flavobacteriaceae

Summary

Summary: A family of bacteria in the order Sphingobacteriales, class Sphingobacteria. They are gram-negative rods, mostly saprophytic in terrestrial and aquatic habitats.

Top Publications

  1. Pinhassi J, Bowman J, Nedashkovskaya O, Lekunberri I, Gomez Consarnau L, Pedrós Alió C. Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae. Int J Syst Evol Microbiol. 2006;56:1489-93 pubmed
    Bacteria in the family Flavobacteriaceae are increasingly recognized to play important roles in the degradation of organic matter during and following algal blooms...
  2. Kim K, Kim M, Lim J, Park H, Lee S. Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int J Syst Evol Microbiol. 2005;55:1287-93 pubmed
    ..lineage from the type strains of the Chryseobacterium-Bergeyella-Riemerella branch within the family Flavobacteriaceae (90.7-93.9 % similarities), which was supported by phenotypic differences...
  3. Nedashkovskaya O, Kim S, Lysenko A, Kalinovskaya N, Mikhailov V, Kim I, et al. Polaribacter butkevichii sp. nov., a novel marine mesophilic bacterium of the family Flavobacteriaceae. Curr Microbiol. 2005;51:408-12 pubmed
    ..16S rRNA gene sequence analysis revealed that strain KMM 3,938(T) is a member of the family Flavobacteriaceae. The predominant fatty acids were C13:0 iso, C14:0 iso, C15:0 iso, C15:0, C15:1Delta6, 3OH-C15:0:3 iso, and ..
  4. Shindo K, Kikuta K, Suzuki A, Katsuta A, Kasai H, Yasumoto Hirose M, et al. Rare carotenoids, (3R)-saproxanthin and (3R,2'S)-myxol, isolated from novel marine bacteria (Flavobacteriaceae) and their antioxidative activities. Appl Microbiol Biotechnol. 2007;74:1350-7 pubmed
    ..These strains were classified as novel species of the family Flavobacteriaceae based on their 16S rRNA gene sequence...
  5. Khan S, Nakagawa Y, Harayama S. Sediminibacter furfurosus gen. nov., sp. nov. and Gilvibacter sediminis gen. nov., sp. nov., novel members of the family Flavobacteriaceae. Int J Syst Evol Microbiol. 2007;57:265-9 pubmed
    ..studies based on 16S rRNA gene sequences indicated that Mok-1-36T and MAOS-86T were members of the family Flavobacteriaceae, clustering with members of the genera Ulvibacter and Vitellibacter, respectively...
  6. Sun F, Wang B, Du Y, Liu X, Lai Q, Li G, et al. Arenibacter nanhaiticus sp. nov., isolated from marine sediment of the South China Sea. Int J Syst Evol Microbiol. 2010;60:78-83 pubmed publisher
    ..The name Arenibacter nanhaiticus sp. nov. is proposed and the type strain is NH36A(T) (=LMG 24842(T)=CCTCC AB 208315(T)=MCCC 1A04137(T))...
  7. Lami R, Cottrell M, Campbell B, Kirchman D. Light-dependent growth and proteorhodopsin expression by Flavobacteria and SAR11 in experiments with Delaware coastal waters. Environ Microbiol. 2009;11:3201-9 pubmed publisher
    ..Collectively, these data suggest that light affects growth of PR-containing bacteria and regulation of PR mRNA synthesis in natural communities...
  8. Qin Q, Zhang X, Wang X, Liu G, Chen X, Xie B, et al. The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation. BMC Genomics. 2010;11:247 pubmed publisher
    ..SM-A87, which was isolated from deep-sea sediment, is an aerobic, gram-negative bacterium that represents a new genus of Flavobacteriaceae. This is the first sequenced genome of a deep-sea bacterium from the phylum Bacteroidetes.
  9. Klippel B, Lochner A, Bruce D, Davenport K, Detter C, Goodwin L, et al. Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae. J Bacteriol. 2011;193:4545-6 pubmed publisher
    Two members of the family Flavobacteriaceae were isolated from subseafloor sediments using artificial seawater with cellulose, xylan, and chitin as the sole carbon and energy sources...

More Information

Publications114 found, 100 shown here

  1. Gonzalez J, Pinhassi J, Fernández Gómez B, Coll Lladó M, González Velázquez M, Puigbò P, et al. Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134. Appl Environ Microbiol. 2011;77:8676-86 pubmed publisher
    ..The genomic features reported here may well be among the keys to a successful photoheterotrophic lifestyle...
  2. Williams T, Wilkins D, Long E, Evans F, Demaere M, Raftery M, et al. The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics. Environ Microbiol. 2013;15:1302-17 pubmed publisher
    ..Overall, the study provides functional data for the microbial mechanisms of nutrient cycling at the surface of the coastal Southern Ocean...
  3. O Sullivan L, Rinna J, Humphreys G, Weightman A, Fry J. Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov. Int J Syst Evol Microbiol. 2006;56:169-80 pubmed
    ..of the 'Bacteroidetes' and examined by phylogenetic analysis of 16S rRNA gene sequences belonged to the Flavobacteriaceae. Furthermore, most (62 %) of these were almost certainly members of the genus Flavobacterium and all but one ..
  4. Kwon K, Lee H, Jung H, Kang J, Kim S. Yeosuana aromativorans gen. nov., sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae, isolated from estuarine sediment of the South Sea, Korea. Int J Syst Evol Microbiol. 2006;56:727-32 pubmed
    ..taxonomic evidence, strain GW1-1T is classified as a member of a novel genus and species in the family Flavobacteriaceae, for which the name Yeosuana aromativorans gen. nov., sp. nov. is proposed...
  5. Allen T, Lawson P, Collins M, Falsen E, Tanner R. Cloacibacterium normanense gen. nov., sp. nov., a novel bacterium in the family Flavobacteriaceae isolated from municipal wastewater. Int J Syst Evol Microbiol. 2006;56:1311-6 pubmed
    ..indicated that these strains were members of the Bergeyella-Chryseobacterium-Riemerella branch of the family Flavobacteriaceae. The unknown bacterium was readily distinguished from reference strains by 16S rRNA gene sequencing and ..
  6. Bauer M, Kube M, Teeling H, Richter M, Lombardot T, Allers E, et al. Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ Microbiol. 2006;8:2201-13 pubmed
  7. Kampfer P, Matthews H, Glaeser S, Martin K, Lodders N, Faye I. Elizabethkingia anophelis sp. nov., isolated from the midgut of the mosquito Anopheles gambiae. Int J Syst Evol Microbiol. 2011;61:2670-5 pubmed publisher
    ..nov. is proposed. The type strain is R26(T) ( = CCUG 60038(T) = CCM 7804(T))...
  8. Tomshich S, Isakov V, Komandrova N, Shevchenko L. Structure of the O-specific polysaccharide of the marine bacterium Arenibacter palladensis KMM 3961(T) containing 2-acetamido-2-deoxy-l-galacturonic acid. Biochemistry (Mosc). 2012;77:87-91 pubmed publisher
  9. Lau S, Tsoi M, Li X, Plakhotnikova I, Dobretsov S, Lau K, et al. Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. Int J Syst Evol Microbiol. 2005;55:1589-92 pubmed
    ..of the 16S rRNA gene sequence placed UST030701-295(T) within the genus Winogradskyella of the family Flavobacteriaceae, sharing 94.7-95.8% similarity with the three recognized members of the genus...
  10. Lee O, Lau S, Tsoi M, Li X, Plakhotnikova I, Dobretsov S, et al. Gillisia myxillae sp. nov., a novel member of the family Flavobacteriaceae, isolated from the marine sponge Myxilla incrustans. Int J Syst Evol Microbiol. 2006;56:1795-9 pubmed
    ..The name Gillisia myxillae sp. nov. is proposed, with UST050418-085(T) (=JCM 13564(T)=NRRL B-41416(T)) [corrected] as the type strain...
  11. Qin Q, Zhao D, Wang J, Chen X, Dang H, Li T, et al. Wangia profunda gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment. FEMS Microbiol Lett. 2007;271:53-8 pubmed
    ..based on 16S rRNA gene sequences revealed that strain SM-A87(T) formed a distinct lineage within the family Flavobacteriaceae, with <93% sequence similarity to the nearest strain of genus Salegentibacter...
  12. Gonzalez J, Fernández Gómez B, Fernández Guerra A, Gomez Consarnau L, Sanchez O, Coll Lladó M, et al. Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria). Proc Natl Acad Sci U S A. 2008;105:8724-9 pubmed publisher
    ..The genome will serve as a model to study the cellular and molecular processes in bacteria that express proteorhodopsin, their adaptation to the oceanic environment, and their role in carbon-cycling...
  13. Jacobs A, Chenia H. Biofilm-forming capacity, surface hydrophobicity and aggregation characteristics of Myroides odoratus isolated from South African Oreochromis mossambicus fish. J Appl Microbiol. 2009;107:1957-66 pubmed publisher
    ..The ability of these nonmotile isolates to adhere to surfaces and the role of hydrophobicity and autoaggregation were investigated...
  14. Koh E, Atamna Ismaeel N, Martin A, Cowie R, Beja O, Davy S, et al. Proteorhodopsin-bearing bacteria in Antarctic sea ice. Appl Environ Microbiol. 2010;76:5918-25 pubmed publisher
    ..Questions still remain regarding the protein's ecological functions, and ultimately, field experiments will be needed to establish the ecological and functional role of PRs in the sea ice ecosystem...
  15. Yu Y, Li H, Zeng Y, Sun K, Chen B. Pricia antarctica gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from Antarctic intertidal sediment. Int J Syst Evol Microbiol. 2012;62:2218-23 pubmed publisher
    ..line and the results indicated that the novel strain should be placed in a new genus within the family Flavobacteriaceae. In pairwise comparisons between strain ZS1-8(T) and recognized species, the levels of 16S rRNA gene ..
  16. Nedashkovskaya O, Kim S, Lee K, Mikhailov V, Bae K. Gillisia mitskevichiae sp. nov., a novel bacterium of the family Flavobacteriaceae, isolated from sea water. Int J Syst Evol Microbiol. 2005;55:321-3 pubmed
    ..nov. is proposed. The type strain is KMM 6034T (=KCTC 12261T=NBRC 100590T=LMG 22575T)...
  17. Nedashkovskaya O, Kim S, Vancanneyt M, Snauwaert C, Lysenko A, Rohde M, et al. Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa. Int J Syst Evol Microbiol. 2006;56:161-7 pubmed
    ..analysis revealed an affiliation between the strains studied and the genus Formosa, a member of the family Flavobacteriaceae. The level of sequence similarity between strain KMM 3901T and Formosa algae KMM 3553T was 99.1 %...
  18. Ahmed I, Yokota A, Fujiwara T. Chimaereicella boritolerans sp. nov., a boron-tolerant and alkaliphilic bacterium of the family Flavobacteriaceae isolated from soil. Int J Syst Evol Microbiol. 2007;57:986-92 pubmed
    ..nov. for this novel species. The type strain is strain T-22(T) (=DSM 17298(T)=NBRC 101277(T)=ATCC BAA-1189(T))...
  19. Nedashkovskaya O, Vancanneyt M, Kim S, Zhukova N. Winogradskyella echinorum sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol. 2009;59:1465-8 pubmed publisher
    ..analysis based on 16S rRNA gene sequences revealed that strain KMM 6211(T) is a member of the family Flavobacteriaceae, phylum Bacteroidetes...
  20. Barbeyron T, Lerat Y, Sassi J, Le Panse S, Helbert W, Collén P. Persicivirga ulvanivorans sp. nov., a marine member of the family Flavobacteriaceae that degrades ulvan from green algae. Int J Syst Evol Microbiol. 2011;61:1899-905 pubmed publisher
    ..Phylogenetic analysis based on the sequence of the 16S rRNA gene placed the novel strain in the family Flavobacteriaceae (phylum 'Bacteroidetes'), within a clade comprising Stenothermobacter spongiae, Nonlabens tegetincola, ..
  21. Nam Y, Lee H, Lee M, Yim K, Kim K, Roh S, et al. Draft genome sequence of Gillisia sp. strain CBA3202, a novel member of the genus Gillisia, which belongs to the family Flavobacteriaceae. J Bacteriol. 2012;194:3739 pubmed publisher
    Gillisia sp. strain CBA3202, which belongs to the family Flavobacteriaceae, was isolated from sand of the seashore on Jeju Island, Republic of Korea. The draft genome of Gillisia sp. CBA3202 contains 2,981,404 bp with a G+C content of 34...
  22. Feng S, Powell S, Wilson R, Bowman J. Light-stimulated growth of proteorhodopsin-bearing sea-ice psychrophile Psychroflexus torquis is salinity dependent. ISME J. 2013;7:2206-13 pubmed publisher
    ..Our findings extend the existing paradigm that light provides an energy source for marine prokaryotes under stress conditions other than nutrient limitation. ..
  23. Bowman J, Nichols D. Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola . Int J Syst Evol Microbiol. 2005;55:1471-86 pubmed
    ..Isolates investigated in this study belonged to the marine clade of the family Flavobacteriaceae and represented lineages that were either distinct from species with validly published names or appeared to ..
  24. Nichols C, Bowman J, Guezennec J. Olleya marilimosa gen. nov., sp. nov., an exopolysaccharide-producing marine bacterium from the family Flavobacteriaceae, isolated from the Southern Ocean. Int J Syst Evol Microbiol. 2005;55:1557-61 pubmed
    ..16S rRNA gene sequence analysis showed that this isolate was a member of the family Flavobacteriaceae, but represented a separate lineage...
  25. Barbeyron T, L Haridon S, Michel G, Czjzek M. Mariniflexile fucanivorans sp. nov., a marine member of the Flavobacteriaceae that degrades sulphated fucans from brown algae. Int J Syst Evol Microbiol. 2008;58:2107-13 pubmed publisher
    ..based on the sequence of the 16S rRNA gene allocated strain SW5(T) to the genus Mariniflexile in the family Flavobacteriaceae, with a similarity of 98...
  26. Chen X, Xie B, Bian F, Zhao G, Zhao H, He H, et al. Ecological function of myroilysin, a novel bacterial M12 metalloprotease with elastinolytic activity and a synergistic role in collagen hydrolysis, in biodegradation of deep-sea high-molecular-weight organic nitrogen. Appl Environ Microbiol. 2009;75:1838-44 pubmed publisher
    ..It can be speculated that myroilysin synergistically interacts with other enzymes in its in situ biotic assemblage and that it may play an important role in the degradation of deep-sea HMW organic nitrogen...
  27. Nedashkovskaya O, Suzuki M, Lee J, Lee K, Shevchenko L, Mikhailov V. Pseudozobellia thermophila gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae, isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol. 2009;59:806-10 pubmed publisher
    ..of the 16S rRNA gene sequences showed that the strains represented a novel lineage within the family Flavobacteriaceae. The most closely related genera with validly published names were Costertonia, Flagellimonas, Kriegella, ..
  28. Oh H, Kang I, Yang S, Jang Y, Vergin K, Giovannoni S, et al. Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae. J Bacteriol. 2011;193:303-4 pubmed publisher
    ..strain HTCC2170. Strain sp. HTCC2170 is predicted to be a facultatively aerobic chemoorganotroph that, based on genomic sequence analysis, is capable of macromolecule degradation and anaerobic respiration...
  29. Park S, Oh K, Lee S, Oh T, Yoon J. Cellulophaga geojensis sp. nov., a member of the family Flavobacteriaceae isolated from marine sand. Int J Syst Evol Microbiol. 2012;62:1354-8 pubmed publisher
    ..nov. is proposed. The type strain is M-M6(T) ( = KCTC 23498(T) = CCUG 60801(T))...
  30. Nedashkovskaya O, Suzuki M, Vysotskii M, Mikhailov V. Arenibacter troitsensis sp. nov., isolated from marine bottom sediment. Int J Syst Evol Microbiol. 2003;53:1287-90 pubmed
    ..16S rDNA sequence analysis revealed that this bacterium was a member of the family FLAVOBACTERIACEAE: On the basis of phenotypic, chemotaxonomic, genotypic and phylogenetic analyses, the bacterium was shown to ..
  31. Nedashkovskaya O, Kim S, Han S, Rhee M, Lysenko A, Falsen E, et al. Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol. 2004;54:119-23 pubmed
    ..16S rDNA sequence analysis indicated that strain KMM 3912T formed a distinct lineage within the family Flavobacteriaceae. On the basis of phenotypic, chemotaxonomic, genotypic and phylogenetic analyses, the novel bacteria were ..
  32. Van Trappen S, Vandecandelaere I, Mergaert J, Swings J. Gillisia limnaea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a microbial mat in Lake Fryxell, Antarctica. Int J Syst Evol Microbiol. 2004;54:445-8 pubmed
    ..Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains belong to the family Flavobacteriaceae, in which they form a distinct lineage...
  33. Ivanova E, Alexeeva Y, Flavier S, Wright J, Zhukova N, Gorshkova N, et al. Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae. Int J Syst Evol Microbiol. 2004;54:705-11 pubmed
    ..KMM 3553(T) formed a distinct phyletic line in the phylum Bacteroidetes, class Flavobacteria in the family Flavobacteriaceae and that, phylogenetically, this strain could be placed almost equidistant from the genera Gelidibacter and ..
  34. Nedashkovskaya O, Kim S, Han S, Lysenko A, Mikhailov V, Bae K. Arenibacter certesii sp. nov., a novel marine bacterium isolated from the green alga Ulva fenestrata. Int J Syst Evol Microbiol. 2004;54:1173-6 pubmed
    ..nov. is proposed. The type strain is KMM 3941T (=KCTC 12113T=CCUG 48006T)...
  35. Cho J, Giovannoni S. Robiginitalea biformata gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae with a higher G+C content. Int J Syst Evol Microbiol. 2004;54:1101-6 pubmed
    ..algorithms revealed that the strains formed a coherent and novel genus-level lineage within the family Flavobacteriaceae. The dominant fatty acids were branched or hydroxy acids, i15 : 0, i15 : 1 and 3-OH i17 : 0 being the most ..
  36. Jung Y, Kim J, Oh T, Yoon J. Mariniflexile aquimaris sp. nov., isolated from seawater, and emended description of the genus Mariniflexile Nedashkovskaya et al. 2006. Int J Syst Evol Microbiol. 2012;62:539-44 pubmed publisher
    ..rRNA gene sequences showed that strain HWR-17(T) clustered with the two Mariniflexile species in the family Flavobacteriaceae, exhibiting 16S rRNA gene sequence similarity of 97.1-97.2% to their type strains and less than 95...
  37. Tomova A, Tomova I, Vasileva Tonkova E, Lazarkevich I, Stoilova Disheva M, Lyutskanova D, et al. Myroides guanonis sp. nov., isolated from prehistoric paintings. Int J Syst Evol Microbiol. 2013;63:4266-70 pubmed publisher
    ..nov. is proposed. The type strain is IM13(T) (?=?DSM 26542(T)?=?NBIMCC 8736(T)). ..
  38. Hehemann J, Michel G, Barbeyron T, Czjzek M. Expression, purification and preliminary X-ray diffraction analysis of the catalytic module of a beta-agarase from the flavobacterium Zobellia galactanivorans. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010;66:413-7 pubmed publisher
    ..Hexagonal crystals belonging to space group P3(1)21 diffracted to 2.2 A resolution, whereas orthorhombic crystals belonging to space group P2(1)2(1)2(1) diffracted to 1.5 A resolution. ..
  39. Chen Y, Zhang Z, Fu Y, Wang Y, Wang Y, Jiao N. Altuibacter lentus gen. nov., sp. nov., a novel member of family Flavobacteriaceae isolated from deep seawater of the South China Sea. Antonie Van Leeuwenhoek. 2013;104:1151-7 pubmed publisher
    ..analysis based on the 16S rRNA gene sequences revealed that strain JLT2010(T) belongs to the family Flavobacteriaceae and is most closely related to Ulvibacter antarcticus IMCC3101(T) with 95.7 % similarity...
  40. Zhang R, Tan X, Zhao X, Deng J, Lv J. Moheibacter sediminis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from sediment, and emended descriptions of Empedobacter brevis, Wautersiella falsenii and Weeksella virosa. Int J Syst Evol Microbiol. 2014;64:1481-7 pubmed publisher
    ..analysis based on 16S rRNA gene sequences revealed that strain M0116T was a member of the family Flavobacteriaceae and was most closely related to members of the genera Empedobacter, Wautersiella and Weeksella with 90.5-91...
  41. Zhao H, Ma B, Ji L, Li L, Wang H, Chen D. Coexistence of light-driven Na+ and H+ transport in a microbial rhodopsin from Nonlabens dokdonensis. J Photochem Photobiol B. 2017;172:70-76 pubmed publisher
    ..Therefore, these NdR2 results may provide functional and kinetic insights into the ion transport mechanism in light-driven Na+ pumps. ..
  42. Nedashkovskaya O, Vancanneyt M, De Vos P, Kim S, Lee M, Mikhailov V. Maribacter polysiphoniae sp. nov., isolated from a red alga. Int J Syst Evol Microbiol. 2007;57:2840-3 pubmed
    ..gene sequence of the strain revealed that it formed a distinct lineage within the genus Maribacter, family Flavobacteriaceae, with sequence similarities in the range 94.6-96.9 %...
  43. Nedashkovskaya O, Kukhlevskiy A, Zhukova N. Winogradskyella ulvae sp. nov., an epiphyte of a Pacific seaweed, and emended descriptions of the genus Winogradskyella and Winogradskyella thalassocola, Winogradskyella echinorum, Winogradskyella exilis and Winogradskyella eximia. Int J Syst Evol Microbiol. 2012;62:1450-6 pubmed publisher
    ..nov. is proposed; the type strain is KMM 6390(T) (=KCTC 23626(T)=LMG 26444(T)). Emended descriptions of the genus Winogradskyella and of W. thalassocola, W. echinorum, W. exilis and W. eximia are also provided. ..
  44. Fidalgo C, Martins R, Proença D, Morais P, Alves A, Henriques I. Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia. Int J Syst Evol Microbiol. 2017;67:3004-3009 pubmed publisher
    ..Overall, the analyses showed that strain CPA58T represents a novel species within the genus Zunongwangia, for which the name Zunongwangia endophytica sp. nov. is proposed, with the type strain CPA58T (=CECT 9128T=LMG 29517T). ..
  45. Lau S, Tsoi M, Li X, Plakhotnikova I, Dobretsov S, Wong P, et al. Gramella portivictoriae sp. nov., a novel member of the family Flavobacteriaceae isolated from marine sediment. Int J Syst Evol Microbiol. 2005;55:2497-500 pubmed
    ..The name Gramella portivictoriae sp. nov. is proposed for this bacterium, with UST040801-001T (=NRRL B-41137T [corrected] =JCM 13192T) as the type strain. ..
  46. Kwon K, Yang S, Lee H, Cho J, Kim S. Sufflavibacter maritimus gen. nov., sp. nov., novel Flavobacteriaceae bacteria isolated from marine environments. J Microbiol Biotechnol. 2007;17:1379-84 pubmed
    ..gene sequences revealed that the strains formed a coherent and novel genus-level lineage within the family Flavobacteriaceae. The dominant cellular fatty acids were i-C15:0, 3-OH i-C17:0, and 2-OH i-C15:0 and/or C16:1 omega7c...
  47. Yoon B, Oh D. Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas. Int J Syst Evol Microbiol. 2012;62:1158-64 pubmed publisher
    ..based on nearly complete 16S rRNA gene sequences revealed that strain A11(T) was a member of the family Flavobacteriaceae. Its closest relatives were members of the genera Muricauda, Flagellimonas and Croceitalea (94.4-94...
  48. Feng S, Powell S, Wilson R, Bowman J. Extensive gene acquisition in the extremely psychrophilic bacterial species Psychroflexus torquis and the link to sea-ice ecosystem specialism. Genome Biol Evol. 2014;6:133-48 pubmed publisher
    ..The genomic islands are rich in pseudogenes, insertional elements, and addiction modules, suggesting that gene acquisition is being followed by a process of genome reduction potentially indicative of evolving ecosystem specialism. ..
  49. Lee J, Kang J, Choe H, Seong C. Flavivirga eckloniae sp. nov. and Flavivirga aquimarina sp. nov., isolated from seaweed Ecklonia cava. Int J Syst Evol Microbiol. 2017;67:3089-3094 pubmed publisher
    ..nov. (type strain, ECD14T=KCTC 52352T=JCM 31797T) and Flavivirga aquimarina sp. nov. (type strain, EC2D5T=KCTC 52353T=JCM 31796T) are proposed. ..
  50. Chen W, Sheu F, Sheu S. Aquimarina salinaria sp. nov., a novel algicidal bacterium isolated from a saltpan. Arch Microbiol. 2012;194:103-12 pubmed publisher
    ..16S rRNA gene sequences showed that strain antisso-27(T) belonged to the genus Aquimarina within the family Flavobacteriaceae with relatively low sequence similarities of 94.0-96.6% to other valid Aquimarina spp...
  51. Slenker A, Hess B, Jungkind D, DeSimone J. Fatal case of Weeksella virosa sepsis. J Clin Microbiol. 2012;50:4166-7 pubmed publisher
    ..We describe a fatal case of W. virosa sepsis in a young female with end-stage renal disease, report three additional cases of W. virosa infection, and review the literature regarding this infection. ..
  52. Sakami T, Watanabe T, Kakehi S, Taniuchi Y, Kuwata A. Spatial variation of bacterial community composition at the expiry of spring phytoplankton bloom in Sendai Bay, Japan. Gene. 2016;576:610-7 pubmed publisher
    ..Pyrosequencing analyses of the gene amplicons indicated that Rhodobacteriaceae and Flavobacteriaceae were abundant in the bacterial community, though the most abundant bacterial taxon was SAR11...
  53. Rai S, Niranjan D, Mishra P, Singh N. Antibiotic pressure mediated selection of non-biofilm forming strain of Elizabethkingia meningosepticum causing fatal nosocomial meningitis in a term infant. Indian J Pathol Microbiol. 2013;56:309-11 pubmed publisher
    ..The strain was also phenotypically characterized for beta lactamase production, biofilm forming capability and resistance to in use disinfectants. ..
  54. Kirchman D. New light on an important microbe in the ocean. Proc Natl Acad Sci U S A. 2008;105:8487-8 pubmed publisher
  55. Chen Y, Cui X, Wang Y, Tang S, Zhang Y, Li W, et al. Psychroflexus sediminis sp. nov., a mesophilic bacterium isolated from salt lake sediment in China. Int J Syst Evol Microbiol. 2009;59:569-73 pubmed publisher
    ..nov. is proposed. The type strain is YIM-C238(T) (=CCTCC AA 207030(T)=KCTC 22166(T)). ..
  56. Eckert E, Salcher M, Posch T, Eugster B, Pernthaler J. Rapid successions affect microbial N-acetyl-glucosamine uptake patterns during a lacustrine spring phytoplankton bloom. Environ Microbiol. 2012;14:794-806 pubmed publisher
    ..This indicates that some ACT could profit from a substrate that might in parts have originated from the grazing of protists on their bacterial competitors...
  57. Tinta T, Christiansen L, Konrad A, Liberles D, Turk V, Munch Petersen B, et al. Deoxyribonucleoside kinases in two aquatic bacteria with high specificity for thymidine and deoxyadenosine. FEMS Microbiol Lett. 2012;331:120-7 pubmed publisher
    ..When tens of available aquatic bacteria genomes were examined for the presence of dNKs, a majority had at least a TK1-like gene, but several lacked any dNKs. Apparently, among aquatic bacteria, the role of the dN salvage varies. ..
  58. Liu Z, Li G, Mo Z, Mou H. Molecular cloning, characterization, and heterologous expression of a new ?-carrageenase gene from marine bacterium Zobellia sp. ZM-2. Appl Microbiol Biotechnol. 2013;97:10057-67 pubmed publisher
    ..The ?-carrageenase production of E. coli was 9.0 times higher than that of ZM-2. These results indicate the potential use of the enzyme in the biotechnological industry. ..
  59. Tsai H, Liu Y, Tseng C, Pan M. Genetic variation of the ompA and 16S rRNA genes of Riemerella anatipestifer. Avian Pathol. 2005;34:55-64 pubmed
    ..No apparent cluster was found using the criteria of host, isolate serotype, the year or location of isolation. ..
  60. Maneerat S, Bamba T, Harada K, Kobayashi A, Yamada H, Kawai F. A novel crude oil emulsifier excreted in the culture supernatant of a marine bacterium, Myroides sp. strain SM1. Appl Microbiol Biotechnol. 2006;70:254-9 pubmed
  61. Maekawa K, Kon M, Matsumoto T, Araya K, Lo N. Phylogenetic analyses of fat body endosymbionts reveal differences in invasion times of blaberid wood-feeding cockroaches (Blaberidae: Panesthiinae) into the Japanese archipelago. Zoolog Sci. 2005;22:1061-7 pubmed
  62. Sana B, Ghosh D, Saha M, Mukherjee J. Purification and characterization of an extracellular, uracil specific ribonuclease from a Bizionia species isolated from the marine environment of the Sundarbans. Microbiol Res. 2008;163:31-8 pubmed
    ..This RNase degrades uracil containing nucleic acids only. Our isolate could be a novel renewable source of deoxyribonuclease (DNase)--free RNase enzyme. ..
  63. Gokce I, Oncel M, Ozdemir R, Erdeve O, Oguz S, Canpolat F, et al. Trimethoprim-sulfamethoxazole treatment for meningitis owing to multidrug-resistant Elizabethkingia meningoseptica in an extremely low-birthweight, premature infant. Paediatr Int Child Health. 2012;32:177-9 pubmed publisher
    ..A ventriculoperitoneal shunt was required for hydrocephalus. This is the youngest patient with meningitis caused by E. meningoseptica to have responded to TMP-SMZ. ..
  64. Park S, Jung Y, Yoon J. Algibacter miyuki sp. nov., a member of the family Flavobacteriaceae isolated from leachate of a brown algae reservoir. Antonie Van Leeuwenhoek. 2013;104:253-60 pubmed publisher
    ..nov. is proposed. The type strain is WS-MY6(T) (=KCTC 32382(T) =CECT 8300(T)). ..
  65. Wu G, Liu J, Ye Z. Characterization of phosphobacteria isolated from eutrophic aquatic ecosystems. Mikrobiologiia. 2009;78:809-15 pubmed
    ..This investigation demonstrated that a eutrophic aquatic ecosystem is a selective source of phosphobacteria and the screened phosphobacteria are a potential alternative to the development of biofertilizers. ..
  66. Benedetti P, Rassu M, Pavan G, Sefton A, Pellizzer G. Septic shock, pneumonia, and soft tissue infection due to Myroides odoratimimus: report of a case and review of Myroides infections. Infection. 2011;39:161-5 pubmed publisher
    ..To our knowledge, this is the first description of life-threatening infection caused by this organism in an immunocompetent host. We have also reviewed the medical literature on the genus Myroides. ..
  67. Surendra V, Bhawana P, Suresh K, Srinivas T, Kumar P. Imtechella halotolerans gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from estuarine water. Int J Syst Evol Microbiol. 2012;62:2624-30 pubmed publisher
    ..0%). Phylogenetic analysis showed that strain K1(T) formed a distinct branch within the family Flavobacteriaceae and clustered with the clade comprising species of the genera Zhouia, Coenonia and Capnocytophaga, being ..
  68. Jeong S, Park M, Jin H, Lee K, Park W, Jeon C. Aestuariibaculum suncheonense gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a tidal flat and emended descriptions of the genera Gaetbulibacter and Tamlana. Int J Syst Evol Microbiol. 2013;63:332-8 pubmed publisher
    ..on 16S rRNA gene sequences showed that strain SC17(T) formed a distinct phyletic lineage within the family Flavobacteriaceae and was most closely related to members of the genera Gaetbulibacter and Tamlana with 95.0-95...
  69. Madhaiyan M, Hu C, Jegan Roy J, Kim S, Weon H, Kwon S, et al. Aureimonas jatrophae sp. nov. and Aureimonas phyllosphaerae sp. nov., leaf-associated bacteria isolated from Jatropha curcas L. Int J Syst Evol Microbiol. 2013;63:1702-8 pubmed publisher
    ..nov. is proposed. The type strains of Aureimonas jatrophae sp. nov. and Aureimonas phyllosphaerae sp. nov. are respectively L7-484(T) (?=?KACC 16230(T) ?=?DSM 25025(T)) and L9-753(T) (?=?KACC 16231(T) ?=?DSM 25026(T))...
  70. Lu D, Xia J, Dunlap C, Rooney A, Du Z. Salibacter halophilus gen. nov., sp. nov., isolated from a saltern. Int J Syst Evol Microbiol. 2017;67:1784-1788 pubmed publisher
    ..nov., sp. nov. The type strain of Salibacter halophilus is JZ3C34T (=KCTC 52047T=MCCC 1K02288T). ..
  71. Joung Y, Song J, Lee K, Oh H, Joh K, Cho J. Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater. Int J Syst Evol Microbiol. 2010;60:2061-5 pubmed publisher
    ..0 %) and shared less than 92 % sequence similarity with other members of the family Flavobacteriaceae. Phylogenetic analyses showed that strain HM0024(T) formed an independent phyletic line of descent within ..
  72. Oh Y, Kahng H, Lee Y, Yoon B, Lim S, Jung J, et al. Aquimarina litoralis sp. nov., isolated from a coastal seawater. J Microbiol. 2010;48:433-7 pubmed publisher
    ..on 16S rRNA gene sequences showed that strain CNURIC011(T) belongs to the genus Aquimarina in the family Flavobacteriaceae. 16S rRNA gene sequence analysis revealed that the close relatives of the novel strain are Aquimarina ..
  73. Joung Y, Kim H, Jang T, Ahn T, Joh K. Gramella jeungdoensis sp. nov., isolated from a solar saltern in Korea. J Microbiol. 2011;49:1022-6 pubmed publisher
    ..nov., is proposed. The type strain is HMD3159(T) (=KCTC 32123(T) =CECT 7683(T)). ..
  74. Hameed A, Shahina M, Lin S, Sridhar K, Young L, Lee M, et al. Siansivirga zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing member of the family Flavobacteriaceae isolated from coastal seawater of Taiwan. FEMS Microbiol Lett. 2012;333:37-45 pubmed publisher
    ..7 mol%. Based on polyphasic taxonomy, strain CC-SAMT-1(T) represents a novel genus and species in the family Flavobacteriaceae for which the name Siansivirga zeaxanthinifaciens gen. nov., sp. nov. is proposed...
  75. Giddens J, Lomino J, Amin M, Wang L. Endo-F3 Glycosynthase Mutants Enable Chemoenzymatic Synthesis of Core-fucosylated Triantennary Complex Type Glycopeptides and Glycoproteins. J Biol Chem. 2016;291:9356-70 pubmed publisher
    ..The Endo-F3 mutants represent the first endoglycosidase-based glycosynthases capable of transferring triantennary complex N-glycans, which would be very useful for glycoprotein synthesis and glycosylation remodeling of antibodies. ..
  76. Su Y, Yang X, Wang Y, Liu Y, Ren Q, Zhang X. Muricauda marina sp. nov., isolated from marine snow of Yellow Sea. Int J Syst Evol Microbiol. 2017;67:2446-2451 pubmed publisher
    ..nov. is proposed. The type strain is H19-56T (CGMCC 1.15774T=JCM 31456T=MCCC 1K03196T=KCTC 52374T). ..
  77. Silipo A, Molinaro A, Nazarenko E, Sturiale L, Garozzo D, Gorshkova R, et al. Structural characterization of the carbohydrate backbone of the lipooligosaccharide of the marine bacterium Arenibacter certesii strain KMM 3941(T). Carbohydr Res. 2005;340:2540-9 pubmed
    ..The lipid A is constituted by a bis-phosphorylated disaccharide unit composed by a 2,3-diamino-2,3-dideoxy-beta-d-glucopyranose (DAG) residue as non-reducing end and a GlcN as reducing end. ..
  78. Issack M, Neetoo Y. An outbreak of Elizabethkingia meningoseptica neonatal meningitis in Mauritius. J Infect Dev Ctries. 2011;5:834-9 pubmed
    ..The combination of piperacillin and rifampicin should be considered an option for the treatment of E. meningoseptica neonatal meningitis if supported by properly performed antibiotic susceptibility test results.  ..
  79. Zozaya Valdes E, Roth Schulze A, Egan S, Thomas T. Microbial community function in the bleaching disease of the marine macroalgae Delisea pulchra. Environ Microbiol. 2017;19:3012-3024 pubmed publisher
    ..16S rRNA gene sequences showed that bacteria belonging to the families Rhodobacteraceae, Saprospiraceae and Flavobacteriaceae, including bacteria previously implicated in algal bleaching, to be enriched in diseased D. pulchra...
  80. Abell G, Bowman J. Ecological and biogeographic relationships of class Flavobacteria in the Southern Ocean. FEMS Microbiol Ecol. 2005;51:265-77 pubmed
    ..Sequence data included a large, so far uncultivated, cosmopolitan phylogenetic clade ("DE cluster 2") that is distributed throughout the Southern Ocean. ..
  81. Lee S. Tamlana crocina gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae, isolated from beach sediment in Korea. Int J Syst Evol Microbiol. 2007;57:764-9 pubmed
    ..16S rRNA gene sequence analyses revealed that the isolate belonged to the family Flavobacteriaceae. The closest phylogenetic neighbours of strain HST1-43(T) were members of the genera Algibacter, ..
  82. Mitik Dineva N, Wang J, Truong V, Stoddart P, Malherbe F, Crawford R, et al. Differences in colonisation of five marine bacteria on two types of glass surfaces. Biofouling. 2009;25:621-31 pubmed publisher
  83. Oh Y, Lim S, Kahng H, Yoon B, Oh D, Joa J, et al. Gaetbulibacter jejuensis sp. nov., isolated from seawater. J Microbiol. 2010;48:307-11 pubmed publisher
    ..nov. is proposed. The type strain is CNURIC014(T)(=KCTC 22615(T) =JCM 15976(T)). ..
  84. Hollants J, Leliaert F, Verbruggen H, De Clerck O, Willems A. Host specificity and coevolution of Flavobacteriaceae endosymbionts within the siphonous green seaweed Bryopsis. Mol Phylogenet Evol. 2013;67:608-14 pubmed publisher
    ..Previous studies demonstrated that certain species form close, obligate associations with Flavobacteriaceae. A predominant imprint of host evolutionary history on the presence of these bacteria suggests a highly ..
  85. Xia H, Li X, Liu Q, Miao T, Du Z, Chen G. Salegentibacter echinorum sp. nov., isolated from the sea urchin Hemicentrotus pulcherrimus. Antonie Van Leeuwenhoek. 2013;104:315-20 pubmed publisher
    ..nov. is proposed. The type strain is HD4(T) (=CICC 10466(T) = NRRL B-59666(T)). ..
  86. Wang J, Chou Y, Chou J, Chen C, Chen W. Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella. Int J Syst Evol Microbiol. 2008;58:761-6 pubmed publisher
    ..analyses based on 16S rRNA gene sequences showed that the strain belonged to the genus Tenacibaculum (family Flavobacteriaceae, phylum Bacteroidetes). The closest neighbours were Tenacibaculum lutimaris TF-26T (97...
  87. Yu L, Xu X, Xue C, Chang Y, Ge L, Wang Y, et al. Enzymatic preparation and structural determination of oligosaccharides derived from sea cucumber (Acaudina molpadioides) fucoidan. Food Chem. 2013;139:702-9 pubmed publisher
    ..Employing the degrading enzyme from the marine bacterium strain Flavobacteriaceae CZ1127, sea cucumber (Acaudina molpadioides) fucoidan oligosaccharides were prepared by enzymatic hydrolysis...
  88. Lee H, Kwon K, Yang S, Bae S, Park C, Kim S, et al. Description of Croceitalea gen. nov. in the family Flavobacteriaceae with two species, Croceitalea eckloniae sp. nov. and Croceitalea dokdonensis sp. nov., isolated from the rhizosphere of the marine alga Ecklonia kurome. Int J Syst Evol Microbiol. 2008;58:2505-10 pubmed publisher
    ..8-95.6 % 16S rRNA gene sequence similarity with respect to members of the genus Muricauda in the family Flavobacteriaceae, but formed a distinct phyletic line...
  89. Paul C, Pohnert G. Interactions of the algicidal bacterium Kordia algicida with diatoms: regulated protease excretion for specific algal lysis. PLoS ONE. 2011;6:e21032 pubmed publisher
    ..The K. algicida / algae interactions in the plankton are thus host specific and under the control of previously unidentified factors...
  90. Lee D, Cho S, Kim S, Lee S. Postechiella marina gen. nov., sp. nov., isolated from seawater. Int J Syst Evol Microbiol. 2012;62:1528-35 pubmed publisher
    ..a phylogenetic analysis based on 16S rRNA gene sequences, strain M091(T) formed a lineage within the family Flavobacteriaceae that was distinct from the most closely related genera of Flaviramulus (95...
  91. Collins D, Luxton T, Kumar N, Shah S, Walker V, Shah V. Assessing the impact of copper and zinc oxide nanoparticles on soil: a field study. PLoS ONE. 2012;7:e42663 pubmed publisher
    ..Together, the migration of NPs through soil matrix and the ability of these potential pollutants to influence the composition of microbial community in this field study, cannot help but raise some environmental concerns...
  92. Suganthi R, Shanmuga Priya T, Saranya A, Kaleeswaran T. Relationship between plasmid occurrence and antibiotic resistance in Myroides odoratimimus SKS05-GRD isolated from raw chicken meat. World J Microbiol Biotechnol. 2013;29:983-90 pubmed publisher
    ..odoratimimus SKS05-GRD showed sensitivity to amikacin, gentamicin and kanamycin confirming that resistance to these three antibiotics is plasmid mediated and other antibiotic resistance are chromosomal mediated...