gram positive endospore forming rods


Summary: Rod-shaped bacteria that form endospores and are gram-positive. Representative genera include BACILLUS and CLOSTRIDIUM.

Top Publications

  1. Baek S, Im W, Oh H, Lee J, Oh H, Lee S. Brevibacillus ginsengisoli sp. nov., a denitrifying bacterium isolated from soil of a ginseng field. Int J Syst Evol Microbiol. 2006;56:2665-9 pubmed
    ..Strain Gsoil 3088T, therefore, represents a novel species of the genus Brevibacillus, for which the name Brevibacillus ginsengisoli sp. nov. is proposed. The type strain is Gsoil 3088T (=KCTC 13938T=LMG 23403T). ..
  2. Allan R, Lebbe L, Heyrman J, de Vos P, Buchanan C, Logan N. Brevibacillus levickii sp. nov. and Aneurinibacillus terranovensis sp. nov., two novel thermoacidophiles isolated from geothermal soils of northern Victoria Land, Antarctica. Int J Syst Evol Microbiol. 2005;55:1039-50 pubmed
    ..nov. and Aneurinibacillus terranovensis sp. nov. are proposed for the novel taxa; the type strains are Logan B-1657(T) (= LMG 22481(T) = CIP 108307(T)) and Logan B-1599(T) (LMG 22483(T) = CIP 108308(T)), respectively...
  3. García Fraile P, Velázquez E, Mateos P, Martínez Molina E, Rivas R. Cohnella phaseoli sp. nov., isolated from root nodules of Phaseolus coccineus in Spain, and emended description of the genus Cohnella. Int J Syst Evol Microbiol. 2008;58:1855-9 pubmed publisher
    ..The results of this study suggest that isolate GSPC1 T should be classified within a novel Cohnella species, for which the name Cohnella phaseoli sp. nov. is proposed, with strain GSPC1T (=LMG 24086T =DSM 19269T) as the type strain. ..
  4. Sung M, Kim H, Bae J, Rhee S, Jeon C, Kim K, et al. Geobacillus toebii sp. nov., a novel thermophilic bacterium isolated from hay compost. Int J Syst Evol Microbiol. 2002;52:2251-5 pubmed
    ..nov. is proposed. The type strain is strain SK-1(T) (= KCTC 0306BP(T) - DSM 14590(T)). ..
  5. Mayer F, Gottschalk G. The bacterial cytoskeleton and its putative role in membrane vesicle formation observed in a Gram-positive bacterium producing starch-degrading enzymes. J Mol Microbiol Biotechnol. 2003;6:127-32 pubmed
  6. Song L, Dong X. Hydrogenoanaerobacterium saccharovorans gen. nov., sp. nov., isolated from H2-producing UASB granules. Int J Syst Evol Microbiol. 2009;59:295-9 pubmed publisher
    ..nov., sp. nov. is proposed; the type strain of the type species is SW512(T) (=AS 1.5070(T)=JCM 14861(T)). ..
  7. Guo X, You X, Liu L, Zhang J, Liu S, Jiang C. Alicyclobacillus aeris sp. nov., a novel ferrous- and sulfur-oxidizing bacterium isolated from a copper mine. Int J Syst Evol Microbiol. 2009;59:2415-20 pubmed publisher
    ..nov. is proposed; the type strain is ZJ-6(T) (=CGMCC 1.7072(T)=NBRC 104953(T)). ..
  8. Sinigaglia M, Corbo M, Altieri C, Campaniello D, D Amato D, Bevilacqua A. Combined effects of temperature, water activity, and pH on Alicyclobacillus acidoterrestris spores. J Food Prot. 2003;66:2216-21 pubmed
    ..999 and 0.817 for 2- and 7-day models, respectively, were obtained, indicating that the models were "fail safe." Results indicated that the model provided reliable predictions of growth of A. acidoterrestris spores. ..
  9. Wu C, Liu X, Dong X. Syntrophomonas erecta subsp. sporosyntropha subsp. nov., a spore-forming bacterium that degrades short chain fatty acids in co-culture with methanogens. Syst Appl Microbiol. 2006;29:457-62 pubmed
    ..Therefore, a new subspecies of S. erecta, S. erecta subsp. sporosyntropha was proposed. The type strain was 5-3-Z(T) (=CGMCC1.5032(T)=JCM13344(T)). ..

More Information

Publications105 found, 100 shown here

  1. Lund M, Bjerrum L, Pedersen K. Quantification of Faecalibacterium prausnitzii- and Subdoligranulum variabile-like bacteria in the cecum of chickens by real-time PCR. Poult Sci. 2010;89:1217-24 pubmed publisher
    ..Furthermore, results indicate that the poultry farm environment plays a role in recruitment and development of these bacteria in the intestinal microflora. ..
  2. Ma Y, Zhang J, Chen S. Paenibacillus zanthoxyli sp. nov., a novel nitrogen-fixing species isolated from the rhizosphere of Zanthoxylum simulans. Int J Syst Evol Microbiol. 2007;57:873-7 pubmed
    ..Therefore, the five novel strains are considered to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus zanthoxyli sp. nov. is proposed. The type strain is JH29(T) (=CCBAU 10243(T)=DSM 18202(T))...
  3. Xing D, Ren N, Rittmann B. Genetic diversity of hydrogen-producing bacteria in an acidophilic ethanol-H2-coproducing system, analyzed using the [Fe]-hydrogenase gene. Appl Environ Microbiol. 2008;74:1232-9 pubmed
    ..Thus, the microbial ecology of mesophilic and acidophilic H2 fermentation involves many other bacteria in addition to Clostridium and Enterobacter. ..
  4. Yang S, Liu H, Liu R, Zhang K, Lai R. Saccharibacillus kuerlensis sp. nov., isolated from a desert soil. Int J Syst Evol Microbiol. 2009;59:953-7 pubmed publisher
    ..nov. is proposed. The type strain is HR1(T) (=KCTC 13182(T) =JCM 14865(T) =CGMCC 1.6964(T)). ..
  5. Pikuta E, Lysenko A, Suzina N, Osipov G, Kuznetsov B, Tourova T, et al. Desulfotomaculum alkaliphilum sp. nov., a new alkaliphilic, moderately thermophilic, sulfate-reducing bacterium. Int J Syst Evol Microbiol. 2000;50 Pt 1:25-33 pubmed
    ..Analysis of the 16S rDNA sequence allowed strain S1T (= DSM 12257T) to be classified as a representative of a new species of the genus Desulfotomaculum, Desulfotomaculum alkaliphilum sp. nov...
  6. Kaksonen A, Spring S, Schumann P, Kroppenstedt R, Puhakka J. Desulfurispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming sulfate-reducer isolated from a sulfidogenic fluidized-bed reactor. Int J Syst Evol Microbiol. 2007;57:1089-94 pubmed
    ..nov., sp. nov. is proposed. The type strain of Desulfurispora thermophila is RA50E1(T) (=DSM 16022(T)=JCM 14018(T)). ..
  7. Kerwin S. Toward bioengineering anticancer drugs. Chem Biol. 2002;9:956-8 pubmed
    ..These discoveries lay the foundations for engineering this pathway to generate improved anticancer drugs. ..
  8. Xie C, Yokota A. Paenibacillus terrigena sp. nov., isolated from soil. Int J Syst Evol Microbiol. 2007;57:70-2 pubmed
    ..Therefore, on the basis of these data, a novel species of the genus Paenibacillus, Paenibacillus terrigena sp. nov., is proposed. The type strain is A35(T) (=IAM 15291(T)=CCTCC AB206026(T)). ..
  9. Park M, Kim H, An D, Yang H, Oh S, Chung H, et al. Paenibacillus soli sp. nov., a xylanolytic bacterium isolated from soil. Int J Syst Evol Microbiol. 2007;57:146-50 pubmed
    ..nov. is proposed. The type strain is DCY03(T) (=KCTC 13010(T)=LMG 23604(T)). ..
  10. Gillard M, Charriere J, Belloy L. Distribution of Paenibacillus larvae spores inside honey bee colonies and its relevance for diagnosis. J Invertebr Pathol. 2008;99:92-5 pubmed publisher
    ..larvae. Based on these results, we recommend investigating colonies by testing bee samples from the brood nest, edge frame or honey chamber for P. larvae spores. ..
  11. Bothe H, Møller Jensen K, Mergel A, Larsen J, Jørgensen C, Bothe H, et al. Heterotrophic bacteria growing in association with Methylococcus capsulatus (Bath) in a single cell protein production process. Appl Microbiol Biotechnol. 2002;59:33-9 pubmed
    ..The heterotrophic bacteria do not have the genetic capability to produce either the haemolytic enterotoxin complex HBL or non-haemolytic enterotoxin...
  12. Pikuta E, Itoh T, Krader P, Tang J, Whitman W, Hoover R. Anaerovirgula multivorans gen. nov., sp. nov., a novel spore-forming, alkaliphilic anaerobe isolated from Owens Lake, California, USA. Int J Syst Evol Microbiol. 2006;56:2623-9 pubmed
    ..Therefore, strain SCAT is considered to represent a novel species of a new genus, Anaerovirgula multivorans gen. nov., sp. nov., in clostridial cluster XI. The type strain is SCAT (=ATCC BAA-1084T=JCM 12857T=DSM 17722T=CIP 107910T). ..
  13. Nelson D, Glawe A, Labeda D, Cann I, Mackie R. Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra. Int J Syst Evol Microbiol. 2009;59:1708-14 pubmed publisher
    ..nov. are proposed, respectively. The type strain of Paenibacillus tundrae sp. nov. is A10b(T) (=NRRL B-51094(T)=DSM 21291(T)). The type strain of Paenibacillus xylanexedens sp. nov. is B22a(T) (=NRRL B-51090(T)=DSM 21292(T)). ..
  14. Tanaka H, Noguchi H, Abe I. 1-methylidenesqualene and 25-methylidenesqualene as active-site probes for bacterial squalene:hopene cyclase. Org Lett. 2004;6:803-6 pubmed
    ..reaction: see text] ..
  15. Bastos E, Simone M, Jorge D, Soares A, Spivak M. In vitro study of the antimicrobial activity of Brazilian propolis against Paenibacillus larvae. J Invertebr Pathol. 2008;97:273-81 pubmed
    ..Due to the evolution of resistance of P. larvae to conventional antibiotic treatments, this research is an important first step in identifying possible new active compounds to treat AFB in honey bee colonies. ..
  16. Suominen I, Sproer C, Kampfer P, Rainey F, Lounatmaa K, Salkinoja Salonen M. Paenibacillus stellifer sp. nov., a cyclodextrin-producing species isolated from paperboard. Int J Syst Evol Microbiol. 2003;53:1369-74 pubmed
    ..Based on phylogenetic data and phenotypic and chemotaxonomic characteristics, it is proposed that the isolates represent a novel species, Paenibacillus stellifer sp. nov., with IS 1(T) (=DSM 14472(T)=CCUG 45566(T)) as the type strain. ..
  17. Duda V, Suzina N, Severina L, Bogdanova T, Tsaplina I, Karavaiko G. Ultrastructural organization of Alicyclobacillus tolerans strain K1T cells. Arch Microbiol. 2006;185:63-8 pubmed
    ..Endospore coats displayed an intricate structure and consisted of three thick layers; the outer layer had an unusual fine structure; the exosporium was also found...
  18. Gern R, Furlan S, Ninow J, Jonas R. Screening for microorganisms that produce only endo-inulinase. Appl Microbiol Biotechnol. 2001;55:632-5 pubmed
    ..CDB 003 was the most suitable for endo-inulinase production, as this enzyme produced inulobiose as the principal substrate as well as inulo-oligosaccharides with polymerisation degrees of 3-5. ..
  19. Khianngam S, Akaracharanya A, Tanasupawat S, Lee K, Lee J. Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil. Int J Syst Evol Microbiol. 2009;59:564-8 pubmed publisher
    ..nov. (type strain S3-4A(T)=KCTC 13043(T)=PCU 275(T)=TISTR 1827(T)) and Paenibacillus nanensis sp. nov. (type strain MX2-3(T)=KCTC 13044(T)=PCU 276(T)=TISTR 1828(T)) are proposed. ..
  20. Chaban Y, Ubbink Kok T, Keegstra W, Lolkema J, Boekema E. Composition of the central stalk of the Na+-pumping V-ATPase from Caloramator fervidus. EMBO Rep. 2002;3:982-7 pubmed
    ..The presence of subunit C makes the central stalk substantially longer in comparison to the F-ATPases, in which the gamma subunit connects directly to F0. ..
  21. Thiemann V, Dönges C, Prowe S, Sterner R, Antranikian G. Characterisation of a thermoalkali-stable cyclodextrin glycosyltransferase from the anaerobic thermoalkaliphilic bacterium Anaerobranca gottschalkii. Arch Microbiol. 2004;182:226-35 pubmed
    ..The CGTase was stabilised against thermal inactivation by calcium ions and high substrate concentrations; and 5 mM of CaCl(2) shifted the apparent melting point of the enzyme from 60 degrees C to 69 degrees C. ..
  22. Bevilacqua A, Cibelli F, Corbo M, Sinigaglia M. Effects of high-pressure homogenization on the survival of Alicyclobacillus acidoterrestris in a laboratory medium. Lett Appl Microbiol. 2007;45:382-6 pubmed
    ..The results of our study will provide useful information on the sensitivity of an emerging spoilage micro-organism, such as A. acidoterrrestris, to HPH. ..
  23. Kim M, Seo H, Hwang T, Lee S, Park D. Characterization of exopolysaccharide (EPS) produced by Weissella hellenica SKkimchi3 isolated from kimchi. J Microbiol. 2008;46:535-41 pubmed publisher
    ..EPS suspension was not precipitated even by centrifugation at 10,000xg for 60 min, and EPS made the fermented milk and bacterial culture viscous. ..
  24. Plugge C, Balk M, Stams A. Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum subsp. nov., a thermophilic, syntrophic, propionate-oxidizing, spore-forming bacterium. Int J Syst Evol Microbiol. 2002;52:391-9 pubmed
    ..It is proposed that strain TPO should be classified as new subspecies of D. thermobenzoicum as D. thermobenzoicum subsp. thermosyntrophicum. ..
  25. Choi J, Im W, Yoo J, Lee S, Moon D, Kim H, et al. Paenibacillus donghaensis sp. nov., a xylan-degrading and nitrogen-fixing bacterium isolated from East Sea sediment. J Microbiol Biotechnol. 2008;18:189-93 pubmed
    ..Based on the phylogenetic, phenotypic, and chemotaxonomic characteristics, strain JH8T would appear to belong to a novel species, for which the name Paenibacillus donghaensis sp. nov. is proposed (type strain =KCTC 13049T=LMG 23780T). ..
  26. Del Pozo J, Crumlish M, Ferguson H, Green D, Turnbull J. A prospective longitudinal study of "Candidatus arthromitus"-associated rainbow trout gastroenteritis in the UK. Prev Vet Med. 2010;94:289-300 pubmed publisher
    ..In feed NaCl treatments apparently presented a palliative effect if given to affected fish during the clinical outbreaks, but they did not prevent recurrence. ..
  27. Cepeljnik T, Rincon M, Flint H, Marinsek Logar R. Xyn11A, a multidomain multicatalytic enzyme from Pseudobutyrivibrio xylanivorans Mz5T. Folia Microbiol (Praha). 2006;51:263-7 pubmed
  28. Lee F, Kuo H, Tai C, Yokota A, Lo C. Paenibacillus taiwanensis sp. nov., isolated from soil in Taiwan. Int J Syst Evol Microbiol. 2007;57:1351-4 pubmed
    ..apiarius and thus represents a novel species of the genus Paenibacillus, for which the name Paenibacillus taiwanensis sp. nov. is proposed. The type strain is G-soil-2-3(T) (=BCRC 17411(T)=IAM 15414(T)=LMG 23799(T)=DSM 18679(T)). ..
  29. Yuan T, Yang P, Wang Y, Meng K, Luo H, Zhang W, et al. Heterologous expression of a gene encoding a thermostable beta-galactosidase from Alicyclobacillus acidocaldarius. Biotechnol Lett. 2008;30:343-8 pubmed
    ..The enzyme retained 90% of its activity when heated at 70 degrees C for 30 min. Approximately 48% of lactose in milk was hydrolyzed following treatment with the recombinant enzyme over 60 min at 65 degrees C. ..
  30. Lee F, Tien C, Tai C, Wang L, Liu Y, Chern L. Paenibacillus taichungensis sp. nov., from soil in Taiwan. Int J Syst Evol Microbiol. 2008;58:2640-5 pubmed publisher
    ..nov. is proposed. The type strain is V10537(T) (=BCRC 17757(T) =DSM 19942(T)). ..
  31. Vaishampayan P, Miyashita M, Ohnishi A, Satomi M, Rooney A, La Duc M, et al. Description of Rummeliibacillus stabekisii gen. nov., sp. nov. and reclassification of Bacillus pycnus Nakamura et al. 2002 as Rummeliibacillus pycnus comb. nov. Int J Syst Evol Microbiol. 2009;59:1094-9 pubmed publisher
    ..nov. (type strain JCM 11075(T) =NRRL NRS-1691(T)) based on phylogenetic affiliations and phenotypic characterization. ..
  32. Breitenstein A, Saano A, Salkinoja Salonen M, Andreesen J, Lechner U. Analysis of a 2,4,6-trichlorophenol-dehalogenating enrichment culture and isolation of the dehalogenating member Desulfitobacterium frappieri strain TCP-A. Arch Microbiol. 2001;175:133-42 pubmed
  33. Stilinović B, Hrenovic J. Percentage of gelatinolytic bacteria among heterotrophic bacteria as indicator of water quality. Folia Microbiol (Praha). 2004;49:53-8 pubmed
    ..Isolated strains of aerobically grown gelatinolytic bacteria were Gram-negative rod-shaped or Gram-positive endospore-forming rod-shaped cells. ..
  34. Chen S, Song L, Dong X. Sporacetigenium mesophilum gen. nov., sp. nov., isolated from an anaerobic digester treating municipal solid waste and sewage. Int J Syst Evol Microbiol. 2006;56:721-5 pubmed
    ..On the basis of polyphasic evidence from this study, a novel genus and species are proposed, Sporacetigenium mesophilum gen. nov., sp. nov.; strain ZLJ115T (=DSM 16796T = AS 1.5019T) is the type strain of Sporacetigenium mesophilum. ..
  35. Karlsson C, Eliasson M, Olin A, Morgelin M, Karlsson A, Malmsten M, et al. SufA of the opportunistic pathogen finegoldia magna modulates actions of the antibacterial chemokine MIG/CXCL9, promoting bacterial survival during epithelial inflammation. J Biol Chem. 2009;284:29499-508 pubmed publisher
    ..magna, decreasing antibacterial activity and suppressing angiogenesis, thus providing advantage in survival for this anaerobic opportunist compared with competing pathogens during inflammation. ..
  36. Sato T, Hoshino T. Catalytic function of the residues of phenylalanine and tyrosine conserved in squalene-hopene cyclases. Biosci Biotechnol Biochem. 2001;65:2233-42 pubmed
    ..4) F129 was first identified to play a crucial role in catalysis. (5) The three residues, Y372, Y474 and Y540, are responsible for reinforcing the protein structure against thermal denaturation, Y474 being located inside QW motif 3...
  37. Goto K, Matsubara H, Mochida K, Matsumura T, Hara Y, Niwa M, et al. Alicyclobacillus herbarius sp. nov., a novel bacterium containing omega-cycloheptane fatty acids, isolated from herbal tea. Int J Syst Evol Microbiol. 2002;52:109-13 pubmed
    ..On the basis of these results, the name Alicyclobacillus herbarius is proposed for this organism. The type strain is strain CP-1T (= DSM 13609T = IAM 14883T = NRIC 0477T)...
  38. Berge O, Guinebretiere M, Achouak W, Normand P, Heulin T. Paenibacillus graminis sp. nov. and Paenibacillus odorifer sp. nov., isolated from plant roots, soil and food. Int J Syst Evol Microbiol. 2002;52:607-16 pubmed
    ..nov. (type strain RSA19T = ATCC BAA-95T = LMG 19080T) and Paenibacillus odorifer sp. nov. (type strain TOD45T = ATCC BAA-93T = LMG 19079T) are proposed...
  39. Goto K, Nishibori A, Wasada Y, Furuhata K, Fukuyama M, Hara M. Identification of thermo-acidophilic bacteria isolated from the soil of several Japanese fruit orchards. Lett Appl Microbiol. 2008;46:289-94 pubmed publisher
    ..To investigate the occurrence and distribution of thermo-acidophilic bacteria (TAB) associated with various commercial fruit crop soils in Japan and to assess their ability to produce the odorous phenolic compound, guaiacol...
  40. Sakamoto M, Siqueira J, Rôças I, Benno Y. Molecular analysis of the root canal microbiota associated with endodontic treatment failures. Oral Microbiol Immunol. 2008;23:275-81 pubmed publisher
    ..Nevertheless, the breadth of bacterial diversity involved with endodontic treatment failures remains to be consistently explored by culture-independent approaches...
  41. Salinas M, Fardeau M, Thomas P, Cayol J, Patel B, Ollivier B. Mahella australiensis gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from an Australian oil well. Int J Syst Evol Microbiol. 2004;54:2169-73 pubmed
    ..nov., sp. nov...
  42. Shipkowski S, Brenchley J. Characterization of an unusual cold-active beta-glucosidase belonging to family 3 of the glycoside hydrolases from the psychrophilic isolate Paenibacillus sp. strain C7. Appl Environ Microbiol. 2005;71:4225-32 pubmed
    ..The hydrolysis of a variety of aryl-beta-glucosides suggests that the enzyme may allow the organism to use these substrates in the environment and that its low Km on indoxyl-beta-D-glucoside may make it useful for producing indigo...
  43. Parish M, Goodrich R. Recovery of presumptive Alicyclobacillus strains from orange fruit surfacest. J Food Prot. 2005;68:2196-200 pubmed
    ..Significantly (P < or = 0.05) more detection was observed with a mineral-containing medium (Ali agar) than with nonmineral containing media (K agar and acidified potato dextrose agar)...
  44. Hatayama K, Shoun H, Ueda Y, Nakamura A. Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporo. Int J Syst Evol Microbiol. 2006;56:2545-51 pubmed
    ..Based on these results, it is proposed that B. naganoensis and B. laevolacticus should be transferred to Pullulanibacillus naganoensis gen. nov., comb. nov. and Sporolactobacillus laevolacticus comb. nov., respectively...
  45. Foglia F, Mandrich L, Pezzullo M, Graziano G, Barone G, Rossi M, et al. Role of the N-terminal region for the conformational stability of esterase 2 from Alicyclobacillus acidocaldarius. Biophys Chem. 2007;127:113-22 pubmed
    ..The results indicate that EST2 possesses two structural domains whose coupling is tight in the wild-type protein, but markedly weakens in the two mutant forms as a consequence of the perturbations in the N-terminal region...
  46. Kataeva I, Yang S, Dam P, Poole F, Yin Y, Zhou F, et al. Genome sequence of the anaerobic, thermophilic, and cellulolytic bacterium "Anaerocellum thermophilum" DSM 6725. J Bacteriol. 2009;191:3760-1 pubmed publisher
  47. Dasman -, Kajiyama S, Kawasaki H, Yagi M, Seki T, Fukusaki E, et al. Paenibacillus glycanilyticus sp. nov., a novel species that degrades heteropolysaccharide produced by the cyanobacterium Nostoc commune. Int J Syst Evol Microbiol. 2002;52:1669-74 pubmed
    ..5 mol %. Based on these results, it is concluded that this isolate should be placed within a novel species of Paenibacillus, Paenibacillus glycanilyticus sp. nov., with the type strain DS-1T (= IFO 16618T = JCM 11221T = NRRL B-23455T)...
  48. Connor C, Luo H, Gardener B, Wang H. Development of a real-time PCR-based system targeting the 16S rRNA gene sequence for rapid detection of Alicyclobacillus spp. in juice products. Int J Food Microbiol. 2005;99:229-35 pubmed
    ..Using this system, the presence of less than 100 Alicyclobacillus cells could be detected without cross-reactivity with other common food-borne bacteria...
  49. Lim J, Jeon C, Park D, Xu L, Jiang C, Kim C. Paenibacillus xinjiangensis sp. nov., isolated from Xinjiang province in China. Int J Syst Evol Microbiol. 2006;56:2579-82 pubmed
    ..nov. is proposed...
  50. Malinen A, Belogurov G, Baykov A, Lahti R. Na+-pyrophosphatase: a novel primary sodium pump. Biochemistry. 2007;46:8872-8 pubmed publisher
    ..These findings define Na+-dependent PPases as electrogenic Na+ pumps. Phylogenetic analysis suggests that ancient gene duplication preceded the split of Na+- and H+-PPases...
  51. Groenewald W, Gouws P, Witthuhn R. Isolation and identification of species of Alicyclobacillus from orchard soil in the Western Cape, South Africa. Extremophiles. 2008;12:159-63 pubmed
    ..The presence of these organisms in the soil suggests a possible source of contamination for the final fruit juice, concentrate or pulp...
  52. Aguilera M, Quesada M, Del Aguila V, Morillo J, Rivadeneyra M, Ramos Cormenzana A, et al. Characterisation of Paenibacillus jamilae strains that produce exopolysaccharide during growth on and detoxification of olive mill wastewaters. Bioresour Technol. 2008;99:5640-4 pubmed
    ..The results presented in this study, indicated the possible perspectives for using these bacterial strains to produce EPS and contribute to the bioremediation of the waste waters that are produced in the olive oil elaboration process...
  53. Noach I, Alber O, Bayer E, Lamed R, Levy Assaraf M, Shimon L, et al. Crystallization and preliminary X-ray analysis of Acetivibrio cellulolyticus cellulosomal type II cohesin module: two versions having different linker lengths. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008;64:58-61 pubmed
    ..76, b = 159.22, c = 44.21 A for CohB2_L. The crystals diffracted to 2.0 and 2.9 A resolution, respectively. The asymmetric unit of CohB2_S contains three cohesin molecules, while that of CohB2_L contains two molecules...
  54. Mouton L, Ebert D. Variable-number-of-tandem-repeats analysis of genetic diversity in Pasteuria ramosa. Curr Microbiol. 2008;56:447-52 pubmed publisher
    ..ramosa are informative in revealing genetic differences within and among populations and may therefore become an important tool for providing detailed analysis of population genetics and epidemiology...
  55. Khianngam S, Tanasupawat S, Lee J, Lee K, Akaracharanya A. Paenibacillus siamensis sp. nov., Paenibacillus septentrionalis sp. nov. and Paenibacillus montaniterrae sp. nov., xylanase-producing bacteria from Thai soils. Int J Syst Evol Microbiol. 2009;59:130-4 pubmed publisher
    ..nov. (type strain X13-1(T) =KCTC 13039(T) =PCU 280(T) =TISTR 1830(T)) and Paenibacillus montaniterrae sp. nov. (type strain MXC2-2(T) =KCTC 13036(T) =PCU 281(T) =TISTR 1836(T)) are proposed...
  56. Konishi J, Ishii Y, Onaka T, Maruhashi K. Purification and characterization of the monooxygenase catalyzing sulfur-atom specific oxidation of dibenzothiophene and benzothiophene from the thermophilic bacterium Paenibacillus sp. strain A11-2. Appl Microbiol Biotechnol. 2002;60:128-33 pubmed
    ..A comparison of the substrate specificity of TdsC and DszC, the homologous monooxygenase purified from Rhodococcus erythropolis strain KA2-5-1, demonstrated a contrasting pattern towards alkylated DBTs and BTs...
  57. Soriano M, Diaz P, Pastor F. Pectinolytic systems of two aerobic sporogenous bacterial strains with high activity on pectin. Curr Microbiol. 2005;50:114-8 pubmed
    ..BP-7 is comprised of pectate lyases and pectin lyases. The results show differences in pectin degrading systems between the two aerobic sporogenous bacterial strains studied...
  58. Zavarzina D, Sokolova T, Tourova T, Chernyh N, Kostrikina N, Bonch Osmolovskaya E. Thermincola ferriacetica sp. nov., a new anaerobic, thermophilic, facultatively chemolithoautotrophic bacterium capable of dissimilatory Fe(III) reduction. Extremophiles. 2007;11:1-7 pubmed
    ..carboxydophila was 27%. On the basis of physiological and phylogenetic data it is proposed that strain Z-0001(T) (=DSMZ 14005, VKM B-2307) should be placed in the genus Thermincola as a new species Thermincola ferriacetica sp. nov...
  59. Lorentz R, Artico S, da Silveira A, Einsfeld A, Corcao G. Evaluation of antimicrobial activity in Paenibacillus spp. strains isolated from natural environment. Lett Appl Microbiol. 2006;43:541-7 pubmed
    ..Paenibacillus isolates were selected to test antimicrobial activity against bacteria, filamentous fungi and yeasts isolates, with the purpose of finding new bacterium species for microbiological control...
  60. Eeckhaut V, Van Immerseel F, Teirlynck E, Pasmans F, Fievez V, Snauwaert C, et al. Butyricicoccus pullicaecorum gen. nov., sp. nov., an anaerobic, butyrate-producing bacterium isolated from the caecal content of a broiler chicken. Int J Syst Evol Microbiol. 2008;58:2799-802 pubmed publisher
    ..nov., sp. nov. The type strain of Butyricicoccus pullicaecorum is 25-3(T) (=LMG 24109(T) =CCUG 55265(T)). The DNA G+C content of strain 25-3(T) was 54.5 mol% ...
  61. Jeon C, Lim J, Lee S, Chung B, Park D, Xu L, et al. Paenibacillus harenae sp. nov., isolated from desert sand in China. Int J Syst Evol Microbiol. 2009;59:13-7 pubmed publisher
    ..nov. is proposed. The type strain is B519T (=KCTC 3951T =DSM 16969T)...
  62. Choi M, Bae J, Kim K, Kang H, Cha C. Brevibacillus fluminis sp. nov., isolated from sediment of estuarine wetland. Int J Syst Evol Microbiol. 2010;60:1595-9 pubmed publisher
    ..nov. is proposed; the type strain is CJ71(T) (=KACC 13381(T)=JCM 15716(T))...
  63. Plugge C, Balk M, Zoetendal E, Stams A. Gelria glutamica gen. nov., sp. nov., a thermophilic, obligately syntrophic, glutamate-degrading anaerobe. Int J Syst Evol Microbiol. 2002;52:401-7 pubmed
    ..The additional base pairs were found as long loops in the V1, V7 and V9 regions of the 16S rDNA. However, the loops were not found in the 16S rRNA. The name Gelria glutamica gen. nov., sp. nov. is proposed for strain TGO(T)...
  64. Bosshard P, Zbinden R, Altwegg M. Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes. Int J Syst Evol Microbiol. 2002;52:2241-9 pubmed
    ..nov., the type strain of which is strain MOL722(T) (= DSM 14349(T) = NCCB 100011(T))...
  65. Goto K, Mochida K, Asahara M, Suzuki M, Kasai H, Yokota A. Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess omega-alicyclic fatty acids, and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol. 2003;53:1537-44 pubmed
    ..The name Alicyclobacillus pomorum is proposed for this organism. The type strain of Alicyclobacillus pomorum is strain 3A(T) (=DSM 14955(T)=IAM 14988(T))...
  66. Morillo J, Aguilera M, Ramos Cormenzana A, Monteoliva Sanchez M. Production of a metal-binding exopolysaccharide by Paenibacillus jamilae using two-phase olive-mill waste as fermentation substrate. Curr Microbiol. 2006;53:189-93 pubmed
    ..Finally, an adsorption experiment of Pb (II), Cd (II), Cu (II), Zn (II), Co (II), and Ni (II) by EPS is reported. Lead was preferentially complexed by the polymer, with a maximal uptake of 230 mg/g EPS...
  67. Murray M, Gurtler J, Ryu J, Harrison M, Beuchat L. Evaluation of direct plating methods to enumerate Alicyclobacillus in beverages. Int J Food Microbiol. 2007;115:59-69 pubmed
  68. Vollú R, da Mota F, Gomes E, Seldin L. Cyclodextrin production and genetic characterization of cyclodextrin glucanotranferase of Paenibacillus graminis. Biotechnol Lett. 2008;30:929-35 pubmed publisher
    ..graminis CGTase protein showed to be closer (79.4% protein identity) to P. macerans |P31835|. Hybridization studies suggested that the gene encoding CGTase is located in different positions in the genomes of P. macerans and P. graminis...
  69. Groenewald W, Gouws P, Witthuhn R. Isolation, identification and typification of Alicyclobacillus acidoterrestris and Alicyclobacillus acidocaldarius strains from orchard soil and the fruit processing environment in South Africa. Food Microbiol. 2009;26:71-6 pubmed publisher
    ..Three isolateT:/PGN/ELSEVIER/YFMIC/web/00001155/s identified as A. acidocaldarius gave three unique banding patterns...
  70. Yoon J, Kang S, Yeo S, Oh T. Paenibacillus alkaliterrae sp. nov., isolated from an alkaline soil in Korea. Int J Syst Evol Microbiol. 2005;55:2339-44 pubmed
    ..On the basis of phenotypic and phylogenetic data, strain KSL-134T (=KCTC 3956T=DSM 17040T) was classified in the genus Paenibacillus as a member of a novel species, for which the name Paenibacillus alkaliterrae sp. nov. is proposed...
  71. Nielsen M, Kjeldsen K, Ingvorsen K. Desulfitibacter alkalitolerans gen. nov., sp. nov., an anaerobic, alkalitolerant, sulfite-reducing bacterium isolated from a district heating plant. Int J Syst Evol Microbiol. 2006;56:2831-6 pubmed
    ..kt5(T) represents a novel species within a novel genus, for which the name Desulfitibacter alkalitolerans gen. nov., sp. nov. is proposed. The type strain of Desulfitibacter alkalitolerans is sk.kt5(T) (=JCM 12761(T)=DSM 16504(T))...
  72. Lee S, Chang S, Shin J, Kang D. Membrane filtration method for enumeration and isolation of Alicyclobacillus spp. from apple juice. Lett Appl Microbiol. 2007;45:540-6 pubmed
    ..To evaluate the applicability of filtration membranes for detecting Alicyclobacillus spp. spores in apple juice...
  73. Costas L, Bosio V, Pandey A, Castro G. Effects of organic solvents on immobilized lipase in pectin microspheres. Appl Biochem Biotechnol. 2008;151:578-86 pubmed publisher
    ..Encapsulation of lipase in pectin gels cross-linked with calcium ions brings three to four times more enzymatic activity in 70% water miscible organic solvents compared to aqueous systems...
  74. Pikuta E, Lysenko A, Chuvilskaya N, Mendrock U, Hippe H, Suzina N, et al. Anoxybacillus pushchinensis gen. nov., sp. nov., a novel anaerobic, alkaliphilic, moderately thermophilic bacterium from manure, and description of Anoxybacillus flavitherms comb. nov. Int J Syst Evol Microbiol. 2000;50 Pt 6:2109-17 pubmed
    ..nov. 'Bacillus flavothermus' strain d.y., which was found to be closely related to strain K1T, is described as Anoxybacillus flavithermus comb. nov. (type strain = d.y.T = DSM 2641T)...
  75. Morikawa M. Beneficial biofilm formation by industrial bacteria Bacillus subtilis and related species. J Biosci Bioeng. 2006;101:1-8 pubmed
    ..Although it is obviously important to control harmful biofilm formation, the exploitation of beneficial biofilms formed by such industrial bacteria may lead to a new biotechnology...
  76. Caldwell P, MacLean M, Norris P. Ribulose bisphosphate carboxylase activity and a Calvin cycle gene cluster in Sulfobacillus species. Microbiology. 2007;153:2231-40 pubmed
    ..Eight genes potentially involved in the CBB cycle in S. acidophilus were clustered in the order cbbA, cbbP, cbbE, cbbL, cbbS, cbbX, cbbG and cbbT...
  77. Kim B, Jeong W, Kim D, Oh H, Kim H, Park D, et al. Paenibacillus pueri sp. nov., isolated from Pu'er tea. Int J Syst Evol Microbiol. 2009;59:1002-6 pubmed publisher
    ..nov. is proposed. The type species is b09i-3(T) (=KCTC 13223(T)=CECT 7360(T))...
  78. Kim M, Sathiyaraj S, Pulla R, Yang D. Brevibacillus panacihumi sp. nov., a beta-glucosidase-producing bacterium. Int J Syst Evol Microbiol. 2009;59:1227-31 pubmed publisher
    ..Based on these data, the two strains are considered to represent a novel species of the genus Brevibacillus, for which the name Brevibacillus panacihumi sp. nov. is proposed. The type strain is DCY35(T) (=KCTC 13206(T) =JCM 15085(T))...
  79. Be er A, Smith R, Zhang H, Florin E, Payne S, Swinney H. Paenibacillus dendritiformis bacterial colony growth depends on surfactant but not on bacterial motion. J Bacteriol. 2009;191:5758-64 pubmed publisher
    ..Instead, the growth of the colony is strongly affected by the availability of a surfactant that reduces surface tension...
  80. Pikuta E, Hoover R, Bej A, Marsic D, Detkova E, Whitman W, et al. Tindallia californiensis sp. nov., a new anaerobic, haloalkaliphilic, spore-forming acetogen isolated from Mono Lake in California. Extremophiles. 2003;7:327-34 pubmed
    ..On the basis of these physiological and molecular properties, strain APO is proposed to be a novel species of the genus Tindallia with the name Tindallia californiensis sp. nov., (type strain APO = ATCC BAA-393 = DSM 14871)...
  81. Harada K, Tanaka K, Fukuda Y, Hashimoto W, Murata K. Degradation of rice bran hemicellulose by Paenibacillus sp. strain HC1: gene cloning, characterization and function of beta-D-glucosidase as an enzyme involved in degradation. Arch Microbiol. 2005;184:215-24 pubmed
    ..0 and 37 degrees C. Strain HC1 glycosidases responsible for degradation of rice bran hemicellulose are expected to be useful for structurally determining and molecularly modifying rice bran hemicellulose and its derivatives...
  82. Ma Y, Xia Z, Liu X, Chen S. Paenibacillus sabinae sp. nov., a nitrogen-fixing species isolated from the rhizosphere soils of shrubs. Int J Syst Evol Microbiol. 2007;57:6-11 pubmed
    ..On the basis of these data, the five novel strains represent a novel species of the genus Paenibacillus, for which the name Paenibacillus sabinae sp. nov. is proposed. The type strain is T27(T) (=CCBAU 10202(T)=DSM 17841(T))...
  83. Ryzhkov P, Ostermann K, Rödel G. Isolation, gene structure, and comparative analysis of the S-layer gene sslA of Sporosarcina ureae ATCC 13881. Genetica. 2007;131:255-65 pubmed
    ..The distance between the -35/-10 region and the ATG initiation codon is unusually long, and a 41 bp palindromic sequence is present in the immediate vicinity of the -35/-10 region...
  84. Bevilacqua A, Sinigaglia M, Corbo M. Alicyclobacillus acidoterrestris: new methods for inhibiting spore germination. Int J Food Microbiol. 2008;125:103-10 pubmed publisher
    ..The 2nd topic is a description of some innovative methods to reduce the initial spore number (high hydrostatic and homogenisation pressures, radiation and microwaves)...
  85. Park D, Jeong W, Lee K, Oh H, Kim B, Bae K, et al. Paenibacillus pectinilyticus sp. nov., isolated from the gut of Diestrammena apicalis. Int J Syst Evol Microbiol. 2009;59:1342-7 pubmed publisher
    ..Therefore strain RCB-08(T) is considered to represent a novel species of the genus Paenibacillus, for which the name Paenibacillus pectinilyticus sp. nov. is proposed. The type strain is RCB-08(T) (=KCTC 13222(T)=CECT 7358(T))...
  86. da Silva K, Salles J, Seldin L, van Elsas J. Application of a novel Paenibacillus-specific PCR-DGGE method and sequence analysis to assess the diversity of Paenibacillus spp. in the maize rhizosphere. J Microbiol Methods. 2003;54:213-31 pubmed
    ..These results clearly demonstrated the efficacy of the Paenibacillus-specific PCR-DGGE method in describing Paenibacillus species diversity in rhizosphere soils...
  87. Rivas R, Mateos P, Martínez Molina E, Velázquez E. Paenibacillus xylanilyticus sp. nov., an airborne xylanolytic bacterium. Int J Syst Evol Microbiol. 2005;55:405-8 pubmed
    ..pabuli DSM 3036T were 43.3 and 36.3 %, respectively. According to the data obtained, strain XIL14T is considered to represent a novel species for which the name Paenibacillus xylanilyticus sp. nov. is proposed (=LMG 21957T=CECT 5839T)...
  88. Rivas R, Gutierrez C, Abril A, Mateos P, Martínez Molina E, Ventosa A, et al. Paenibacillus rhizosphaerae sp. nov., isolated from the rhizosphere of Cicer arietinum. Int J Syst Evol Microbiol. 2005;55:1305-9 pubmed
    ..nov. is proposed. The type strain is CECAP06(T) (=LMG 21955(T) = CECT 5831(T))...
  89. Chen S, Hu X, Shi W, Dong J, Wang J. [Isolation and identification Alicyclobacillus from concentrated apple juice processing]. Wei Sheng Wu Xue Bao. 2004;44:816-9 pubmed
    ..The results of phenotypic characteristics test had good agreement with 16S rDNA PCR-RFLP analyses, that the 7 strains were different from all the 5 reference strains, they are new species of Alicyclobacillus...
  90. Anand T, Bhat A, Shouche Y, Roy U, Siddharth J, Sarma S. Antimicrobial activity of marine bacteria associated with sponges from the waters off the coast of South East India. Microbiol Res. 2006;161:252-62 pubmed
    ..To our knowledge this is the first report on phylogenetic identification of antibiotic producing bacteria associated with sponges from Indian waters...
  91. Ma Y, Chen S. Paenibacillus forsythiae sp. nov., a nitrogen-fixing species isolated from rhizosphere soil of Forsythia mira. Int J Syst Evol Microbiol. 2008;58:319-23 pubmed publisher
    ..nov. is proposed. The type strain is T98(T) (=CCBAU 10203(T) =DSM 17842(T))...
  92. Kwon S, Kim B, Song J, Weon H, Schumann P, Tindall B, et al. Sporosarcina koreensis sp. nov. and Sporosarcina soli sp. nov., isolated from soil in Korea. Int J Syst Evol Microbiol. 2007;57:1694-8 pubmed
    ..nov. (type strain F73(T) =KACC 11299(T) =DSM 16921(T)) and Sporosarcina soli sp. nov. (type strain I80(T) =KACC 11300(T) =DSM 16920(T)) are proposed...