Pseudomonas sp. ADP

Summary

Alias: Pseudomonas ADP, Pseudomonas sp. (strain ADP), Pseudomonas sp. strain ADP, Pseudomonas sp. DSM 11735

Top Publications

  1. pmc On the origins of cyanuric acid hydrolase: purification, substrates, and prevalence of AtzD from Pseudomonas sp. strain ADP
    Isaac Fruchey
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
    Appl Environ Microbiol 69:3653-7. 2003
  2. pmc Assessment of bioavailability of soil-sorbed atrazine
    Jeong Hun Park
    Department of Civil and Environmental Engineering, Michigan State University, East Lansing, Michigan 48824, USA
    Appl Environ Microbiol 69:3288-98. 2003
  3. ncbi Patchy biofilm coverage can explain the potential advantage of BGAC reactors
    Moshe Herzberg
    Faculty of Civil and Environmental Engineering, Technion, Haifa 32000, Israel
    Environ Sci Technol 37:4274-80. 2003
  4. ncbi Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in two bacterial strains isolated from soil
    Marion Devers
    INRA CMSE, UMR 1229 INRA Université de Bourgogne, Microbiologie et Géochimie des Sols, 17 rue Sully, BP 86510, F 21065 Dijon Cedex, France
    J Microbiol Methods 56:3-15. 2004
  5. ncbi Combined bioaugmentation and biostimulation to cleanup soil contaminated with high concentrations of atrazine
    Elisabete Silva
    Biological Sciences Research Group, Centre for Biological and Chemical Engineering, Instituto Superior Tecnico, Lisbon, Portugal
    Environ Sci Technol 38:632-7. 2004
  6. pmc Simultaneous degradation of atrazine and phenol by Pseudomonas sp. strain ADP: effects of toxicity and adaptation
    Grit Neumann
    Department of Bioremediation, Centre for Environmental Research UFZ Leipzig Halle, 04318 Leipzig, Germany
    Appl Environ Microbiol 70:1907-12. 2004
  7. ncbi Solvent extraction characterization of bioavailability of atrazine residues in soils
    Enrique Barriuso
    Laboratoire des Sols, INRA, 78850 Thiverval Grignon, France
    J Agric Food Chem 52:6552-6. 2004
  8. ncbi Investigating the in situ degradation of atrazine in groundwater
    Robert Pearson
    School of Water Sciences, Cranfield University, Cranfield, Bedfordshire MK43 0AL, UK
    Pest Manag Sci 62:299-306. 2006
  9. ncbi Influence of soil aging on sorption and bioavailability of simazine
    Jussara B Regitano
    Laboratorio de Ecotoxicologia, Centro de Energia Nuclear na Agricultura, Universidade de Sao Paulo, Caixa Postal 96, Piracicaba, SP 13400 970, Brazil
    J Agric Food Chem 54:1373-9. 2006
  10. doi An A-tract at the AtzR binding site assists DNA binding, inducer-dependent repositioning and transcriptional activation of the PatzDEF promoter
    Odil Porrúa
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide Consejo Superior de Investigaciones Científicas Junta de Andalucía, Carretera de Utrera, km 1, 41013, Sevilla, Spain Departamento de Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide, Carretera de Utrera, km 1, 41013, Sevilla, Spain
    Mol Microbiol 90:72-87. 2013

Scientific Experts

  • Cristina A Viegas
  • Sónia Chelinho
  • Anna Barra Caracciolo
  • Pascale Besse-Hoggan
  • Nicolai David Jablonowski
  • Koji Satsuma
  • M J Sadowsky
  • Shiri Klein
  • T K Ralebitso
  • Jackie Aislabie
  • M Herzberg
  • L P Wackett
  • E Topp
  • Fernando Govantes
  • Odil Porrúa
  • Eduardo Santero
  • Vicente García-González
  • Nir Shapir
  • Huizhuan Wang
  • William C Koskinen
  • Marion Devers
  • Ana Isabel Platero
  • Jennifer L Seffernick
  • Fabrice Martin-Laurent
  • Tatiana Alekseeva
  • F Changey
  • Jinhua Wang
  • Victoria Shingler
  • Jeffrey P Osborne
  • Xiwen Chen
  • Xiaohua Hao
  • Gilbert Johnson
  • Defu Chen
  • Carmen Trigo
  • Brian M Thompson
  • Alicia Jiménez-Fernández
  • Manuel García-Jaramillo
  • D Lima
  • Armin H Meyer
  • Xianxian Liu
  • Nicole Biglione
  • Marcela Hernandez
  • Qingyan Li
  • Alegria Cabrera
  • Akio Iwasaki
  • Anne Kersanté
  • A C Moran
  • Robert Pearson
  • Jussara B Regitano
  • Guy Soulas
  • Elisabete Silva
  • Grit Neumann
  • Enrique Barriuso
  • Richard G Burns
  • Liz J Shaw
  • Shaohan Zhao
  • Isaac Fruchey
  • Helle Johannesen
  • Jeong Hun Park
  • T Komang Ralebits
  • Lisa C Strong
  • Ana I Platero
  • Aroa López-Sánchez
  • B Martinez
  • Jun Wang
  • Qi Wang
  • Claude Forano
  • F Martin-Laurent
  • Hui Xie
  • Vanessa Prevot
  • M Devers-Lamrani
  • Rusong Zhao
  • Aiju Liu
  • N Rouard
  • Martine Sancelme
  • Tingting Ma
  • Lusheng Zhu
  • Ting Jiang
  • Rafael Celis
  • Hsin Yeh Hsieh
  • Juan Cornejo
  • Xuguang Xing
  • Robert J Kremer
  • J L Seffernick
  • Chung Ho Lin
  • María C Hermosín
  • Robert N Lerch
  • Harold E Garrett
  • A M Fialho
  • Inés Canosa

Detail Information

Publications61

  1. pmc On the origins of cyanuric acid hydrolase: purification, substrates, and prevalence of AtzD from Pseudomonas sp. strain ADP
    Isaac Fruchey
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
    Appl Environ Microbiol 69:3653-7. 2003
    ..Other cyclic amidases were found not to hydrolyze cyanuric acid. Ten bacteria that use cyanuric acid as a sole nitrogen source for growth were found to contain either atzD or trzD, but not both genes...
  2. pmc Assessment of bioavailability of soil-sorbed atrazine
    Jeong Hun Park
    Department of Civil and Environmental Engineering, Michigan State University, East Lansing, Michigan 48824, USA
    Appl Environ Microbiol 69:3288-98. 2003
    ..Characteristics of high sorbed-phase concentration, chemotaxis, and attachment of cells to soil particles seem to contribute to the bioavailability of soil-sorbed atrazine...
  3. ncbi Patchy biofilm coverage can explain the potential advantage of BGAC reactors
    Moshe Herzberg
    Faculty of Civil and Environmental Engineering, Technion, Haifa 32000, Israel
    Environ Sci Technol 37:4274-80. 2003
    ..between a nonadsorbing granular carbon carrier and a GAC carrier with an atrazine degrading biofilm (Pseudomonas ADP) under conditions of atrazine partial penetration in the biofilm showed higher biodegradation and lower ..
  4. ncbi Real-time reverse transcription PCR analysis of expression of atrazine catabolism genes in two bacterial strains isolated from soil
    Marion Devers
    INRA CMSE, UMR 1229 INRA Université de Bourgogne, Microbiologie et Géochimie des Sols, 17 rue Sully, BP 86510, F 21065 Dijon Cedex, France
    J Microbiol Methods 56:3-15. 2004
    ..atz gene expression patterns are different in Pseudomonas ADP and C...
  5. ncbi Combined bioaugmentation and biostimulation to cleanup soil contaminated with high concentrations of atrazine
    Elisabete Silva
    Biological Sciences Research Group, Centre for Biological and Chemical Engineering, Instituto Superior Tecnico, Lisbon, Portugal
    Environ Sci Technol 38:632-7. 2004
    ..We suggest our observations may be used as a framework for rational bioremediation of field soils contaminated with atrazine...
  6. pmc Simultaneous degradation of atrazine and phenol by Pseudomonas sp. strain ADP: effects of toxicity and adaptation
    Grit Neumann
    Department of Bioremediation, Centre for Environmental Research UFZ Leipzig Halle, 04318 Leipzig, Germany
    Appl Environ Microbiol 70:1907-12. 2004
    ....
  7. ncbi Solvent extraction characterization of bioavailability of atrazine residues in soils
    Enrique Barriuso
    Laboratoire des Sols, INRA, 78850 Thiverval Grignon, France
    J Agric Food Chem 52:6552-6. 2004
    ..01 M CaCl2/methanol extractable atrazine in aged soils may be used to estimate bioavailable residues, and this technique may be useful to determine the bioavailability of other compounds in soils, especially other triazine herbicides...
  8. ncbi Investigating the in situ degradation of atrazine in groundwater
    Robert Pearson
    School of Water Sciences, Cranfield University, Cranfield, Bedfordshire MK43 0AL, UK
    Pest Manag Sci 62:299-306. 2006
    ..These results indicated that no acclimatised bacterial community featuring positive degraders to the herbicide atrazine had become established within this chalk aquifer in response to the trace levels encountered...
  9. ncbi Influence of soil aging on sorption and bioavailability of simazine
    Jussara B Regitano
    Laboratorio de Ecotoxicologia, Centro de Energia Nuclear na Agricultura, Universidade de Sao Paulo, Caixa Postal 96, Piracicaba, SP 13400 970, Brazil
    J Agric Food Chem 54:1373-9. 2006
    ..strain ADP. Consequently, 0.01 M CaCl2/methanol-extractable simazine in aged soils can be used to estimate bioavailable residues. This technique may be useful in determining the bioavailability of other s-triazine compounds in soils...
  10. doi An A-tract at the AtzR binding site assists DNA binding, inducer-dependent repositioning and transcriptional activation of the PatzDEF promoter
    Odil Porrúa
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide Consejo Superior de Investigaciones Científicas Junta de Andalucía, Carretera de Utrera, km 1, 41013, Sevilla, Spain Departamento de Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide, Carretera de Utrera, km 1, 41013, Sevilla, Spain
    Mol Microbiol 90:72-87. 2013
    ..Conservation of this motif in several binding sites of LysR-type regulators suggests that this mechanism may be shared by other proteins in this family. ..
  11. ncbi Influence of microbial inoculation (Pseudomonas sp. strain ADP), the enzyme atrazine chlorohydrolase, and vegetation on the degradation of atrazine and metolachlor in soil
    Shaohan Zhao
    ABC Laboratories, 7200 East ABC Lane, Columbia, Missouri, USA
    J Agric Food Chem 51:3043-8. 2003
    ..This indicates that aging significantly decreased the bioavailability of atrazine. Vegetation significantly decreased the concentration of metolachlor. However, vegetation showed no effect on the degradation of atrazine...
  12. ncbi Mineralization of aged atrazine, terbuthylazine, 2,4-D, and mecoprop in soil and aquifer sediment
    Helle Johannesen
    Department of Geochemistry, Geological Survey of Denmark and Greenland, Oster Voldgade 10, DK 1350 Copenhagen, Denmark
    Environ Toxicol Chem 22:722-9. 2003
    ..With 2,4-D, the effect of aging in soil on mineralization by the enriched culture was much smaller. Aging had no effect on mineralization of mecoprop in soil or on mineralization of any of the herbicides in aquifer sediment...
  13. pmc Arthrobacter aurescens TC1 metabolizes diverse s-triazine ring compounds
    Lisa C Strong
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St Paul 55108, USA
    Appl Environ Microbiol 68:5973-80. 2002
    ..Ethylamine and isopropylamine each served as the source of carbon and nitrogen for growth. PCR experiments identified genes with high sequence identity to atzB and atzC, but not to atzA, from Pseudomonas sp. strain ADP...
  14. ncbi Atrazine chlorohydrolase from Pseudomonas sp. strain ADP is a metalloenzyme
    Jennifer L Seffernick
    Department of Biochemistry, Molecular Biology, and Biophysics, Center for Microbial and Plant Genomics, University of Minnesota, St Paul, Minnesota 55108, USA
    Biochemistry 41:14430-7. 2002
    ..Taken together, these data indicate that AtzA is a functional metalloenzyme, making this the first report, to our knowledge, of a metal-dependent dechlorinating enzyme that proceeds via a hydrolytic mechanism...
  15. pmc Purification, substrate range, and metal center of AtzC: the N-isopropylammelide aminohydrolase involved in bacterial atrazine metabolism
    Nir Shapir
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
    J Bacteriol 184:5376-84. 2002
    ....
  16. ncbi Simazine treatment history determines a significant herbicide degradation potential in soils that is not improved by bioaugmentation with Pseudomonas sp. ADP
    A C Moran
    Laboratorio de Microbiologia, Departamento de Genetica Molecular y Microbiologia, Pontificia Universidad Catolica de Chile, Santiago, Chile
    J Appl Microbiol 101:26-35. 2006
    ..To study biological removal of the herbicide simazine in soils with different history of herbicide treatment and to test bioaugmentation with a simazine-degrading bacterial strain...
  17. pmc Transcriptional organization and regulatory elements of a Pseudomonas sp. strain ADP operon encoding a LysR-type regulator and a putative solute transport system
    Ana Isabel Platero
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide, Consejo Superior de Investigaciones Cientificas, Junta de Andalucia, Seville, Spain
    J Bacteriol 194:6560-73. 2012
    ..Our results suggest a regulatory model in which NtrC activates PatzT transcription via DNA looping, while AtzR acts as an antiactivator that diminishes expression by interfering with the activation process...
  18. doi Encapsulation of Pseudomonas sp. ADP cells in electrospun microtubes for atrazine bioremediation
    Shiri Klein
    Israel Institute of Technology, 32000 Haifa, Israel
    J Ind Microbiol Biotechnol 39:1605-13. 2012
    ..The loss of atrazine degrading capacity was regained following an additional cell-growth period...
  19. ncbi Interactions of earthworms with Atrazine-degrading bacteria in an agricultural soil
    Anne Kersanté
    CNRS Universite de Rennes 1, UMR 6553 Ecobio, IFR CAREN, Rennes, France
    FEMS Microbiol Ecol 57:192-205. 2006
    ..This study illustrates the regulation produced by the earthworms on functional bacterial communities involved in the fate of organic pollutants in soils...
  20. pmc Regulation of the Pseudomonas sp. strain ADP cyanuric acid degradation operon
    Vicente García-González
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide, Carretera de Utrera, km 1, 41013, Seville, Spain
    J Bacteriol 187:155-67. 2005
    ..AtzR activity is in turn modulated by the presence of cyanuric acid and by a nitrogen limitation signal transduced by the Ntr system...
  21. pmc Does S-metolachlor affect the performance of Pseudomonas sp. strain ADP as bioaugmentation bacterium for atrazine-contaminated soils?
    Cristina A Viegas
    Department of Bioengineering, Instituto Superior Tecnico, Technical University of Lisbon, Lisboa, Portugal
    PLoS ONE 7:e37140. 2012
    ..We suggest that this high toxicity may be due to the S-MET and/or its metabolites remaining in the soil...
  22. doi Semifield testing of a bioremediation tool for atrazine-contaminated soils: evaluating the efficacy on soil and aquatic compartments
    Sónia Chelinho
    IMAR CMA Department of Life Sciences, University of Coimbra, Coimbra, Portugal
    Environ Toxicol Chem 31:1564-72. 2012
    ..ADP + CIT. In aqueous samples obtained from the bioremediated soils, the microalgal growth was similar to the control for runoff samples and slightly lower than control (by 11%) for eluates...
  23. pmc Nitrogen control of atrazine utilization in Pseudomonas sp. strain ADP
    Vicente García-González
    Centro Andaluz de Biología del Desarrollo and Departamento de Ciencias Ambientales, Universidad Pablo de Olavide, 41013 Seville, Spain
    Appl Environ Microbiol 69:6987-93. 2003
    ....
  24. ncbi Evaluation of PCR-based quantification techniques to estimate the abundance of atrazine chlorohydrolase gene atzA in rhizosphere soils
    Brian M Thompson
    Dep of Veterinary Pathobiology, College of Veterinary Medicine, and Bond Life Sciences Center, Univ of Missouri, Columbia, MO 65211, USA
    J Environ Qual 39:1999-2005. 2010
    ..The methodology contained herein will allow for optimal monitoring of atzA in rhizosphere soil with or without the addition of biodegradative Pseudomonas sp. strain ADP of bacteria...
  25. doi C and N isotope fractionation suggests similar mechanisms of microbial atrazine transformation despite involvement of different enzymes (AtzA and TrzN)
    Armin H Meyer
    Institute of Groundwater Ecology, Helmholtz Zentrum Munchen, 85764 Neuherberg, Germany
    Environ Sci Technol 43:8079-85. 2009
    ..g., with H(+)) prior to nucleophilic aromatic substitution, giving the first detailed mechanistic insight into this important enzymatic reaction...
  26. doi The role of a groundwater bacterial community in the degradation of the herbicide terbuthylazine
    Anna Barra Caracciolo
    Water Research Institute, National Research Council, Monterotondo, Rome, Italy
    FEMS Microbiol Ecol 71:127-36. 2010
    ..The two bacteria isolated could facilitate the implementation of effective bioremediation protocols, especially in the case of the significant amounts of herbicide that can be found in groundwater as a result of accidental spills...
  27. doi Distinct roles for NtrC and GlnK in nitrogen regulation of the Pseudomonas sp. strain ADP cyanuric acid utilization operon
    Vicente García-González
    Departamento de Biología Molecular e Ingeniería Bioquímica, Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, Carretera de Utrera, km 1, Seville, Spain
    FEMS Microbiol Lett 300:222-9. 2009
    ..The present data and our previous results are integrated in a regulatory circuit that describes all the known responses of the atzDEF operon...
  28. pmc Bacterial chemotaxis to atrazine and related s-triazines
    Xianxian Liu
    Department of Microbiology, College of Biological Sciences, University of California, Davis, California 95616, USA
    Appl Environ Microbiol 75:5481-8. 2009
    ..strain ADP to cytosine, and cytosine inhibited chemotaxis to atrazine, suggesting that pyrimidines and s-triazines are detected by the same chemoreceptor...
  29. doi Activation and repression of a sigmaN-dependent promoter naturally lacking upstream activation sequences
    Odil Porrúa
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, Carretera de Utrera, Km 1 41013 Sevilla, Spain
    Mol Microbiol 73:419-33. 2009
    ..There are no previous reports of a similar mechanism for repression of sigma(N)-dependent transcription...
  30. doi Atrazine biodegradation modulated by clays and clay/humic acid complexes
    Pascale Besse-Hoggan
    Laboratoire de Synthèse et Etude de Systèmes à Intérêt Biologique, UMR CNRS 6504, Universite Blaise Pascal, 63177 Aubiere Cedex, France
    Environ Pollut 157:2837-44. 2009
    ..More surprisingly, it increased dramatically with LDH. Adsorption of bacterial cells on clay particles facilitates the degradation of non-sorbed chemical, and should be considered for predicting pesticide fate in the environment...
  31. doi Regulation of the atrazine-degradative genes in Pseudomonas sp. strain ADP
    Fernando Govantes
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, Carretera de Utrera, km 1, Seville, Spain
    FEMS Microbiol Lett 310:1-8. 2010
    ....
  32. doi Isolation and characterization of an Arthrobacter sp. strain HB-5 that transforms atrazine
    Jinhua Wang
    College of Resources and Environment, Shandong Agriculture University, 271018 Taian, China
    Environ Geochem Health 33:259-66. 2011
    ..Strain HB-5 first metabolizes atrazine to yield hydroxyatrazine. Then, the bacterium metabolizes hydroxyatrazine to cyanuric acid, but could not mineralize atrazine...
  33. doi Enhancing atrazine biodegradation by Pseudomonas sp. strain ADP adsorption to Layered Double Hydroxide bionanocomposites
    Tatiana Alekseeva
    Institute of Physical, Chemical and Biological Problems of Soil Science, Russian Academy of Sciences, Pushchino, Moscow Region, Russia
    J Hazard Mater 191:126-35. 2011
    ..The maximum biodegradation rate was obtained in the case of a 100 mg/mL Mg(2)Al LDH suspension (26 times higher than that obtained with cells alone)...
  34. doi Transgenic tobacco plants expressing atzA exhibit resistance and strong ability to degrade atrazine
    Huizhuan Wang
    Laboratory of Molecular Genetics, College of Life Sciences, Nankai University, Tianjin, People s Republic of China
    Plant Cell Rep 29:1391-9. 2010
    ..The transgenic tobacco lines developed could be useful for phytoremediation of atrazine-contaminated soil and water...
  35. doi Bioavailability of organoclay formulations of atrazine in soil
    Carmen Trigo
    Instituto de Recursos Naturales y Agrobiología de Sevilla IRNAS, CSIC, Avenida Reina Mercedes 10, P O Box 1052, 41080 Sevilla, Spain
    J Agric Food Chem 58:11857-63. 2010
    ....
  36. ncbi [High throughput screening atrazine chlorohydrolase mutants with enhanced activity through Haematococcus pluvialis expression system]
    Huizhuan Wang
    Laboratory of Molecular Genetics, College of Life Sciences, Nankai University, Tianjin 300071, China
    Sheng Wu Gong Cheng Xue Bao 27:620-8. 2011
    ..8-2.6 fold with 2 mg/L atrazine. These results indicated that Haematococcus pluvialis expression system is an ideal high throughput screening system for directed evolution of atrazine chlorohydrolase...
  37. doi Atrazine biodegradation in the lab and in the field: enzymatic activities and gene regulation
    Fernando Govantes
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, and Departamento de Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide, Spain
    Microb Biotechnol 2:178-85. 2009
    ....
  38. doi In vitro evolution of an atrazine-degrading population under cyanuric acid selection pressure: evidence for the selective loss of a 47 kb region on the plasmid ADP1 containing the atzA, B and C genes
    F Changey
    INRA, Universite de Bourgogne, Microbiologie du Sol et de l Environnement, 17 rue Sully, 21065 Dijon Cedex, France
    Gene 490:18-25. 2011
    ....
  39. ncbi Isolation and characterization of atrazine-degrading Arthrobacter sp. AD26 and use of this strain in bioremediation of contaminated soil
    Qingyan Li
    Department of Microbiology, Ministry of Education, Nankai University, Tianjin 300071, China
    J Environ Sci (China) 20:1226-30. 2008
    ....
  40. doi Evaluating a bioremediation tool for atrazine contaminated soils in open soil microcosms: the effectiveness of bioaugmentation and biostimulation approaches
    D Lima
    Institute for Biotechnology and Bioengineering, Centre for Biological and Chemical Engineering, Instituto Superior Tecnico, Av Rovisco Pais, 1049 001 Lisboa, Portugal
    Chemosphere 74:187-92. 2009
    ..We suggest that this bioremediation tool may be valuable for efficient removal of atrazine from contaminated field soils thus minimizing atrazine and its chlorinated derivatives from reaching water compartments...
  41. ncbi Bioaccessibility of environmentally aged 14C-atrazine residues in an agriculturally used soil and its particle-size aggregates
    Nicolai D Jablonowski
    Forschungszentrum Julich GmbH, Institute of Chemistry and Dynamics of the Geosphere, ICG 4 Agrosphere, 52425 Julich, Germany
    Environ Sci Technol 42:5904-10. 2008
    ..7% in soil after 23 days following incubation with Pseudomonas sp. strain ADP. These results show that long-term aged 14C-atrazine residues are still partly accessible to the atrazine degrading microorganism Pseudomonas sp. strain ADP...
  42. ncbi Biological granulated activated carbon fluidized bed reactor for atrazine remediation
    M Herzberg
    Faculty of Civil and Environmental Engineering, Technion, Haifa, Israel
    Water Sci Technol 49:215-22. 2004
    ....
  43. pmc Cloning, characterization, and expression of a gene region from Pseudomonas sp. strain ADP involved in the dechlorination of atrazine
    M L De Souza
    Department of Biochemistry, University of Minnesota, St Paul 55108, USA
    Appl Environ Microbiol 61:3373-8. 1995
    ..strain ADP. A 0.6-kb ApaI-PstI fragment from pMD4, containing the putative atrazine chlorohydrolase gene, hybridized to DNA from atrazine-degrading bacteria isolated in Switzerland and Louisiana.(ABSTRACT TRUNCATED AT 250 WORDS)..
  44. ncbi Microbial aspects of atrazine degradation in natural environments
    T Komang Ralebits
    International Centre for Waste Technology Africa, School of Applied Environmental Sciences, University of Natal, Scottsville, South Africa
    Biodegradation 13:11-9. 2002
    ....
  45. ncbi Biodegradation of atrazine and related s-triazine compounds: from enzymes to field studies
    L P Wackett
    Department of Biochemistry, Molecular Biology and Biophysics and BioTechnology Institute, University of Minnesota, St Paul 55108, USA
    Appl Microbiol Biotechnol 58:39-45. 2002
    ..The method was used for cleaning up a spill of 1,000 pounds of atrazine to attain a level of herbicide acceptable to regulatory agencies...
  46. pmc Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP
    B Martinez
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
    J Bacteriol 183:5684-97. 2001
    ..These results begin to provide insight into how plasmids are structured, and thus evolve, to encode the catabolism of compounds recently added to the biosphere...
  47. pmc Substrate specificity of atrazine chlorohydrolase and atrazine-catabolizing bacteria
    J L Seffernick
    Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, St Paul, Minnesota 55108, USA
    Appl Environ Microbiol 66:4247-52. 2000
    ..strain ADP. This suggests that either (i) another enzyme(s) is present which confers the broader substrate range or (ii) the AtzA itself has a broader substrate range...
  48. pmc Characterization of S-triazine herbicide metabolism by a Nocardioides sp. isolated from agricultural soils
    E Topp
    Agriculture and Agri Food Canada, London, Ontario
    Appl Environ Microbiol 66:3134-41. 2000
    ..In summary, an atrazine-metabolizing Nocardioides sp. widely distributed in agricultural soils degrades a range of s-triazine herbicides by means of a novel s-triazine hydrolase...
  49. pmc AtzC is a new member of the amidohydrolase protein superfamily and is homologous to other atrazine-metabolizing enzymes
    M J Sadowsky
    Department of Microbiology, Institute for Advanced Studies in Biological Process Technology, University of Minnesota, St Paul 55108, USA
    J Bacteriol 180:152-8. 1998
    ..Overall, the data suggest that AtzA, AtzB, and AtzC diverged from a common ancestor and, by random events, have been reconstituted onto an atrazine catabolic plasmid...
  50. ncbi Characterization of Arthrobacter nicotinovorans HIM, an atrazine-degrading bacterium, from agricultural soil New Zealand
    Jackie Aislabie
    Landcare Research, Private Bag 3127, Hamilton 2010, New Zealand
    FEMS Microbiol Ecol 52:279-86. 2005
    ..nicotinovorans HIM. Cloning of the atzABC genes revealed significant homology (>99%) with the atrazine degradation genes of Pseudomonas sp. strain ADP. The atrazine degradation genes were held on a 96 kbp plasmid...
  51. ncbi Characterisation of new strains of atrazine-degrading Nocardioides sp. isolated from Japanese riverbed sediment using naturally derived river ecosystem
    Koji Satsuma
    Chemistry Division, The Institute of Environmental Toxicology, 303 0043 Ibaraki, Japan
    Pest Manag Sci 62:340-9. 2006
    ..atrazine chlorohydrolase from Nocardioides C190) and atzC (N-isopropylammelide isopropyl amidohydrolase from Pseudomonas ADP)...
  52. pmc Purification and characterization of TrzF: biuret hydrolysis by allophanate hydrolase supports growth
    Nir Shapir
    Department of Biochemistry, Molecular Biology and Biophysics, 140 Gortner Lab, 1479 Gortner Ave, University of Minnesota, St Paul, MN 55108, USA
    Appl Environ Microbiol 72:2491-5. 2006
    ..The biuret hydrolyzing activity of TrzF might also be physiologically relevant in native strains. E. cloacae strain 99 grows on cyanuric acid with a significant accumulation of biuret...
  53. doi Isolation and characterization of a novel simazine-degrading bacterium from agricultural soil of central Chile, Pseudomonas sp. MHP41
    Marcela Hernandez
    Laboratorio de Microbiología Molecular y Biotecnología Ambiental, Millennium Nucleus of Microbial Ecology and Environmental Microbiology and Biotechnology EMBA, Departamento de Quimica, Universidad Tecnica Federico Santa Maria, Valparaiso, Chile
    FEMS Microbiol Lett 286:184-90. 2008
    ..This is the first s-triazine-degrading bacterium isolated in South America. Strain MHP41 is a potential biocatalyst for the remediation of s-triazine-contaminated environments...
  54. doi Availability of triazine herbicides in aged soils amended with olive oil mill waste
    Alegria Cabrera
    Instituto de Recursos Naturales y Agrobiologia de Sevilla INRAS CSIC, Sevilla, Spain
    J Agric Food Chem 56:4112-9. 2008
    ..In summary, addition of alperujo to the soils studied was shown to increase triazine herbicides sorption and hence to reduce its availability and potential to leach...
  55. doi Determining design and scale-up parameters for degradation of atrazine with suspended Pseudomonas sp. ADP in aqueous bioreactors
    Nicole Biglione
    The Department of Chemical and Biochemical Engineering and Center for Biocatalysis and Bioprocessing, The University of Iowa, Iowa City, Iowa 52242, USA
    Biotechnol Prog 24:588-92. 2008
    ..Error analysis on calculated values of Ks were found to impact estimates in atrazine concentration by as much as two orders of magnitude, depending on the reactor design, illustrating the importance of these factors in reactor scale-up...
  56. doi Fitness drift of an atrazine-degrading population under atrazine selection pressure
    Marion Devers
    INRA, Universite de Bourgogne, UMR1229 Microbiologie du Sol et de l Environnement, CMSE, 17 rue Sully, BP 86510, F 21065 Dijon, France
    Environ Microbiol 10:676-84. 2008
    ....
  57. ncbi The LysR-type regulator AtzR binding site: DNA sequences involved in activation, repression and cyanuric acid-dependent repositioning
    Odil Porrúa
    Centro Andaluz de Biologia del Desarrollo, Universidad Pablo de Olavide CSIC, and Departamento de Biología Molecular e Ingeniería Bioquímica, Universidad Pablo de Olavide
    Mol Microbiol 66:410-27. 2007
    ..Deletion of the ABS only provokes a modest decrease in AtzR affinity for the promoter region in vitro, but abolishes repression of PatzR in vivo. Involvement of the ABS in autorepression has not been previously reported...
  58. pmc Hydroxyatrazine N-ethylaminohydrolase (AtzB): an amidohydrolase superfamily enzyme catalyzing deamination and dechlorination
    Jennifer L Seffernick
    Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, 140 Gortner Lab, 1479 Gortner Ave, St Paul, MN 55108, USA
    J Bacteriol 189:6989-97. 2007
    ..This differs from AtzA and TrzN, which do not catalyze deamination reactions, and AtzC, which is not known to catalyze dechlorination reactions...
  59. ncbi Isolation and characterization of a novel simazine-degrading beta-proteobacterium and detection of genes encoding s-triazine-degrading enzymes
    Akio Iwasaki
    Kowa Research Institute, Kowa Co, Ltd, 1 25 5 Kannondai, Tsukuba, Ibaraki 305 0856, Japan
    Pest Manag Sci 63:261-8. 2007
    ..strain ADP, and the 1526-nucleotide downstream fragment showed 99.8% sequence similarity to the atzB gene of the pseudomonad...
  60. pmc Purification and characterization of allophanate hydrolase (AtzF) from Pseudomonas sp. strain ADP
    Nir Shapir
    Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 1479 Gortner Avenue, St Paul, Minnesota 55108, USA
    J Bacteriol 187:3731-8. 2005
    ..Thus, AtzF affects the cleavage of three carbon-to-nitrogen bonds via a mechanism similar to that of enzymes catalyzing single-amide-bond cleavage reactions. AtzF orthologs appear to be widespread among bacteria...
  61. pmc The atzB gene of Pseudomonas sp. strain ADP encodes the second enzyme of a novel atrazine degradation pathway
    K L Boundy-Mills
    Department of Soil, Water, and Climate, University of Minnesota, St Paul 55108, USA
    Appl Environ Microbiol 63:916-23. 1997
    ..The atzA and atzB genes catalyze the first two steps of the metabolic pathway in a bacterium that rapidly metabolizes atrazine to carbon dioxide, ammonia, and chloride...