Research Topics
Species | Pseudomonas sp. ADPSummaryAlias: Pseudomonas ADP, Pseudomonas sp. (strain ADP), Pseudomonas sp. strain ADP, Pseudomonas sp. DSM 11735 Top Publications
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Publications
Cloning, characterization, and expression of a gene region from Pseudomonas sp. strain ADP involved in the dechlorination of atrazineM L De Souza
Department of Biochemistry, University of Minnesota, St Paul 55108, USA
Appl Environ Microbiol 61:3373-8. 1995..strain ADP. A 0.6-kb ApaI-PstI fragment from pMD4, containing the putative atrazine chlorohydrolase gene, hybridized to DNA from atrazine-degrading bacteria isolated in Switzerland and Louisiana.(ABSTRACT TRUNCATED AT 250 WORDS)..
Bioaccessibility of environmentally aged 14C-atrazine residues in an agriculturally used soil and its particle-size aggregatesNicolai D Jablonowski
Forschungszentrum Julich GmbH, Institute of Chemistry and Dynamics of the Geosphere, ICG 4 Agrosphere, 52425 Julich, Germany
Environ Sci Technol 42:5904-10. 2008..7% in soil after 23 days following incubation with Pseudomonas sp. strain ADP. These results show that long-term aged 14C-atrazine residues are still partly accessible to the atrazine degrading microorganism Pseudomonas sp. strain ADP...
Evaluating a bioremediation tool for atrazine contaminated soils in open soil microcosms: the effectiveness of bioaugmentation and biostimulation approachesD Lima
Institute for Biotechnology and Bioengineering, Centre for Biological and Chemical Engineering, Instituto Superior Tecnico, Av Rovisco Pais, 1049 001 Lisboa, Portugal
Chemosphere 74:187-92. 2009..We suggest that this bioremediation tool may be valuable for efficient removal of atrazine from contaminated field soils thus minimizing atrazine and its chlorinated derivatives from reaching water compartments...- Isolation and characterization of atrazine-degrading Arthrobacter sp. AD26 and use of this strain in bioremediation of contaminated soilQingyan Li
Department of Microbiology, Ministry of Education, Nankai University, Tianjin 300071, China
J Environ Sci (China) 20:1226-30. 2008.... - Atrazine biodegradation modulated by clays and clay/humic acid complexesPascale Besse-Hoggan
Laboratoire de Synthèse et Etude de Systèmes à Intérêt Biologique, UMR CNRS 6504, Universite Blaise Pascal, 63177 Aubiere Cedex, France
Environ Pollut 157:2837-44. 2009..More surprisingly, it increased dramatically with LDH. Adsorption of bacterial cells on clay particles facilitates the degradation of non-sorbed chemical, and should be considered for predicting pesticide fate in the environment... - Activation and repression of a sigmaN-dependent promoter naturally lacking upstream activation sequencesOdil Porrúa
Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, Carretera de Utrera, Km 1 41013 Sevilla, Spain
Mol Microbiol 73:419-33. 2009..There are no previous reports of a similar mechanism for repression of sigma(N)-dependent transcription... - Bacterial chemotaxis to atrazine and related s-triazinesXianxian Liu
Department of Microbiology, College of Biological Sciences, University of California, Davis, California 95616, USA
Appl Environ Microbiol 75:5481-8. 2009..strain ADP to cytosine, and cytosine inhibited chemotaxis to atrazine, suggesting that pyrimidines and s-triazines are detected by the same chemoreceptor... - Distinct roles for NtrC and GlnK in nitrogen regulation of the Pseudomonas sp. strain ADP cyanuric acid utilization operonVicente García-González
Departamento de Biología Molecular e Ingeniería Bioquímica, Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, Carretera de Utrera, km 1, Seville, Spain
FEMS Microbiol Lett 300:222-9. 2009..The present data and our previous results are integrated in a regulatory circuit that describes all the known responses of the atzDEF operon... - The role of a groundwater bacterial community in the degradation of the herbicide terbuthylazineAnna Barra Caracciolo
Water Research Institute, National Research Council, Monterotondo, Rome, Italy
FEMS Microbiol Ecol 71:127-36. 2010..The two bacteria isolated could facilitate the implementation of effective bioremediation protocols, especially in the case of the significant amounts of herbicide that can be found in groundwater as a result of accidental spills... - C and N isotope fractionation suggests similar mechanisms of microbial atrazine transformation despite involvement of different enzymes (AtzA and TrzN)Armin H Meyer
Institute of Groundwater Ecology, Helmholtz Zentrum Munchen, 85764 Neuherberg, Germany
Environ Sci Technol 43:8079-85. 2009..g., with H(+)) prior to nucleophilic aromatic substitution, giving the first detailed mechanistic insight into this important enzymatic reaction... - Regulation of the atrazine-degradative genes in Pseudomonas sp. strain ADPFernando Govantes
Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, Carretera de Utrera, km 1, Seville, Spain
FEMS Microbiol Lett 310:1-8. 2010.... - Isolation and characterization of an Arthrobacter sp. strain HB-5 that transforms atrazineJinhua Wang
College of Resources and Environment, Shandong Agriculture University, 271018 Taian, China
Environ Geochem Health 33:259-66. 2011..Strain HB-5 first metabolizes atrazine to yield hydroxyatrazine. Then, the bacterium metabolizes hydroxyatrazine to cyanuric acid, but could not mineralize atrazine... - Transgenic tobacco plants expressing atzA exhibit resistance and strong ability to degrade atrazineHuizhuan Wang
Laboratory of Molecular Genetics, College of Life Sciences, Nankai University, Tianjin, People s Republic of China
Plant Cell Rep 29:1391-9. 2010..The transgenic tobacco lines developed could be useful for phytoremediation of atrazine-contaminated soil and water... - Bioavailability of organoclay formulations of atrazine in soilCarmen Trigo
Instituto de Recursos Naturales y Agrobiología de Sevilla IRNAS, CSIC, Avenida Reina Mercedes 10, P O Box 1052, 41080 Sevilla, Spain
J Agric Food Chem 58:11857-63. 2010.... - Atrazine biodegradation in the lab and in the field: enzymatic activities and gene regulationFernando Govantes
Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, and Departamento de Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide, Spain
Microb Biotechnol 2:178-85. 2009.... - Evaluation of PCR-based quantification techniques to estimate the abundance of atrazine chlorohydrolase gene atzA in rhizosphere soilsBrian M Thompson
Dep of Veterinary Pathobiology, College of Veterinary Medicine, and Bond Life Sciences Center, Univ of Missouri, Columbia, MO 65211, USA
J Environ Qual 39:1999-2005. 2010..The methodology contained herein will allow for optimal monitoring of atzA in rhizosphere soil with or without the addition of biodegradative Pseudomonas sp. strain ADP of bacteria... - Enhancing atrazine biodegradation by Pseudomonas sp. strain ADP adsorption to Layered Double Hydroxide bionanocompositesTatiana Alekseeva
Institute of Physical, Chemical and Biological Problems of Soil Science, Russian Academy of Sciences, Pushchino, Moscow Region, Russia
J Hazard Mater 191:126-35. 2011..The maximum biodegradation rate was obtained in the case of a 100 mg/mL Mg(2)Al LDH suspension (26 times higher than that obtained with cells alone)... - [High throughput screening atrazine chlorohydrolase mutants with enhanced activity through Haematococcus pluvialis expression system]Huizhuan Wang
Laboratory of Molecular Genetics, College of Life Sciences, Nankai University, Tianjin 300071, China
Sheng Wu Gong Cheng Xue Bao 27:620-8. 2011..8-2.6 fold with 2 mg/L atrazine. These results indicated that Haematococcus pluvialis expression system is an ideal high throughput screening system for directed evolution of atrazine chlorohydrolase... - Isolation and characterization of a novel simazine-degrading bacterium from agricultural soil of central Chile, Pseudomonas sp. MHP41Marcela Hernandez
Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Millennium Nucleus of Microbial Ecology and Environmental Microbiology and Biotechnology EMBA, Departamento de Quimica, Universidad Tecnica Federico Santa Maria, Valparaiso, Chile
FEMS Microbiol Lett 286:184-90. 2008..This is the first s-triazine-degrading bacterium isolated in South America. Strain MHP41 is a potential biocatalyst for the remediation of s-triazine-contaminated environments... - Availability of triazine herbicides in aged soils amended with olive oil mill wasteAlegria Cabrera
Instituto de Recursos Naturales y Agrobiologia de Sevilla INRAS CSIC, Sevilla, Spain
J Agric Food Chem 56:4112-9. 2008..In summary, addition of alperujo to the soils studied was shown to increase triazine herbicides sorption and hence to reduce its availability and potential to leach... - The atzB gene of Pseudomonas sp. strain ADP encodes the second enzyme of a novel atrazine degradation pathwayK L Boundy-Mills
Department of Soil, Water, and Climate, University of Minnesota, St Paul 55108, USA
Appl Environ Microbiol 63:916-23. 1997..The atzA and atzB genes catalyze the first two steps of the metabolic pathway in a bacterium that rapidly metabolizes atrazine to carbon dioxide, ammonia, and chloride... - AtzC is a new member of the amidohydrolase protein superfamily and is homologous to other atrazine-metabolizing enzymesM J Sadowsky
Department of Microbiology, Institute for Advanced Studies in Biological Process Technology, University of Minnesota, St Paul 55108, USA
J Bacteriol 180:152-8. 1998..Overall, the data suggest that AtzA, AtzB, and AtzC diverged from a common ancestor and, by random events, have been reconstituted onto an atrazine catabolic plasmid... - Characterization of S-triazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soilsE Topp
Agriculture and Agri Food Canada, London, Ontario
Appl Environ Microbiol 66:3134-41. 2000..In summary, an atrazine-metabolizing Nocardioides sp. widely distributed in agricultural soils degrades a range of s-triazine herbicides by means of a novel s-triazine hydrolase... - Substrate specificity of atrazine chlorohydrolase and atrazine-catabolizing bacteriaJ L Seffernick
Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
Appl Environ Microbiol 66:4247-52. 2000..strain ADP. This suggests that either (i) another enzyme(s) is present which confers the broader substrate range or (ii) the AtzA itself has a broader substrate range... - Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADPB Martinez
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
J Bacteriol 183:5684-97. 2001..These results begin to provide insight into how plasmids are structured, and thus evolve, to encode the catabolism of compounds recently added to the biosphere... - Biodegradation of atrazine and related s-triazine compounds: from enzymes to field studiesL P Wackett
Department of Biochemistry, Molecular Biology and Biophysics and BioTechnology Institute, University of Minnesota, St Paul 55108, USA
Appl Microbiol Biotechnol 58:39-45. 2002..The method was used for cleaning up a spill of 1,000 pounds of atrazine to attain a level of herbicide acceptable to regulatory agencies... - Microbial aspects of atrazine degradation in natural environmentsT Komang Ralebits
International Centre for Waste Technology Africa, School of Applied Environmental Sciences, University of Natal, Scottsville, South Africa
Biodegradation 13:11-9. 2002.... - Biological granulated activated carbon fluidized bed reactor for atrazine remediationM Herzberg
Faculty of Civil and Environmental Engineering, Technion, Haifa, Israel
Water Sci Technol 49:215-22. 2004.... - Purification and characterization of allophanate hydrolase (AtzF) from Pseudomonas sp. strain ADPNir Shapir
Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 1479 Gortner Avenue, St Paul, Minnesota 55108, USA
J Bacteriol 187:3731-8. 2005..Thus, AtzF affects the cleavage of three carbon-to-nitrogen bonds via a mechanism similar to that of enzymes catalyzing single-amide-bond cleavage reactions. AtzF orthologs appear to be widespread among bacteria... - Characterization of Arthrobacter nicotinovorans HIM, an atrazine-degrading bacterium, from agricultural soil New ZealandJackie Aislabie
Landcare Research, Private Bag 3127, Hamilton 2010, New Zealand
FEMS Microbiol Ecol 52:279-86. 2005..nicotinovorans HIM. Cloning of the atzABC genes revealed significant homology (>99%) with the atrazine degradation genes of Pseudomonas sp. strain ADP. The atrazine degradation genes were held on a 96 kbp plasmid... - Characterisation of new strains of atrazine-degrading Nocardioides sp. isolated from Japanese riverbed sediment using naturally derived river ecosystemKoji Satsuma
Chemistry Division, The Institute of Environmental Toxicology, 303 0043 Ibaraki, Japan
Pest Manag Sci 62:340-9. 2006..atrazine chlorohydrolase from Nocardioides C190) and atzC (N-isopropylammelide isopropyl amidohydrolase from Pseudomonas ADP)... - Purification and characterization of TrzF: biuret hydrolysis by allophanate hydrolase supports growthNir Shapir
Department of Biochemistry, Molecular Biology and Biophysics, 140 Gortner Lab, 1479 Gortner Ave, University of Minnesota, St Paul, MN 55108, USA
Appl Environ Microbiol 72:2491-5. 2006..The biuret hydrolyzing activity of TrzF might also be physiologically relevant in native strains. E. cloacae strain 99 grows on cyanuric acid with a significant accumulation of biuret... - Isolation and characterization of a novel simazine-degrading beta-proteobacterium and detection of genes encoding s-triazine-degrading enzymesAkio Iwasaki
Kowa Research Institute, Kowa Co, Ltd, 1 25 5 Kannondai, Tsukuba, Ibaraki 305 0856, Japan
Pest Manag Sci 63:261-8. 2007..strain ADP, and the 1526-nucleotide downstream fragment showed 99.8% sequence similarity to the atzB gene of the pseudomonad... - Hydroxyatrazine N-ethylaminohydrolase (AtzB): an amidohydrolase superfamily enzyme catalyzing deamination and dechlorinationJennifer L Seffernick
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 140 Gortner Lab, 1479 Gortner Ave, St Paul, MN 55108, USA
J Bacteriol 189:6989-97. 2007..This differs from AtzA and TrzN, which do not catalyze deamination reactions, and AtzC, which is not known to catalyze dechlorination reactions... - The LysR-type regulator AtzR binding site: DNA sequences involved in activation, repression and cyanuric acid-dependent repositioningOdil Porrúa
Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, and Departamento de Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide
Mol Microbiol 66:410-27. 2007..Deletion of the ABS only provokes a modest decrease in AtzR affinity for the promoter region in vitro, but abolishes repression of PatzR in vivo. Involvement of the ABS in autorepression has not been previously reported... - Fitness drift of an atrazine-degrading population under atrazine selection pressureMarion Devers
INRA, Universite de Bourgogne, UMR1229 Microbiologie du Sol et de l Environnement, CMSE, 17 rue Sully, BP 86510, F 21065 Dijon, France
Environ Microbiol 10:676-84. 2008.... - Determining design and scale-up parameters for degradation of atrazine with suspended Pseudomonas sp. ADP in aqueous bioreactorsNicole Biglione
The Department of Chemical and Biochemical Engineering and Center for Biocatalysis and Bioprocessing, The University of Iowa, Iowa City, Iowa 52242, USA
Biotechnol Prog 24:588-92. 2008..Error analysis on calculated values of Ks were found to impact estimates in atrazine concentration by as much as two orders of magnitude, depending on the reactor design, illustrating the importance of these factors in reactor scale-up... - In vitro evolution of an atrazine-degrading population under cyanuric acid selection pressure: evidence for the selective loss of a 47 kb region on the plasmid ADP1 containing the atzA, B and C genesF Changey
INRA, Universite de Bourgogne, Microbiologie du Sol et de l Environnement, 17 rue Sully, 21065 Dijon Cedex, France
Gene 490:18-25. 2011....