Photobacterium profundum SS9

Summary

Alias: Photobacterium SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9

Top Publications

  1. ncbi Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium
    D Bartlett
    The Agouron Institute, La Jolla, CA 92037
    Nature 342:572-4. 1989
  2. pmc Escherichia coli dinG gene encodes a putative DNA helicase related to a group of eukaryotic helicases including Rad3 protein
    E V Koonin
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894
    Nucleic Acids Res 21:1497. 1993
  3. ncbi Sequence of the ompH gene from the deep-sea bacterium Photobacterium SS9
    D H Bartlett
    Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093 0202
    Gene 131:125-8. 1993
  4. pmc Isolation and characterization of the structural gene for OmpL, a pressure-regulated porin-like protein from the deep-sea bacterium Photobacterium species strain SS9
    T J Welch
    Center for Marine Biomedicine and Biotechnology, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093 0202, USA
    J Bacteriol 178:5027-31. 1996
  5. ncbi An rpoE-like locus controls outer membrane protein synthesis and growth at cold temperatures and high pressures in the deep-sea bacterium Photobacterium sp. strain SS9
    E Chi
    Marine Biology Research Division, 0202, Scripps Institution of Oceanography, University of California at San Diego, La Jolla 92093 0202, USA
    Mol Microbiol 17:713-26. 1995
  6. ncbi Cloning, sequencing and overexpression of the gene encoding malate dehydrogenase from the deep-sea bacterium Photobacterium species strain SS9
    T J Welch
    Center for Marine Biotechnology and Biomedicine, Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093 0202, USA
    Biochim Biophys Acta 1350:41-6. 1997
  7. ncbi Triose-phosphate isomerase (TIM) of the psychrophilic bacterium Vibrio marinus. Kinetic and structural properties
    M Alvarez
    Laboratoire de Biologie Moléculaire et de Génie Génétique, Universite de Liege, Sart Tilman, Belgium
    J Biol Chem 273:2199-206. 1998
  8. ncbi Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9
    T J Welch
    Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla 92093 0202, USA
    Mol Microbiol 27:977-85. 1998
  9. pmc RecD function is required for high-pressure growth of a deep-sea bacterium
    K A Bidle
    Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093 0202, USA
    J Bacteriol 181:2330-7. 1999
  10. pmc FabF is required for piezoregulation of cis-vaccenic acid levels and piezophilic growth of the deep-Sea bacterium Photobacterium profundum strain SS9
    E E Allen
    Center for Marine Biotechnology and Biomedicine, Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093 0202, USA
    J Bacteriol 182:1264-71. 2000

Patents

  1. METHODS AND COMPOSITIONS FOR CONTROLLING GENE EXPRESSION BY RNA PROCESSING
  2. Plants with increased tolerance and/or resistance to environmental stress and increased biomass production
  3. Plants with increased yield
  4. Lipid metabolism proteins, combinations of lipid metabolism proteins and uses thereof
  5. Process for the production of lutein
  6. Method for producing a transgenic plant cell, a plant or a part thereof with increased resistance biotic stress
  7. Plants with increased yield (nue)
  8. Process for the production of fine chemicals
  9. Process for the control of production of fine chemicals
  10. Proteins associated with abiotic stress response and homologs

Scientific Experts

  • Yuji Honda
  • Fabiano L Thompson
  • Carlos R Osorio
  • D H Bartlett
  • T J Welch
  • K A Bidle
  • Eric E Allen
  • E E Allen
  • M Alvarez
  • E Chi
  • Douglas H Bartlett
  • D Maes
  • V Mainfroid
  • R K Wierenga
  • F Rentier-Delrue
  • J A Martial
  • L Wyns
  • J P Zeelen
  • E V Koonin
  • M E Wright
  • D Bartlett
  • M Wright
  • A A Yayanos
  • M Silverman

Detail Information

Publications15

  1. ncbi Isolation of a gene regulated by hydrostatic pressure in a deep-sea bacterium
    D Bartlett
    The Agouron Institute, La Jolla, CA 92037
    Nature 342:572-4. 1989
    ..The function of the OmpH protein in adaptation to high pressure and the use of the ompH gene in studying how bacteria sense and respond to pressure is discussed...
  2. pmc Escherichia coli dinG gene encodes a putative DNA helicase related to a group of eukaryotic helicases including Rad3 protein
    E V Koonin
    National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894
    Nucleic Acids Res 21:1497. 1993
  3. ncbi Sequence of the ompH gene from the deep-sea bacterium Photobacterium SS9
    D H Bartlett
    Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093 0202
    Gene 131:125-8. 1993
    ..One exception is the discovery that the moderate barophile Photobacterium SS9 preferentially synthesizes a 37-kDa outer membrane protein, designated OmpH, in response to elevated ..
  4. pmc Isolation and characterization of the structural gene for OmpL, a pressure-regulated porin-like protein from the deep-sea bacterium Photobacterium species strain SS9
    T J Welch
    Center for Marine Biomedicine and Biotechnology, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093 0202, USA
    J Bacteriol 178:5027-31. 1996
    ..The deduced amino acid sequence of OmpL displays sequence homology to porin proteins from enteric bacteria. Gene fusion and primer extension analyses indicate that ompL is transcriptionally regulated by pressure...
  5. ncbi An rpoE-like locus controls outer membrane protein synthesis and growth at cold temperatures and high pressures in the deep-sea bacterium Photobacterium sp. strain SS9
    E Chi
    Marine Biology Research Division, 0202, Scripps Institution of Oceanography, University of California at San Diego, La Jolla 92093 0202, USA
    Mol Microbiol 17:713-26. 1995
    ..Complementation analyses indicated that ORF3 functions in OMP synthesis regulation while ORF4 is required for baro- and psychro-adaptation...
  6. ncbi Cloning, sequencing and overexpression of the gene encoding malate dehydrogenase from the deep-sea bacterium Photobacterium species strain SS9
    T J Welch
    Center for Marine Biotechnology and Biomedicine, Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla 92093 0202, USA
    Biochim Biophys Acta 1350:41-6. 1997
    ..A comparison of SS9 MDH to three mesophile MDHs, a MDH sequence obtained from another deep-sea bacterium, and to other psychrophile proteins is presented...
  7. ncbi Triose-phosphate isomerase (TIM) of the psychrophilic bacterium Vibrio marinus. Kinetic and structural properties
    M Alvarez
    Laboratoire de Biologie Moléculaire et de Génie Génétique, Universite de Liege, Sart Tilman, Belgium
    J Biol Chem 273:2199-206. 1998
    ..The vTIM mutant A238S was produced and characterized. Compared with wild type, the catalytic efficiency of the A238S mutant is somewhat reduced, and its stability is considerably increased...
  8. ncbi Identification of a regulatory protein required for pressure-responsive gene expression in the deep-sea bacterium Photobacterium species strain SS9
    T J Welch
    Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California San Diego, La Jolla 92093 0202, USA
    Mol Microbiol 27:977-85. 1998
    ..The SS9 ToxR system represents a useful model for studies of signal transduction and environmental adaptation in the largest portion of the biosphere, the deep sea...
  9. pmc RecD function is required for high-pressure growth of a deep-sea bacterium
    K A Bidle
    Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093 0202, USA
    J Bacteriol 181:2330-7. 1999
    A genomic library derived from the deep-sea bacterium Photobacterium profundum SS9 was conjugally delivered into a previously isolated pressure-sensitive SS9 mutant, designated EC1002 (E. Chi and D. H. Bartlett, J. Bacteriol...
  10. pmc FabF is required for piezoregulation of cis-vaccenic acid levels and piezophilic growth of the deep-Sea bacterium Photobacterium profundum strain SS9
    E E Allen
    Center for Marine Biotechnology and Biomedicine, Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093 0202, USA
    J Bacteriol 182:1264-71. 2000
    ..low-temperature growth, the fabF gene from the psychrotolerant, piezophilic deep-sea bacterium Photobacterium profundum strain SS9 was characterized and its role and regulation were examined...
  11. pmc RNA arbitrarily primed PCR survey of genes regulated by ToxR in the deep-sea bacterium Photobacterium profundum strain SS9
    K A Bidle
    Marine Biology Research Division, Scripps Institution of Oceanography, La Jolla, California 92093 0202, USA
    J Bacteriol 183:1688-93. 2001
    We are currently investigating the role of ToxR-mediated gene regulation in Photobacterium profundum strain SS9. SS9 is a moderately piezophilic ("pressure loving") psychrotolerant marine bacterium belonging to the family Vibrionaceae...
  12. ncbi Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9
    Eric E Allen
    Center for Marine Biotechnology and Biomedicine, Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093 0202, USA
    Microbiology 148:1903-13. 2002
    ..This paper presents the sequence of a 33 kbp locus from the deep-sea bacterium Photobacterium profundum strain SS9 which includes four of the five genes required for EPA biosynthesis...
  13. ncbi Identification of Fur regulated genes in the bacterial fish pathogen Photobacterium damselae ssp. piscicida using the Fur titration assay
    Carlos R Osorio
    Departamento de Microbioloxia e Parasitoloxia, Instituto de Acuicultura, Universidade de Santiago de Compostela, Santiago de Compostela, Galicia, Spain
    Biometals 17:725-33. 2004
    ..Genes encoding a putative complete iron-regulated outer membrane transport protein and a pseudogene of a transport protein were found. The FURTA assay also revealed iron regulation of the AraC type transcriptional regulation...
  14. ncbi Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching
    F L Thompson
    Microbial Resources Division and Brazilian Collection of Environmental and Industrial Micro organisms CBMAI, CPQBA, CP 6171, UNICAMP, CEP 13081 970, Sao Paulo, Brazil
    Int J Syst Evol Microbiol 55:913-7. 2005
    ..nov. (type strain LMG 22228(T)=CBMAI 623(T)=CC17(T)) are proposed to accommodate these new isolates. The G+C contents of the DNA of the two type strains are respectively 47.6 and 48.2 mol%...
  15. doi Elucidation of exo-beta-D-glucosaminidase activity of a family 9 glycoside hydrolase (PBPRA0520) from Photobacterium profundum SS9
    Yuji Honda
    Department of Food Science, Ishikawa Prefectural University, 1 308 Suematsu, Nonoichi, Ishikawa 921 8836, Japan
    Glycobiology 21:503-11. 2011
    A glycoside hydrolase (GH) gene from Photobacterium profundum SS9 (PBPRA0520) belonging to GH family 9 was expressed in Escherichia coli...

Patents14

  1. METHODS AND COMPOSITIONS FOR CONTROLLING GENE EXPRESSION BY RNA PROCESSING
    Patent Number: EP2880171-A2; Date:2015-06-10
  2. Plants with increased tolerance and/or resistance to environmental stress and increased biomass production
    Patent Number: WO2008142034-A2; Date:2008-11-27
  3. Plants with increased yield
    Patent Number: WO2009037279-A1; Date:2009-03-26
  4. Lipid metabolism proteins, combinations of lipid metabolism proteins and uses thereof
    Patent Number: WO2009077406-A1; Date:2009-06-25
  5. Process for the production of lutein
    Patent Number: EP2096177-A2; Date:2009-09-02
  6. Method for producing a transgenic plant cell, a plant or a part thereof with increased resistance biotic stress
    Patent Number: WO2010037714-A1; Date:2010-04-08
  7. Plants with increased yield (nue)
    Patent Number: WO2010046221-A1; Date:2010-04-29
  8. Process for the production of fine chemicals
    Patent Number: EP2194140-A2; Date:2010-06-09
  9. Process for the control of production of fine chemicals
    Patent Number: EP2199304-A1; Date:2010-06-23
  10. Proteins associated with abiotic stress response and homologs
    Patent Number: EP2221382-A2; Date:2010-08-25
  11. STRUCTURE-BASED COMPOUND DESIGN INVOLVING RIBOSWITCHES
    Patent Number: JP2012065661-A; Date:2012-04-05
  12. RECOMBINANT HOST CELLS COMPRISING PHOSPHOKETOLASES
    Patent Number: KR1020130117753-A; Date:2013-10-28
  13. STRUCTURE-BASED COMPOUND DESIGN INVOLVING RIBOSWITCHES
    Patent Number: JP2008518630-A; Date:2008-06-05
  14. Proteins associated with abiotic stress response and homologs
    Patent Number: WO2007110314-A; Date:2007-10-04