-63 pubmed
    Bangladeshi diarrheagenic Hafnia alvei-like strains have been described recently as the new species Escherichia albertii (Int J Syst Evolut Microbiol. 2003;53:807-810). The natural susceptibility of 21 E. albertii and 76 H...
  11. Pennycott T, Cinderey R, Park A, Mather H, Foster G. Salmonella enterica subspecies enterica serotype Typhimurium and Escherichia coli O86 in wild birds at two garden sites in south-west Scotland. Vet Rec. 2002;151:563-7 pubmed
    ..E coli O86 was not recovered from the faeces collected from either site, but was isolated from a bird that died from trauma at site A...
  12. Itoh N, Kawanami T, Nitta C, Iwata N, Usami S, Abe Y, et al. Characterization of pNI10 plasmid in Pseudomonas, and the construction of an improved Escherichia and Pseudomonas shuttle vector, pNUK73. Appl Microbiol Biotechnol. 2003;61:240-6 pubmed
    ..A fragment of about 2.1 kb of pNI10 was essential for replication in Escherichia coli and Pseudomonas fluorescens...
  13. Bidlack J, Silverman P. An active type IV secretion system encoded by the F plasmid sensitizes Escherichia coli to bile salts. J Bacteriol. 2004;186:5202-9 pubmed
    F(+) strains of Escherichia coli infected with donor-specific bacteriophage such as M13 are sensitive to bile salts. We show here that this sensitivity has two components...
  14. Janda J, Abbott S, Albert M. Prototypal diarrheagenic strains of Hafnia alvei are actually members of the genus Escherichia. J Clin Microbiol. 1999;37:2399-401 pubmed
    ..alvei with a commercial identification system and were reported to contain the eae gene of enteropathogenic Escherichia coli...
  15. Oaks J, Besser T, Walk S, Gordon D, Beckmen K, Burek K, et al. Escherichia albertii in wild and domestic birds. Emerg Infect Dis. 2010;16:638-46 pubmed publisher
    b>Escherichia albertii has been associated with diarrhea in humans but not with disease or infection in animals. However, in December 2004, E...
  16. Walk S, Alm E, Gordon D, Ram J, Toranzos G, Tiedje J, et al. Cryptic lineages of the genus Escherichia. Appl Environ Microbiol. 2009;75:6534-44 pubmed publisher
    Extended multilocus sequence typing (MLST) analysis of atypical Escherichia isolates was used to identify five novel phylogenetic clades (CI to CV) among isolates from environmental, human, and animal sources...
  17. Gurunathan S, Han J, Eppakayala V, Jeyaraj M, Kim J. An environmentally friendly approach to the reduction of graphene oxide by Escherichia fergusoni. J Nanosci Nanotechnol. 2013;13:2091-8 pubmed
    ..Herein, we developed a green, simple and cost effective approach to produce graphene by using an Escherichia fergusoni as a reducing agent...
  18. Wragg P, La Ragione R, Best A, Reichel R, Anjum M, Mafura M, et al. Characterisation of Escherichia fergusonii isolates from farm animals using an Escherichia coli virulence gene array and tissue culture adherence assays. Res Vet Sci. 2009;86:27-35 pubmed publisher
    b>Escherichia fergusonii has been associated with a wide variety of intestinal and extra-intestinal infections in both humans and animals but, despite strong circumstantial evidence, the degree to which the organism is responsible for the ..
  19. Gossert A, Bettendorff P, Puorger C, Vetsch M, Herrmann T, Glockshuber R, et al. NMR structure of the Escherichia coli type 1 pilus subunit FimF and its interactions with other pilus subunits. J Mol Biol. 2008;375:752-63 pubmed
    Type 1 pili from uropathogenic Escherichia coli strains mediate bacterial attachment to target receptors on the host tissue...
  20. Cursino L, Smajs D, Smarda J, Nardi R, Nicoli J, Chartone Souza E, et al. Exoproducts of the Escherichia coli strain H22 inhibiting some enteric pathogens both in vitro and in vivo. J Appl Microbiol. 2006;100:821-9 pubmed publisher
    The antagonistic activity of the Escherichia coli strain H22 against enteric bacteria was studied both in vitro and in vivo. ..
  21. Mihara Y, Ishikawa K, Suzuki E, Asano Y. Improving the pyrophosphate-inosine phosphotransferase activity of Escherichia blattae acid phosphatase by sequential site-directed mutagenesis. Biosci Biotechnol Biochem. 2004;68:1046-50 pubmed
    b>Escherichia blattae acid phosphatase/phosphotransferase (EB-AP/PTase) exhibits C-5'-position selective pyrophosphate-nucleoside phosphotransferase activity in addition to its intrinsic phosphatase...
  22. Sharma M, Kniel K, Derevianko A, Ling J, Bhagwat A. Sensitivity of Escherichia albertii, a potential food-borne pathogen, to food preservation treatments. Appl Environ Microbiol. 2007;73:4351-3 pubmed
    b>Escherichia albertii is a potential food-borne pathogen because of its documented ability to cause diarrheal disease by producing attachment and effacement lesions. Its tolerances to heat (56 degrees C), acid (pH 3...
  23. Andres S, Wiezer A, Bendfeldt H, Waschkowitz T, Toeche Mittler C, Daniel R. Insights into the genome of the enteric bacterium Escherichia blattae: cobalamin (B12) biosynthesis, B12-dependent reactions, and inactivation of the gene region encoding B12-dependent glycerol dehydratase by a new mu-like prophage. J Mol Microbiol Biotechnol. 2004;8:150-68 pubmed
    The enteric bacterium Escherichia blattae has been analyzed for the presence of cobalamin (B12) biosynthesis and B12-dependent pathways. Biochemical studies revealed that E. blattae synthesizes B12 de novo aerobically and anaerobically...
  24. Ishikawa K, Mihara Y, Gondoh K, Suzuki E, Asano Y. X-ray structures of a novel acid phosphatase from Escherichia blattae and its complex with the transition-state analog molybdate. EMBO J. 2000;19:2412-23 pubmed
    The structure of Escherichia blattae non-specific acid phosphatase (EB-NSAP) has been determined at 1.9 A resolution with a bound sulfate marking the phosphate-binding site. The enzyme is a 150 kDa homohexamer...
  25. Oh S, Buddenborg S, Yoder Himes D, Tiedje J, Konstantinidis K. Genomic diversity of Escherichia isolates from diverse habitats. PLoS ONE. 2012;7:e47005 pubmed publisher
    Our understanding of the Escherichia genus is heavily biased toward pathogenic or commensal isolates from human or animal hosts. Recent studies have recovered Escherichia isolates that persist, and even grow, outside these hosts...
  26. Wang X, Ji S, Jeon H, Lee Y, Lim H. Two-level inhibition of galK expression by Spot 42: Degradation of mRNA mK2 and enhanced transcription termination before the galK gene. Proc Natl Acad Sci U S A. 2015;112:7581-6 pubmed publisher
    The Escherichia coli gal operon has the structure Pgal-galE-galT-galK-galM. During early log growth, a gradient in gene expression, named type 2 polarity, is established, as follows: galE > galT > galK > galM...
  27. Ruiz V, Bersano J, Carvalho A, Catroxo M, Chiebao D, Gregori F, et al. Case-control study of pathogens involved in piglet diarrhea. BMC Res Notes. 2016;9:22 pubmed publisher
    ..Several pathogenic agents such as Campylobacter spp., Clostridium perfringens, Escherichia coli, Salmonella spp...
  28. Schmidt K, Peterson N, Kustusch R, Wissel M, Graham B, Phillips G, et al. A predicted ABC transporter, FtsEX, is needed for cell division in Escherichia coli. J Bacteriol. 2004;186:785-93 pubmed
    ..Early work implicated FtsEX in cell division in Escherichia coli, but this was subsequently challenged, in part because the division defects in ftsEX mutants are often ..
  29. Wu Z, Zheng R, Zheng Y. Exploitation and characterization of three versatile amidase super family members from Delftia tsuruhatensis ZJB-05174. Enzyme Microb Technol. 2016;86:93-102 pubmed publisher
    ..5h at a substrate loading of 100g/L by 0.5g/L of Escherichia coli cells. On the other hand, nitrilase superfamily amidase only hydrolyzed aliphatic amides...
  30. Kim H, Harshey R. A Diguanylate Cyclase Acts as a Cell Division Inhibitor in a Two-Step Response to Reductive and Envelope Stresses. MBio. 2016;7: pubmed publisher
    ..and then dynamically relocates to the division site to arrest cell division in response to envelope stress in Escherichia coli YfiN localizes to the Z ring by interacting with early division proteins and stalls cell division by ..
  31. Ohshida T, Hayashi J, Satomura T, Kawakami R, Ohshima T, Sakuraba H. First characterization of extremely halophilic 2-deoxy-D-ribose-5-phosphate aldolase. Protein Expr Purif. 2016;126:62-68 pubmed publisher
    ..A gene encoding DERA from the extreme halophilic archaeon, Haloarcula japonica, was overexpressed in Escherichia coli...
  32. Paz J, Contreras C, Munguía A, Aguilar C, Inungaray M. Phenolic content and antibacterial activity of extracts of Hamelia patens obtained by different extraction methods. Braz J Microbiol. 2018;49:656-661 pubmed publisher
    ..Mass Spectrometry, and the antimicrobial activity was studied from the inhibitory effect of each extract for Escherichia coli, Staphylococcus aureus, Salmonella typhi and S...
  33. Sharma M, Dash P, Sahoo P, Dixit A. Th2-biased immune response and agglutinating antibodies generation by a chimeric protein comprising OmpC epitope (323-336) of Aeromonas hydrophila and LTB. Immunol Res. 2018;66:187-199 pubmed publisher
    ..hydrophila identified using in silico tools, in conjugation with heat-labile enterotoxin B (LTB) subunit of Escherichia coli as a carrier protein...
  34. Ghosh A, Dutta D, Bandyopadhyay K, Parrack P. Characterization of the autophosphorylation property of HflX, a ribosome-binding GTPase from Escherichia coli. FEBS Open Bio. 2016;6:651-9 pubmed publisher
    b>Escherichia coli HflX belongs to the widely distributed but poorly characterized HflX family of translation factor-related GTPases that is conserved from bacteria to humans...
  35. Tunyapanit W, Chelae S, Laoprasopwattana K. Does ciprofloxacin prophylaxis during chemotherapy induce intestinal microflora resistance to ceftazidime in children with cancer?. J Infect Chemother. 2018;24:358-362 pubmed publisher
    ..MIC) of ceftazidime, the commonly used empirical antibiotic in patients with febrile neutropenia, in Escherichia coli and Klebsiella pneumoniae isolated from the intestinal microflora of pediatric patients with cancer, who ..
  36. Sinclair C, Jenkins C, Warburton F, Adak G, Harris J. Investigation of a national outbreak of STEC Escherichia coli O157 using online consumer panel control methods: Great Britain, October 2014. Epidemiol Infect. 2017;145:864-871 pubmed publisher
    In October 2014, Public Health England (PHE) identified cases of Shiga toxin-producing Escherichia coli (STEC) serogroup O157 sharing a multiple locus variable-number tandem repeat analysis (MLVA) profile...
  37. Chon J, Kim Y, Kim H, Kim D, Kim H, Song K, et al. Evaluation of cephamycins as supplements to selective agar for detecting Campylobacter spp. in chicken carcass rinses. Int J Food Microbiol. 2016;223:75-8 pubmed publisher
    ..the distribution of cefoperazone-resistant bacteria such as extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli is increasing...
  38. Lin B, Fan K, Zhao J, Ji J, Wu L, Yang K, et al. Reconstitution of TCA cycle with DAOCS to engineer Escherichia coli into an efficient whole cell catalyst of penicillin G. Proc Natl Acad Sci U S A. 2015;112:9855-9 pubmed publisher
    ..Here, a whole-cell biocatalytic process based on an engineered Escherichia coli strain expressing 2-oxoglutarate-dependent deacetoxycephalosporin C synthase (DAOCS) for converting ..
  39. Sikora A, Maciejewska A, Poznański J, Pilżys T, Marcinkowski M, Dylewska M, et al. Effects of changes in intracellular iron pool on AlkB-dependent and AlkB-independent mechanisms protecting E.coli cells against mutagenic action of alkylating agent. Mutat Res. 2015;778:52-60 pubmed publisher
    An Escherichia coli hemH mutant accumulates protoporphyrin IX, causing photosensitivity of cells to visible light. Here, we have shown that intracellular free iron in hemH mutants is double that observed in hemH(+) strain...
  40. Bandyopadhyay S, Das S. Functional analysis of ars gene cluster of Pannonibacter indicus strain HT23(T) (DSM 23407(T)) and identification of a proline residue essential for arsenate reductase activity. Appl Microbiol Biotechnol. 2016;100:3235-44 pubmed publisher
    ..Heterologous expression of arsenic inducible ars gene cluster conferred arsenic resistance to Escherichia coli ∆ars mutant strain AW3110. The recombinant ArsC was purified and assayed...
  41. Tan Z, Black W, Yoon J, Shanks J, Jarboe L. Improving Escherichia coli membrane integrity and fatty acid production by expression tuning of FadL and OmpF. Microb Cell Fact. 2017;16:38 pubmed publisher
    ..3 g/L. These results emphasize the importance of membrane proteins for maintaining membrane integrity and production of biorenewables, such as fatty acids, which expands the targets for membrane engineering. ..
  42. Throne Holst M, Thony Meyer L, Hederstedt L. Escherichia coli ccm in-frame deletion mutants can produce periplasmic cytochrome b but not cytochrome c. FEBS Lett. 1997;410:351-5 pubmed
    b>Escherichia coli CcmA, CcmB and CcmC polypeptides are required for cytochrome c synthesis and are thought to constitute the subunits of an ABC-type transporter as judged from sequence data...
  43. Okuda A, Matsusaki M, Masuda T, Urade R. Identification and characterization of GmPDIL7, a soybean ER membrane-bound protein disulfide isomerase family protein. FEBS J. 2017;284:414-428 pubmed publisher
    ..The redox potential of recombinant GmPDIL7 expressed in Escherichia coli was -187 mV, indicating that GmPDIL7 could oxidize unfolded proteins...
  44. Zhang M, Yu X, Swapna G, Xiao R, Zheng H, Sha C, et al. Efficient production of (2)H, (13)C, (15)N-enriched industrial enzyme Rhizopus chinensis lipase with native disulfide bonds. Microb Cell Fact. 2016;15:123 pubmed publisher
    ..b>Escherichia coli and Pichia pastoris are two of the most popular expression systems for producing isotope-enriched, ..
  45. Fu Y, Deering A, Bhunia A, Yao Y. Biofilm of Escherichia coli O157:H7 on cantaloupe surface is resistant to lauroyl arginate ethyl and sodium hypochlorite. Int J Food Microbiol. 2017;260:11-16 pubmed publisher
    Biofilms formed by Escherichia coli O157:H7 on cantaloupe rind were characterized in this study. Cantaloupe rind pieces inoculated with E...
  46. Miretti M, Clementi R, Tempesti T, Baumgartner M. Photodynamic inactivation of multiresistant bacteria (KPC) using zinc(II)phthalocyanines. Bioorg Med Chem Lett. 2017;27:4341-4344 pubmed publisher
    ..Their photokilling activity was tested on Escherichia coli ATCC 25922 and Klebsiella pneumoniae Carbapenemase (KPC)-producing...
  47. Iverson S, Haddock T, Beal J, Densmore D. CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology. ACS Synth Biol. 2016;5:99-103 pubmed publisher
    ..MoClo protocols to enable rapid one-pot, multipart assembly, combinatorial design, and expression tuning in Escherichia coli...
  48. Marschal M, Bachmaier J, Autenrieth I, Oberhettinger P, Willmann M, Peter S. Evaluation of the Accelerate Pheno System for Fast Identification and Antimicrobial Susceptibility Testing from Positive Blood Cultures in Bloodstream Infections Caused by Gram-Negative Pathogens. J Clin Microbiol. 2017;55:2116-2126 pubmed publisher
    ..resistance was correctly detected in blood culture specimens with extended-spectrum beta-lactamase-producing Escherichia coli (n = 7) and multidrug-resistant Pseudomonas aeruginosa (n = 3) strains...
  49. Ghassemi F, Madadgar O, Roohvand F, Rasekhian M, Etemadzadeh M, Boroujeni G, et al. [Translational efficiency of BVDV IRES and EMCV IRES for T7 RNA polymerase driven cytoplasmic expression in mammalian cell lines]. Mol Biol (Mosk). 2017;51:324-333 pubmed publisher
    ..To provide for the expression of T7 RNA polymerase, the corresponding gene was isolated from Escherichia coli and inserted into pCDNA3.1-Hygro(+)...
  50. Castanheira M, Mendes R, Jones R, Sader H. Changes in the Frequencies of ?-Lactamase Genes among Enterobacteriaceae Isolates in U.S. Hospitals, 2012 to 2014: Activity of Ceftazidime-Avibactam Tested against ?-Lactamase-Producing Isolates. Antimicrob Agents Chemother. 2016;60:4770-7 pubmed publisher
    ..These rates were similar over time (13.2 to 13.9%); however, differences among Escherichia coli (12.7 and 15.1% in 2012 and 2014; P = 0.007) and Klebsiella pneumoniae (18.9 and 15...
  51. Wei Y, Gao Z, Zhang H, Dong Y. Structural characterizations of phage antitoxin Dmd and its interactions with bacterial toxin RnlA. Biochem Biophys Res Commun. 2016;472:592-7 pubmed publisher
    ..A type II TA system RnlA-RnlB from Escherichia coli is associated with phage-resistance...
  52. Xie M, Chen G, Wan P, Dai Z, Hu B, Chen L, et al. Modulating Effects of Dicaffeoylquinic Acids from Ilex kudingcha on Intestinal Microecology in Vitro. J Agric Food Chem. 2017;: pubmed publisher
    ..the relative abundances of Alistipes, Bacteroides, Bifidobacterium, Butyricimonas, Clostridium sensu stricto, Escherichia/Shigella, Parasutterella, Romboutsia, Oscillibacter, Veillonella, Phascolarctobacterium, Lachnospiracea ..
  53. Hagelueken G, Duthie F, Florin N, Schubert E, Schiemann O. Expression, purification and spin labelling of the ferrous iron transporter FeoB from Escherichia coli BL21 for EPR studies. Protein Expr Purif. 2015;114:30-6 pubmed publisher
    ..we designed protocols to express and purify both the cytosolic domain of FeoB (NFeoB) and full-length FeoB from Escherichia coli BL21 in purity, quantity and quality needed for EPR studies. Since FeoB from E...
  54. Luo C, Tsementzi D, Kyrpides N, Konstantinidis K. Individual genome assembly from complex community short-read metagenomic datasets. ISME J. 2012;6:898-901 pubmed publisher
    ..We also provide examples of how to detect intrapopulation structure in metagenomic datasets and estimate the type and frequency of errors in assembled genes and contigs from datasets of varied species complexity...
  55. Ingle D, Clermont O, Skurnik D, Denamur E, Walk S, Gordon D. Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp. Appl Environ Microbiol. 2011;77:2695-700 pubmed publisher
    In order to better understand the ecological and virulence characteristics of the various clades of Escherichia, in vitro and in vivo experiments were undertaken...
  56. Pasumarthi R, Chandrasekaran S, Mutnuri S. Biodegradation of crude oil by Pseudomonas aeruginosa and Escherichia fergusonii isolated from the Goan coast. Mar Pollut Bull. 2013;76:276-82 pubmed publisher
    ..Pseudomonas aeruginosa and Escherichia fergusonii were isolated from a crude oil-contaminated sediment sample using diesel oil as the sole carbon ..
  57. Rahman M, Akter S, Azmuda N, Sultana M, Weill F, Khan S, et al. Serological cross-reaction between O-antigens of Shigella dysenteriae type 4 and an environmental Escherichia albertii isolate. Curr Microbiol. 2013;67:590-5 pubmed publisher
    ..with phylogenetic analysis of the 16S rRNA gene and multi-locus sequence analysis, identified the isolate as Escherichia albertii. rfb-RFLP of DM104, revealed a profile different from that of S. dysenteriae type 4...
  58. Feeney S, Ryan J, Kilcoyne M, Joshi L, Hickey R. Glycomacropeptide Reduces Intestinal Epithelial Cell Barrier Dysfunction and Adhesion of Entero-Hemorrhagic and Entero-Pathogenic Escherichia coli in Vitro. Foods. 2017;6: pubmed publisher
    ..In this study, we investigated the ability of GMP to inhibit the adhesion of a variety of pathogenic Escherichia coli strains to HT-29 and Caco-2 intestinal cell lines, given the importance of E...
  59. Motwani M, Newson J, Kwong S, Richard Loendt A, Colas R, Dalli J, et al. Prolonged immune alteration following resolution of acute inflammation in humans. PLoS ONE. 2017;12:e0186964 pubmed publisher
    ..Using a human model of acute inflammation driven by intradermal UV killed Escherichia coli, we found that bacteria and granulocyte clearance as well as pro-inflammatory cytokine catabolism occurred ..
  60. Erickson D, Schink S, Patsalo V, Williamson J, Gerland U, Hwa T. A global resource allocation strategy governs growth transition kinetics of Escherichia coli. Nature. 2017;551:119-123 pubmed publisher
    ..Our approach does not rely on kinetic parameters, and therefore points to a theoretical framework for describing a broad range of such kinetic processes without detailed knowledge of the underlying biochemical reactions...
  61. Mohanty S, Chandra S, Dhawan B, Kapil A, Das B. Meningitis due to Escherichia vulneris. Neurol India. 2005;53:122-3 pubmed
  62. Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner F. TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinformatics. 2004;5:163 pubmed
    ..With this application in mind, the TETRA web-service and the TETRA stand-alone program have been developed, both of which automate the task of comparative tetranucleotide frequency analysis...
  63. Brandal L, Tunsjø H, Ranheim T, Løbersli I, Lange H, Wester A. Shiga toxin 2a in Escherichia albertii. J Clin Microbiol. 2015;53:1454-5 pubmed publisher
  64. Jacobs W, Shakhnovich E. Evidence of evolutionary selection for cotranslational folding. Proc Natl Acad Sci U S A. 2017;114:11434-11439 pubmed publisher
    ..native-centric model of cotranslational folding account for the majority of these loci across more than 500 Escherichia coli proteins...
  65. Tasnádi G, Zechner M, Hall M, Baldenius K, Ditrich K, Faber K. Investigation of acid phosphatase variants for the synthesis of phosphate monoesters. Biotechnol Bioeng. 2017;114:2187-2195 pubmed publisher
    ..Variants of PhoC-Mm from Morganella morganii and NSAP-Eb from Escherichia blattae were studied for their ability to maintain a high product level in the transphosphorylation of various ..
  66. Chowdhury F, Rahman M, Sarkar M, Rabbi F, Khan S, Ahsan C, et al. Protection against shigellosis caused by Shigella dysenteriae serotype 4 in guinea pigs using Escherichia albertii DM104 as a live vaccine candidate strain. Acta Microbiol Immunol Hung. 2017;64:151-164 pubmed publisher
    Recently, we reported the induction of protective immunity by environmental Escherichia albertii strain DM104 against Shigella dysenteriae in guinea pig model...
  67. Damodar R, You S, Chou H. Study the self cleaning, antibacterial and photocatalytic properties of TiO2 entrapped PVDF membranes. J Hazard Mater. 2009;172:1321-8 pubmed publisher
    ..The TiO(2) entrapped PVDF membranes (0-4% PVDF/TiO(2)) were tested for its antibacterial property by using Escherichia Coliform (E...
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    ..The minimal replicon of pWS was stable in C. basilensis WS without selection. A conjugative C. basilensis/Escherichia coli shuttle vector, pCB5, was constructed using the minimal replicon of pWS...
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    ..To study the extraction technique for the flavonoids from Glycyrrhiza inflata and their bacteriostatic bioactivities...
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    ..by the toxic and two were administrated by the nontoxic doses of AgNPs produced by Bacillus cereus and Escherichia fergusonii...
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    ..of these bacteria revealed them to be members of the genera Exiguobacterium, Aeromonas, Bacillus, Pseudomonas, Escherichia, and Acinetobacter. Two isolates, Exiguobacterium sp. WK6 and Aeromonas sp...