Pseudomonas putida

Summary

Alias: Pseudomonas sp. TC29-1, Pseudomonas putida HK5, Pseudomonas arvilla C-1, "Bacillus putidus" Trevisan 1889, Pseudomonas striata, Pseudomonas rugosa, Pseudomonas putida (Trevisan 1889) Migula 1895, Pseudomonas ovalis, Pseudomonas incognita, Pseudomonas eisenbergii, Pseudomonas convexa, Pseudomonas arvilla, Bacillus putidus, "Bacillus fluorescens putidus" Flugge 1886, "Pseudomonas convexa" Chester 1901, "Pseudomonas eisenbergii" Migula 1900, "Pseudomonas incognita" Chester 1901, "Pseudomonas ovalis" Chester 1901, "Pseudomonas rugosa" (Wright 1895) Chester 1901, "Pseudomonas striata" Chester 1901, Arthrobacter siderocapsulatus, Arthrobacter siderocapsulatus Dubinin (sic) and Zhdanov 1975, Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 (Approved Lists 1980), Bacillus fluorescens putidus, Pseudomonas sp. CT363, Pseudomonas sp. KDB25, Pseudomonas sp. KDS 6, Pseudomanas putida, bacterium ASFP-1, bacterium MASFP-4

Top Publications

  1. Di Ianni F, Dodi P, Cabassi C, Pelizzone I, Sala A, Cavirani S, et al. Conjunctival flora of clinically normal and diseased turtles and tortoises. BMC Vet Res. 2015;11:91 pubmed publisher
    ..b>Pseudomonas putida, Salmonella enterica ssp. arizonae, Stenotrophomonas maltophilia and Vibrio parahaemolyticus was evidenced...
  2. Mohammed M, Alnour T, Shakurfo O, Aburass M. Prevalence and antimicrobial resistance pattern of bacterial strains isolated from patients with urinary tract infection in Messalata Central Hospital, Libya. Asian Pac J Trop Med. 2016;9:771-6 pubmed publisher
    ..each), and Aeromonas caviae, Citrobacter freundii, Cronobacter sakazakii, Enterobacter amnigenus biogroup 2, Pseudomonas putida and Serratia marcescens (0.6%, each)...
  3. Hoque F, Jawahar Abraham T, Nagesh T, Kamilya D. Pseudomonas aeruginosa FARP72 Offers Protection Against Aeromonas hydrophila Infection in Labeo rohita. Probiotics Antimicrob Proteins. 2018;: pubmed publisher
    ..It showed inhibitory activity against Aeromonas caviae, A. hydrophila, Edwardsiella tarda, Pseudomonas putida, and Streptococcus agalactiae as revealed by cross and parallel streaking methods...
  4. Rahimzadeh S, Pirzad A. Arbuscular mycorrhizal fungi and Pseudomonas in reduce drought stress damage in flax (Linum usitatissimum L.): a field study. Mycorrhiza. 2017;27:537-552 pubmed publisher
    ..AM) fungi (Funneliformis mosseae or Rhizophagus intraradices) and a phosphate solubilizing bacterium (Pseudomonas putida P13; PSB) was evaluated under different irrigation regimes (irrigation after 60, 120, and 180 mm of ..
  5. Iyer R, Iken B, Damania A, Krieger J. Whole genome analysis of six organophosphate-degrading rhizobacteria reveals putative agrochemical degradation enzymes with broad substrate specificity. Environ Sci Pollut Res Int. 2018;25:13660-13675 pubmed publisher
    ..from farm and ranch soil rhizospheres across the Houston-metropolitan area were identified as strains of Pseudomonas putida (CBF10-2), Pseudomonas stutzeri (ODKF13), Ochrobactrum anthropi (FRAF13), Stenotrophomonas maltophilia (..
  6. Santos I, Chaumette A, Smuts J, Hildenbrand Z, Schug K. Analysis of bacteria stress responses to contaminants derived from shale energy extraction. Environ Sci Process Impacts. 2019;21:269-278 pubmed publisher
    ..fatty acid and protein compositions of Escherichia coli, Klebsiella oxytoca, Pseudomonas aeruginosa, Pseudomonas putida, Pseudomonas stutzeri, Aeromonas hydrophila, Bacillus cereus, and Bacillus subtilis...
  7. Liu H, Zhang L, Yi H, Han X, Gao W, Chi C, et al. A novel enterocin T1 with anti-Pseudomonas activity produced by Enterococcus faecium T1 from Chinese Tibet cheese. World J Microbiol Biotechnol. 2016;32:21 pubmed publisher
    ..T1 was observed to inhibit the growth of numerous Gram-negative and Gram-positive bacteria including Pseudomonas putida, Pseudomonas aeruginosa, Pseudomonas fluorescens, Escherichia coli, Salmonella typhimurium, Shigella ..
  8. Maes M, Kanchanatawan B, Sirivichayakul S, Carvalho A. In Schizophrenia, Increased Plasma IgM/IgA Responses to Gut Commensal Bacteria Are Associated with Negative Symptoms, Neurocognitive Impairments, and the Deficit Phenotype. Neurotox Res. 2019;35:684-698 pubmed publisher
    ..The presence of deficit schizophrenia was highly predicted by increased IgA responses to Pseudomonas putida and IgM responses to all five Gram-negative bacteria and lowered natural IgM to MDA and azelaic acid with a ..
  9. Zhao Q, Hu H, Wang W, Huang X, Zhang X. Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58. Appl Environ Microbiol. 2017;83: pubmed publisher
    ..The dioxygenase-, ferredoxin-, and reductase-encoding genes were expressed in Pseudomonas putida KT2440 or E. coli BL21, and the three recombinant proteins were purified...

More Information

Publications258 found, 100 shown here

  1. Nagayama H, Sugawara T, Endo R, Ono A, Kato H, Ohtsubo Y, et al. Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts. Appl Microbiol Biotechnol. 2015;99:4453-70 pubmed publisher
    ..The resultant library was introduced into naphthalene-degrading Pseudomonas putida-derived strains having deficiencies in their naphthalene dioxygenase components, and indigo-forming clones ..
  2. Yoshida K, Sano H, Seki S, Oda M, Fujimura M, Fujita Y. Cloning and sequencing of a 29 kb region of the Bacillus subtilis genome containing the hut and wapA loci. Microbiology. 1995;141 ( Pt 2):337-43 pubmed
    ..complete ORFs revealed that nine of them exhibit significant homology to known proteins such as urocanase (Pseudomonas putida), a protein involved in clavulanic acid biosynthesis (Streptomyces griseus), amino acid permeases (lysine, ..
  3. Iyer R, Smith K, Kudrle B, León A. Detection and location of OP-degrading activity: A model to integrate education and research. N Biotechnol. 2015;32:403-11 pubmed publisher
    ..Collected strains exhibit phosphotriesterase-like enzymatic activity with isolates of Pseudomonas putida and Stenotrophomonas maltophilia capable of degrading both the phosphotriester paraoxon and the ..
  4. Gutiérrez S, Martínez Blanco H, Rodríguez Aparicio L, Ferrero M. Effect of fermented broth from lactic acid bacteria on pathogenic bacteria proliferation. J Dairy Sci. 2016;99:2654-2665 pubmed publisher
    ..the 2 Pseudomonas, we observed a slight adhesion inhibition showed by Lactobacillus rhamnosus broth against Pseudomonas putida. These results confirm that the effect caused by the different LAB assayed is also broth- and species-..
  5. Heinrich D, Raberg M, Fricke P, Kenny S, Morales Gamez L, Babu R, et al. Synthesis Gas (Syngas)-Derived Medium-Chain-Length Polyhydroxyalkanoate Synthesis in Engineered Rhodospirillum rubrum. Appl Environ Microbiol. 2016;82:6132-6140 pubmed
    ..For this, genes from Pseudomonas putida KT2440 coding for a 3-hydroxyacyl acyl carrier protein (ACP) thioesterase (phaG), a medium-chain-length (MCL)..
  6. Hoffman R, Miki K, Al Refaie W, Xu M, Tan Y. Methioninase Gene Therapy. Methods Mol Biol. 2019;1866:173-197 pubmed publisher
    Recombinant methioninase (rMETase) derived from Pseudomonas putida targets the elevated methionine (MET) requirement of cancer cells (methionine dependence) and has shown efficacy against a variety of cancer types in mouse models...
  7. Bao Y, Wang J, Li C, Li P, Wang S, Lin Z. A preliminary study on the antibacterial mechanism of Tegillarca granosa hemoglobin by derived peptides and peroxidase activity. Fish Shellfish Immunol. 2016;51:9-16 pubmed publisher
    ..Purified Tg-HbI and Tg-HbII showed antibacterial activity against Escherichia coli, Pseudomonas putida, Bacillus subtilis, and Bacillus firmus, with differences in minimal inhibitory concentrations (MICs), but ..
  8. Angeletti S, Ceccarelli G, Vita S, Dicuonzo G, Lopalco M, Dedej E, et al. Unusual microorganisms and antimicrobial resistances in a group of Syrian migrants: Sentinel surveillance data from an asylum seekers centre in Italy. Travel Med Infect Dis. 2016;14:115-22 pubmed publisher
    ..In swabs a large number of unusual gram-negative bacteria species were isolated, such as Pseudomonas putida, Pseudomonas monteilii, Pseudomonas fulva, Pseudomonas moselii, Aeromonas veronii, Aeromonas caviae, ..
  9. Li G, Lu C. The Cryptic dsdA Gene Encodes a Functional D-Serine Dehydratase in Pseudomonas aeruginosa PAO1. Curr Microbiol. 2016;72:788-94 pubmed publisher
    ..aeruginosa, and that most strains of Pseudomonas putida possess putative dsdCAX genes encoding a transcriptional regulator DsdC and a D-serine transporter DsdX as ..
  10. Roomruangwong C, Kanchanatawan B, Sirivichayakul S, Anderson G, Carvalho A, Duleu S, et al. IgM-mediated autoimmune responses to oxidative specific epitopes, but not nitrosylated adducts, are significantly decreased in pregnancy: association with bacterial translocation, perinatal and lifetime major depression and the tryptophan catabolite . Metab Brain Dis. 2017;32:1571-1583 pubmed publisher
    ..protein (CRP) were inversely associated with TRYCAT pathway activity, whilst a lifetime depression and Pseudomonas putida were positively associated...
  11. Dmowski M, Gołebiewski M, Kern Zdanowicz I. Characteristics of the Conjugative Transfer System of the IncM Plasmid pCTX-M3 and Identification of Its Putative Regulators. J Bacteriol. 2018;200: pubmed publisher
    ..is unable to support replication in Agrobacterium tumefaciens, Ralstonia eutropha, and Pseudomonas putida, though its conjugation system is capable of introducing plasmids bearing oriTpCTX-M3 ..
  12. Kumar A, Singh R, Yadav A, Giri D, Singh P, Pandey K. Isolation and characterization of bacterial endophytes of Curcuma longa L. 3 Biotech. 2016;6:60 pubmed publisher
    ..ECL3), Bacillus pumilis (ECL4), Pseudomonas putida (ECL5), and Clavibacter michiganensis (ECL6)...
  13. Yu T, Jiang X, Liang Y, Zhu Y, Tian J, Ying H, et al. Characterization and Horizontal Transfer of Antimicrobial Resistance Genes and Integrons in Bacteria Isolated from Cooked Meat Products in China. J Food Prot. 2017;:2048-2055 pubmed publisher
    ..One isolate of Pseudomonas putida carried qnrB, and sequence analysis of the PCR product revealed 96% identity to qnrB2...
  14. Albu M, Vladkova T, Ivanova I, Shalaby A, Moskova Doumanova V, Staneva A, et al. Preparation and Biological Activity of New Collagen Composites, Part I: Collagen/Zinc Titanate Nanocomposites. Appl Biochem Biotechnol. 2016;180:177-93 pubmed publisher
    ..Bacillus cereus, and Candida lusitaniae) and Gracilicutes (Escherichia coli, Salmonella enterica, and Pseudomonas putida) microorganisms...
  15. Shin J, Park S, Oh Y, Choi J, Lee M, Cho J, et al. Metabolic engineering of Corynebacterium glutamicum for enhanced production of 5-aminovaleric acid. Microb Cell Fact. 2016;15:174 pubmed
    ..vectors containing different promoters and origins of replication were examined for optimal expression of Pseudomonas putida davB and davA genes encoding lysine 2-monooxygenase and delta-aminovaleramidase, respectively...
  16. Kim J, Park W. Genome analysis of the naphthalene-degrading Pseudomonas sp. AS1 harboring the megaplasmid pAS1. J Microbiol Biotechnol. 2017;: pubmed publisher
    ..extremely high similarity in size and sequences to the well-known naphthalene-degrading plasmid pDTG1 in Pseudomonas putida strain NCIB 9816-4...
  17. Lee J, Wendisch V. Biotechnological production of aromatic compounds of the extended shikimate pathway from renewable biomass. J Biotechnol. 2017;257:211-221 pubmed publisher
    ..biotechnological production of aromatic and related compounds from renewable biomass by Escherichia coli, Pseudomonas putida, C. glutamicum and Saccharomyces cerevisiae...
  18. Reda R, Selim K, El Sayed H, El Hady M. In Vitro Selection and Identification of Potential Probiotics Isolated from the Gastrointestinal Tract of Nile Tilapia, Oreochromis niloticus. Probiotics Antimicrob Proteins. 2018;10:692-703 pubmed publisher
    ..from the five isolated fish pathogens, Aeromonas sobria, Aeromonas hydrophila, Pseudomonas aeruginosa, Pseudomonas putida, and Staphylococcus aureus...
  19. Federico B, Pinto L, Quintieri L, Carito A, Calabrese N, Caputo L. Efficacy of lactoferricin B in controlling ready-to-eat vegetable spoilage caused by Pseudomonas spp. Int J Food Microbiol. 2015;215:179-86 pubmed publisher
    ..Aeromonas media, Pseudomonas cichorii, Pseudomonas fluorescens, Pseudomonas jessenii, Pseudomonas koreensis, Pseudomonas putida, Pseudomonas simiae and Pseudomonas viridiflava species...
  20. Fagerlund A, Møretrø T, Heir E, Briandet R, Langsrud S. Cleaning and Disinfection of Biofilms Composed of Listeria monocytogenes and Background Microbiota from Meat Processing Surfaces. Appl Environ Microbiol. 2017;83: pubmed publisher
    ..i>Acinetobacter and Pseudomonas mandelii diminished, and biofilms were instead dominated by Pseudomonas putida (65 to 76%), Pseudomonas fluorescens (11 to 15%) and L. monocytogenes (3 to 11%)...
  21. Nascimento S, Lima A, Borges B, De Souza C. Endophytic bacteria from Piper tuberculatum Jacq.: isolation, molecular characterization, and in vitro screening for the control of Fusarium solani f. sp piperis, the causal agent of root rot disease in black pepper (Piper nigrum L.). Genet Mol Res. 2015;14:7567-77 pubmed publisher
    ..Antagonistic assays revealed that Pt12 and Pt13 isolates, identified as Pseudomonas putida and Pseudomonas sp, respectively, were able to inhibit F. solani f. sp piperis growth in vitro...
  22. Fu J, Sharma P, Spicer V, Krokhin O, Zhang X, Fristensky B, et al. Effects of impurities in biodiesel-derived glycerol on growth and expression of heavy metal ion homeostasis genes and gene products in Pseudomonas putida LS46. Appl Microbiol Biotechnol. 2015;99:5583-92 pubmed publisher
    ..investigated as potential carbon source for medium chain length polyhydroxyalkanoate (mcl-PHA) production by Pseudomonas putida LS46. In this study, we evaluated the effect of impurities in the WG on P...
  23. Ortiz de Orué Lucana D, Bogel G, Zou P, Groves M. The oligomeric assembly of the novel haem-degrading protein HbpS is essential for interaction with its cognate two-component sensor kinase. J Mol Biol. 2009;386:1108-22 pubmed
    ..including Vibrio cholerae, Klebsiella pneumoniae, Corynebacterium diphtheriae, Arthrobacter aurescens and Pseudomonas putida), suggesting the existence of a previously undescribed bacterial oxidative stress-response pathway common to ..
  24. Lamba M, Ahammad S. Sewage treatment effluents in Delhi: A key contributor of ?-lactam resistant bacteria and genes to the environment. Chemosphere. 2017;188:249-256 pubmed publisher
    ..indicated the presence of clinically significant drug-resistant pathogens such as Escherichia coli, Pseudomonas putida, Pseudomonas aeruginosa, Enterobacter cloacae, Klebsiella pneumoniae, Klebsiella oxytoca, Acinetobacter ..
  25. García Hidalgo J, Ravi K, Kuré L, Liden G, Gorwa Grauslund M. Identification of the two-component guaiacol demethylase system from Rhodococcus rhodochrous and expression in Pseudomonas putida EM42 for guaiacol assimilation. AMB Express. 2019;9:34 pubmed publisher
    ..demethylation system in an inducible expression plasmid that was introduced into the Gram negative host Pseudomonas putida EM42, and the guaiacol consumption dynamics of each resulting strain were analyzed...
  26. Abdul Mutalib N, Amin Nordin S, Osman M, Ishida N, Tashiro K, Sakai K, et al. Pyrosequencing analysis of microbial community and food-borne bacteria on restaurant cutting boards collected in Seri Kembangan, Malaysia, and their correlation with grades of food premises. Int J Food Microbiol. 2015;200:57-65 pubmed publisher
    ..Enterobacter aerogenes, Pseudomonas sp. and Pseudomonas putida. Several OTUs were identified most closely related to known food-borne pathogens, including Bacillus cereus, ..
  27. Zhang J, Tang X, Zhang M, Nguyen D, Moore B. Broad-Host-Range Expression Reveals Native and Host Regulatory Elements That Influence Heterologous Antibiotic Production in Gram-Negative Bacteria. MBio. 2017;8: pubmed publisher
    ..i>Pseudoalteromonas luteoviolacea 2ta16 revealed robust production in two proteobacterial hosts, Pseudomonas putida KT2440 and Agrobacterium tumefaciens LBA4404, but very little production of the antibiotic in ..
  28. Ortiz N, Armada E, Duque E, Roldán A, Azcón R. Contribution of arbuscular mycorrhizal fungi and/or bacteria to enhancing plant drought tolerance under natural soil conditions: effectiveness of autochthonous or allochthonous strains. J Plant Physiol. 2015;174:87-96 pubmed publisher
    ..thuringiensis (Bt)] were assayed and compared to Rhizophagus intraradices (Ri), Bacillus megaterium (Bm) or Pseudomonas putida (Psp) and non-inoculation on Trifolium repens in a natural arid soil under drought conditions...
  29. Hsieh S, Wang J, Lai Y, Su C, Lee K. Production of 1-Dodecanol, 1-Tetradecanol, and 1,12-Dodecanediol through Whole-Cell Biotransformation in Escherichia coli. Appl Environ Microbiol. 2018;84: pubmed publisher
    ..accessibility of medium- and long-chain alkanes, we coexpressed a tunable alkane facilitator (AlkL) from Pseudomonas putida GPo1. Using a recombinant Escherichia coli strain, we produced 1...
  30. Jatsenko T, Sidorenko J, Saumaa S, Kivisaar M. DNA Polymerases ImuC and DinB Are Involved in DNA Alkylation Damage Tolerance in Pseudomonas aeruginosa and Pseudomonas putida. PLoS ONE. 2017;12:e0170719 pubmed publisher
  31. Guragain M, Jennings Gee J, Cattelan N, Finger M, Conover M, Hollis T, et al. The Transcriptional Regulator BpsR Controls the Growth of Bordetella bronchiseptica by Repressing Genes Involved in Nicotinic Acid Degradation. J Bacteriol. 2018;200: pubmed publisher
    ..These Gram-negative bacteria also harbor a gene cluster homologous to the nic cluster of Pseudomonas putida which is involved in the aerobic degradation of NA and its transcriptional control...
  32. Grimm A, Harwood C. NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J Bacteriol. 1999;181:3310-6 pubmed
    b>Pseudomonas putida G7 exhibits chemotaxis to naphthalene, but the molecular basis for this was not known...
  33. Tan G, Chen C, Ge L, Li L, Tan S, Wang J. Bioconversion of styrene to poly(hydroxyalkanoate) (PHA) by the new bacterial strain Pseudomonas putida NBUS12. Microbes Environ. 2015;30:76-85 pubmed publisher
    ..05±0.00 and 23.10±3.25% cell dry mass (% CDM). The best-performing isolate was identified as Pseudomonas putida NBUS12. A genetic analysis of 16S rDNA and phaZ genes revealed P...
  34. Svenningsen N, Pérez Pantoja D, Nikel P, Nicolaisen M, de Lorenzo V, Nybroe O. Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response. BMC Microbiol. 2015;15:202 pubmed publisher
    ..the rise of intracellular ROS caused by matric stress for the toluene- and xylene-degrading soil bacterium Pseudomonas putida mt-2. For the current experiments, controlled matric potential stress was delivered to P...
  35. Neidle E, Hartnett C, Ornston L, Bairoch A, Rekik M, Harayama S. cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily. Eur J Biochem. 1992;204:113-20 pubmed
    ..The structural gene for this dehydrogenase, encoded on TOL plasmid pWW0 of Pseudomonas putida (xylL) and that encoded on the chromosome of Acinetobacter calcoaceticus (benD), were sequenced...
  36. Lieder S, Jahn M, Koepff J, Müller S, Takors R. Environmental stress speeds up DNA replication in Pseudomonas putida in chemostat cultivations. Biotechnol J. 2016;11:155-63 pubmed publisher
    ..Applying continuous steady state cultivations (chemostats), the DNA content of a Pseudomonas putida KT2440 population was quantified with flow cytometry at distinct growth rates...
  37. Martín Mora D, Reyes Darias J, Ortega Ã, Corral Lugo A, Matilla M, Krell T. McpQ is a specific citrate chemoreceptor that responds preferentially to citrate/metal ion complexes. Environ Microbiol. 2016;18:3284-3295 pubmed publisher
    Chemoreceptors are at the beginning of chemosensory pathways that mediate chemotaxis. Pseudomonas putida KT2440 is predicted to have 27 chemoreceptors, most of which uncharacterized...
  38. Chao H, Chen Y, Fang T, Xu Y, Huang W, Zhou N. HipH Catalyzes the Hydroxylation of 4-Hydroxyisophthalate to Protocatechuate in 2,4-Xylenol Catabolism by Pseudomonas putida NCIMB 9866. Appl Environ Microbiol. 2016;82:724-31 pubmed publisher
    In addition to growing on p-cresol, Pseudomonas putida NCIMB 9866 is the only reported strain capable of aerobically growing on 2,4-xylenol, which is listed as a priority pollutant by the U.S. Environmental Protection Agency...
  39. Attia M, Ali A, Essam T, Amin M. Direct Detection of Burkholderia cepacia in Susceptible Pharmaceutical Products Using Semi-Nested PCR. PDA J Pharm Sci Technol. 2016;70:99-108 pubmed publisher
    ..6017,Bacillus subtilisATCC® 6633,Micrococcus luteus, Staphylococcus warneri, Pseudomonas fluorescens, Pseudomonas putida, andRalstonia pickettii Moreover, this semi-nested assay showed a detection limit of around 10 colony-..
  40. Hyldgaard M, Meyer R, Peng M, Hibberd A, Fischer J, Sigmundsson A, et al. Binary combination of epsilon-poly-L-lysine and isoeugenol affect progression of spoilage microbiota in fresh turkey meat, and delay onset of spoilage in Pseudomonas putida challenged meat. Int J Food Microbiol. 2015;215:131-42 pubmed publisher
    ..efficiency of different ratios of the two antimicrobial agents was further evaluated in vitro against Pseudomonas putida. Subsequently, the most efficient ratio was applied to a raw turkey meat model system which was incubated ..
  41. Currie F, Broadhurst D, Dunn W, Sellick C, Goodacre R. Metabolomics reveals the physiological response of Pseudomonas putida KT2440 (UWC1) after pharmaceutical exposure. Mol Biosyst. 2016;12:1367-77 pubmed publisher
    ..In this study we attempt to measure the effects of exposing cultures of Pseudomonas putida KT2440 (UWC1) to six pharmaceuticals by looking at differences in metabolite levels...
  42. Niu Z, Jia Y, Chen Y, Hu Y, Chen J, Lv Y. Positive effects of bio-nano Pd (0) toward direct electron transfer in Pseudomona putida and phenol biodegradation. Ecotoxicol Environ Saf. 2018;161:356-363 pubmed publisher
    This study constructed a biological-inorganic hybrid system including Pseudomonas putida (P...
  43. Tobajas M, Verdugo V, Polo A, Rodriguez J, Mohedano A. Assessment of toxicity and biodegradability on activated sludge of priority and emerging pollutants. Environ Technol. 2016;37:713-21 pubmed publisher
    ..bioassays using representative bacteria of marine and terrestrial ecosystems such as Vibrio fischeri and Pseudomonas putida have been used to assess the ecotoxicity...
  44. Hiroe A, Watanabe S, Kobayashi M, Nomura C, Tsuge T. Increased synthesis of poly(3-hydroxydodecanoate) by random mutagenesis of polyhydroxyalkanoate synthase. Appl Microbiol Biotechnol. 2018;102:7927-7934 pubmed publisher
    ..of P(3HDD), PHA synthase was modified through random mutagenesis of a region of the PHA synthase 1 gene from Pseudomonas putida KT2440 (phaC1Pp)...
  45. Spooner R, Lindsay K, Franklin F. Genetic, functional and sequence analysis of the xylR and xylS regulatory genes of the TOL plasmid pWW0. J Gen Microbiol. 1986;132:1347-58 pubmed
    ..The ORF designated xylS appears capable of encoding a polypeptide of approximately 37 kDa. ..
  46. Yu F, Fu R, Xie Y, Chen W. Isolation and characterization of polyacrylamide-degrading bacteria from dewatered sludge. Int J Environ Res Public Health. 2015;12:4214-30 pubmed publisher
    ..This strain could metabolize PAM as its sole nutrient source and was subsequently identified as Pseudomonas putida. The efficiency of PAM degradation was 31...
  47. Sajna K, Sukumaran R, Gottumukkala L, Pandey A. Crude oil biodegradation aided by biosurfactants from Pseudozyma sp. NII 08165 or its culture broth. Bioresour Technol. 2015;191:133-9 pubmed publisher
    ..NII 08165 for enhancing the degradation of crude oil by a model hydrocarbon degrading strain, Pseudomonas putida MTCC 1194. Pseudozyma biosurfactants were supplemented at various concentrations to the P...
  48. Ocampo Sosa A, Guzmán Gómez L, Fernández Martínez M, Román E, Rodríguez C, Marco F, et al. Isolation of VIM-2-producing Pseudomonas monteilii clinical strains disseminated in a tertiary hospital in northern Spain. Antimicrob Agents Chemother. 2015;59:1334-6 pubmed publisher
    ..show the emergence of VIM-2-producing multidrug-resistant species other than Pseudomonas aeruginosa or Pseudomonas putida in a Spanish hospital. P...
  49. Cigna J, Raoul Des Essarts Y, Mondy S, Hélias V, Beury Cirou A, Faure D. Draft Genome Sequences of Pseudomonas fluorescens Strains PA4C2 and PA3G8 and Pseudomonas putida PA14H7, Three Biocontrol Bacteria against Dickeya Phytopathogens. Genome Announc. 2015;3: pubmed publisher
    Pseudomonas fluorescens strains PA4C2 and PA3G8 and Pseudomonas putida strain PA14H7 were isolated from potato rhizosphere and show an ability to inhibit the growth of Dickeya phytopathogens...
  50. Hanko E, Minton N, Malys N. Characterisation of a 3-hydroxypropionic acid-inducible system from Pseudomonas putida for orthogonal gene expression control in Escherichia coli and Cupriavidus necator. Sci Rep. 2017;7:1724 pubmed publisher
    ..and characterise 3-HP-inducible promoters and their corresponding LysR-type transcriptional regulators from Pseudomonas putida KT2440...
  51. Sánchez Pascuala A, Nikel P, De Lorenzo V. Re-Factoring Glycolytic Genes for Targeted Engineering of Catabolism in Gram-Negative Bacteria. Methods Mol Biol. 2018;1772:3-24 pubmed publisher
    ..The potential of the GlucoBrick platform is further illustrated by engineering novel glycolytic activities in the most representative members of the Pseudomonas genus (Pseudomonas putida and Pseudomonas aeruginosa).
  52. Kaczmarczyk A, Vorholt J, Francez Charlot A. Synthetic vanillate-regulated promoter for graded gene expression in Sphingomonas. Sci Rep. 2014;4:6453 pubmed publisher
    ..engineered by combining a synthetic minimal promoter, P(syn2), and operator sites and the repressor of the Pseudomonas putida F1 cym/cmt system...
  53. Dong W, Chen Q, Hou Y, Li S, Zhuang K, Huang F, et al. Metabolic pathway involved in 2-methyl-6-ethylaniline degradation by Sphingobium sp. strain MEA3-1 and cloning of the novel flavin-dependent monooxygenase system meaBA. Appl Environ Microbiol. 2015;81:8254-64 pubmed publisher
    ..Complementation with meaBA in MEA3-1Mut and heterologous expression in Pseudomonas putida strain KT2440 resulted in the production of an active MEHQ monooxygenase.
  54. Sun F, Zhou D, Wang Q, Feng J, Feng W, Luo W, et al. Genetic characterization of a novel blaDIM-2-carrying megaplasmid p12969-DIM from clinical Pseudomonas putida. J Antimicrob Chemother. 2016;71:909-12 pubmed publisher
    To characterize a blaDIM-2-carrying 409 kb megaplasmid p12969-DIM of Pseudomonas putida 12969 from a patient with pneumonia in China...
  55. Gilani R, Rafique M, Rehman A, Munis M, Rehman S, Chaudhary H. Biodegradation of chlorpyrifos by bacterial genus Pseudomonas. J Basic Microbiol. 2016;56:105-19 pubmed publisher
    ..b>Pseudomonas putida MAS-1 is reported to be more efficient in chlorpyrifos degradation by a rate of 90% in 24 h among ..
  56. López Farfán D, Reyes Darias J, Krell T. The expression of many chemoreceptor genes depends on the cognate chemoeffector as well as on the growth medium and phase. Curr Genet. 2017;63:457-470 pubmed publisher
    ..Recent genome analyses have shown that many bacteria have a much higher number of chemoreceptors. Pseudomonas putida KT2440 is an alternative model that has 27 chemoreceptors and the cognate chemoeffector is known for many of ..
  57. Thuptimdang P, Limpiyakorn T, Khan E. Dependence of toxicity of silver nanoparticles on Pseudomonas putida biofilm structure. Chemosphere. 2017;188:199-207 pubmed publisher
    ..Biofilms of Pseudomonas putida KT2440 were formed in batch conditions under different carbon sources (glucose, glutamic acid, and citrate), ..
  58. Mirazimi S, Abbasalipour Z, Rashchi F. Vanadium removal from LD converter slag using bacteria and fungi. J Environ Manage. 2015;153:144-51 pubmed publisher
    ..means of three different species of microbial systems: Acidithiobacillus thiooxidans (autotrophic bacteria), Pseudomonas putida (heterotrophic bacteria) and Aspergillus niger (fungi)...
  59. Colauto N, Fermor T, Eira A, Linde G. Pseudomonas putida Stimulates Primordia on Agaricus bitorquis. Curr Microbiol. 2016;72:482-8 pubmed publisher
    ..bisporus cultivation and among those 12% are Pseudomonas putida. Four biochemical assays were used to identify P. putida. In vitro primordium stimulation of living P...
  60. Equar M, Tani Y, Mihara H. Purification and Properties of Glycine Oxidase from Pseudomonas putida KT2440. J Nutr Sci Vitaminol (Tokyo). 2015;61:506-10 pubmed publisher
    ..We have purified and characterized ThiO from Pseudomonas putida KT2440...
  61. Sohbatzadeh H, Keshtkar A, Safdari J, Fatemi F. U(VI) biosorption by bi-functionalized Pseudomonas putida @ chitosan bead: Modeling and optimization using RSM. Int J Biol Macromol. 2016;89:647-58 pubmed publisher
    In this work, Pseudomonas putida cells immobilized into chitosan beads (PICB) were synthesized to investigate the impact of microorganism entrapment on biosorption capacity of prepared biosorbent for U(VI) biosorption from aqueous ..
  62. Inouye S, Nakazawa A, Nakazawa T. Nucleotide sequence of the regulatory gene xylS on the Pseudomonas putida TOL plasmid and identification of the protein product. Gene. 1986;44:235-42 pubmed
    ..controls expression of the genes on the TOL plasmid for degradation enzymes of benzoate or m-toluate in Pseudomonas putida. Cloning of the gene in Escherichia coli and determination of the nucleotide sequence revealed an open ..
  63. Viggiani A, Siani L, Notomista E, Birolo L, Pucci P, Di Donato A. The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1. J Biol Chem. 2004;279:48630-9 pubmed publisher
    ..This finding suggests that His-246 is involved in the initial catechol deprotonation, whereas His-199 promotes the reaction between oxygen and the aromatic ring...
  64. Ramos J, Sol Cuenca M, Molina Santiago C, Segura A, Duque E, Gómez García M, et al. Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida. FEMS Microbiol Rev. 2015;39:555-66 pubmed publisher
    ..b>Pseudomonas putida strains contain a circular chromosome of approximately 6 Mbp which encodes about 5300 genes...
  65. Piotrowska A, Syguda A, Chrzanowski Å, Heipieper H. Toxicity of synthetic herbicides containing 2,4-D and MCPA moieties towards Pseudomonas putida mt-2 and its response at the level of membrane fatty acid composition. Chemosphere. 2016;144:107-12 pubmed publisher
    ..2,4-D and MCPA moieties was tested with the well investigated model organism for toxicity and adaptation, Pseudomonas putida mt-2. Results were compared to those obtained for commercial 2,4-D and MCPA herbicides...
  66. Escobar S, Rodriguez A, Gomez E, Alcon A, Santos V, Garcia Ochoa F. Influence of oxygen transfer on Pseudomonas putida effects on growth rate and biodesulfurization capacity. Bioprocess Biosyst Eng. 2016;39:545-54 pubmed publisher
    The growth rate and desulfurization capacity accumulated by the cells during the growth of Pseudomonas putida KTH2 under different oxygen transfer conditions in a stirred and sparged tank bioreactor have been studied...
  67. van Nuland Y, Eggink G, Weusthuis R. Application of AlkBGT and AlkL from Pseudomonas putida GPo1 for Selective Alkyl Ester ω-Oxyfunctionalization in Escherichia coli. Appl Environ Microbiol. 2016;82:3801-3807 pubmed publisher
    The enzyme system AlkBGT from Pseudomonas putida GPo1 can efficiently ω-functionalize fatty acid methyl esters. Outer membrane protein AlkL boosts this ω-functionalization...
  68. Harayama S, Rekik M, Bairoch A, Neidle E, Ornston L. Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases. J Bacteriol. 1991;173:7540-8 pubmed
    The xylXYZ DNA region is carried on the TOL pWW0 plasmid in Pseudomonas putida and encodes a benzoate dioxygenase with broad substrate specificity...
  69. Kang S, Radhakrishnan R, Khan A, Kim M, Park J, Kim B, et al. Gibberellin secreting rhizobacterium, Pseudomonas putida H-2-3 modulates the hormonal and stress physiology of soybean to improve the plant growth under saline and drought conditions. Plant Physiol Biochem. 2014;84:115-124 pubmed publisher
    The physiological changes in tolerant soybean plants under salt and drought stress conditions with Pseudomonas putida H-2-3 were investigated...
  70. Smułek W, Zdarta A, Pacholak A, Zgoła Grześkowiak A, Marczak Ł, Jarzębski M, et al. Saponaria officinalis L. extract: Surface active properties and impact on environmental bacterial strains. Colloids Surf B Biointerfaces. 2017;150:209-215 pubmed publisher
    ..An increase of up to 63% in diesel oil biodegradation was also recorded for Pseudomonas putida DA1 on addition of 1gL-1 of saponins from Saponaria officinalis L...
  71. Wittgens A, Santiago Schuebel B, Henkel M, Tiso T, Blank L, Hausmann R, et al. Heterologous production of long-chain rhamnolipids from Burkholderia glumae in Pseudomonas putida-a step forward to tailor-made rhamnolipids. Appl Microbiol Biotechnol. 2018;102:1229-1239 pubmed publisher
    ..for rhamnolipid biosynthesis in Burkholderia glumae were heterologously expressed in the non-pathogenic Pseudomonas putida KT2440. Our results show that long-chain rhamnolipids from Burkholderia spec. can be produced in P. putida...
  72. Takizawa N, Kaida N, Torigoe S, Moritani T, Sawada T, Satoh S, et al. Identification and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase and polycyclic aromatic hydrocarbon dihydrodiol dehydrogenase in Pseudomonas putida OUS82. J Bacteriol. 1994;176:2444-9 pubmed
    Naphthalene and phenanthrene are transformed by enzymes encoded by the pah gene cluster of Pseudomonas putida OUS82...
  73. Aly Saad Aly M, Gauthier M, Yeow J. On-chip cell lysis by antibacterial non-leaching reusable quaternary ammonium monolithic column. Biomed Microdevices. 2016;18:2 pubmed publisher
    ..Micrococcus luteus (Schroeter) (ATCC 4698) and Kocuria rosea (ATCC 186), and Gram-negative bacteria Pseudomonas putida (ATCC 12633) and Escherichia coli (ATCC 35218) by mechanically shearing the bacterial membrane when forcing ..
  74. Duckworth O, Markarian D, Parker D, Harrington J. A two-column flash chromatography approach to pyoverdin production from Pseudomonas putida GB1. J Microbiol Methods. 2017;135:11-13 pubmed publisher
    ..In this note, we describe a modified procedure for the low-cost, mg-scale purification of pyoverdin-type siderophores using a dual-flash chromatography (reverse-phase absorption and size exclusion) approach. ..
  75. Zhao W, Yang S, Huang Q, Cai P. Bacterial cell surface properties: role of loosely bound extracellular polymeric substances (LB-EPS). Colloids Surf B Biointerfaces. 2015;128:600-607 pubmed publisher
    ..surface properties of four bacteria (Bacillus subtilis, Streptococcus suis, Escherichia coli and Pseudomonas putida)...
  76. Tumen Velasquez M, Johnson C, Ahmed A, Dominick G, Fulk E, Khanna P, et al. Accelerating pathway evolution by increasing the gene dosage of chromosomal segments. Proc Natl Acad Sci U S A. 2018;115:7105-7110 pubmed publisher
    ..However, chromosomal integration of gcoAB in Pseudomonas putida or A...
  77. Harayama S, Rekik M. Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution. Mol Gen Genet. 1993;239:81-9 pubmed
    TOL plasmid pWW0 from Pseudomonas putida mt-2 encodes catabolic enzymes required for the oxidation of toluene and xylenes...
  78. García V, Reyes Darias J, Martín Mora D, Morel B, Matilla M, Krell T. Identification of a Chemoreceptor for C2 and C3 Carboxylic Acids. Appl Environ Microbiol. 2015;81:5449-57 pubmed publisher
    ..Here, we identify PP2861 (termed McpP) of Pseudomonas putida KT2440 as a chemoreceptor with a novel ligand profile...
  79. La Rosa R, Behrends V, Williams H, Bundy J, Rojo F. Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in Pseudomonas. Environ Microbiol. 2016;18:807-18 pubmed publisher
    ..metabolite profiling of culture supernatants (metabolic footprinting) over the course of growth of both Pseudomonas putida and P. aeruginosa, and compared the wild-type strains with deletion mutants for crc...
  80. Ashfaq M, Khan K, Rasool S, Mustafa G, Saif Ur Rehman M, Nazar M, et al. Occurrence and ecological risk assessment of fluoroquinolone antibiotics in hospital waste of Lahore, Pakistan. Environ Toxicol Pharmacol. 2016;42:16-22 pubmed publisher
    ..The maximum RQ values for ofloxacin against Vibrio fisheri, Pseudomonas putida, fish, Daphnia, Green algae and Pseudokirchneriella subcapitata were 3300, 66,000, 124, 46, 3300 and 6000, ..
  81. Pastor N, Masciarelli O, Fischer S, Luna V, Rovera M. Potential of Pseudomonas putida PCI2 for the Protection of Tomato Plants Against Fungal Pathogens. Curr Microbiol. 2016;73:346-353 pubmed publisher
    ..Chain Reaction studies to detect the presence of genes encoding antifungal compounds in the DNA of Pseudomonas putida strain PCI2...
  82. Röllen K, Granzin J, Panwalkar V, Arinkin V, Rani R, Hartmann R, et al. Signaling States of a Short Blue-Light Photoreceptor Protein PpSB1-LOV Revealed from Crystal Structures and Solution NMR Spectroscopy. J Mol Biol. 2016;428:3721-36 pubmed publisher
    ..Here, we report the dark-state crystal structure of PpSB1-LOV, a slow-reverting short LOV protein from Pseudomonas putida that is remarkably different from our previously published "fully light-adapted" structure [1]...
  83. Pei X, Yang Z, Wang A, Yang L, Wu J. Identification and functional analysis of the activator gene involved in the biosynthesis of Co-type nitrile hydratase from Aurantimonas manganoxydans. J Biotechnol. 2017;251:38-46 pubmed publisher
    ..The activator gene can be substituted by Co-type activator from Pseudonocardia thermophila JCM3095 and Pseudomonas putida 5B to assist in the functional expression of NHase1229, not by that of Fe-type NHase from Pseudomonas putida ..
  84. Krüger U, Bak F, Aamand J, Nybroe O, Badawi N, Smets B, et al. Novel Method Reveals a Narrow Phylogenetic Distribution of Bacterial Dispersers in Environmental Communities Exposed to Low-Hydration Conditions. Appl Environ Microbiol. 2018;84: pubmed publisher
    ..The method was first validated by distinguishing motile Pseudomonas putida and Flavobacterium johnsoniae strains from their nonmotile mutants...
  85. Grösbacher M, Eckert D, Cirpka O, Griebler C. Contaminant concentration versus flow velocity: drivers of biodegradation and microbial growth in groundwater model systems. Biodegradation. 2018;29:211-232 pubmed publisher
    ..systems with varying concentrations of contaminant in the inflow and flow velocities applying the aerobic Pseudomonas putida strain F1 and the denitrifying Aromatoleum aromaticum strain EbN1...
  86. de Lima G, de Souza R, Bozzi A, Poplawska M, Devine D, Nugent M. Extraction Method Plays Critical Role in Antibacterial Activity of Propolis-Loaded Hydrogels. J Pharm Sci. 2016;105:1248-57 pubmed publisher
    ..against 4 different bacteria, namely: Staphylococcus aureus, Escherichia coli, Salmonella typhimurium, and Pseudomonas putida. Swelling studies indicated that the swelling of the hydrogel was inversely related to propolis content...
  87. Belda E, van Heck R, José Lopez Sanchez M, Cruveiller S, Barbe V, Fraser C, et al. The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis. Environ Microbiol. 2016;18:3403-3424 pubmed publisher
    By the time the complete genome sequence of the soil bacterium Pseudomonas putida KT2440 was published in 2002 (Nelson et al...
  88. Ortega Calvo J, Jímenez Sánchez C, Pratarolo P, Pullin H, Scott T, Thompson I. Tactic response of bacteria to zero-valent iron nanoparticles. Environ Pollut. 2016;213:438-445 pubmed publisher
    ..In this study, we investigated the tactic response of Pseudomonas putida G7, a representative of soil bacterium, towards engineered zero-valent iron nanoparticles (nZVIs), as a new ..
  89. Xiao Y, Liu H, Nie H, Xie S, Luo X, Chen W, et al. Expression of the phosphodiesterase BifA facilitating swimming motility is partly controlled by FliA in Pseudomonas putida KT2440. Microbiologyopen. 2017;6: pubmed publisher
    ..Our results suggest that FliA acts as a negative regulator to modulate the c-di-GMP level via controlling transcription of bifA to facilitate swimming motility. ..
  90. Kim J, Salvador M, Saunders E, González J, Avignone Rossa C, Jiménez J. Properties of alternative microbial hosts used in synthetic biology: towards the design of a modular chassis. Essays Biochem. 2016;60:303-313 pubmed
    ..We highlight Pseudomonas putida, widely used in many different biotechnological applications as a prominent organism for synthetic biology ..
  91. Harris J, Daugulis A. Biocompatibility of low molecular weight polymers for two-phase partitioning bioreactors. Biotechnol Bioeng. 2015;112:2450-8 pubmed publisher
    ..glycol polymers over a molecular weight (MW) range of 425-4,000 to Saccharomyces cerevisiae and Pseudomonas putida, two organisms which have been previously used in TPPB systems...
  92. France M, Remold S. Interference Competition Among Household Strains of Pseudomonas. Microb Ecol. 2016;72:821-830 pubmed
    ..of the Pseudomonas aeruginosa (n = 29), Pseudomonas fluorescens (n = 21), and Pseudomonas putida (n = 39) species groups for the presence of killing...