Deltaproteobacteria

Summary

Alias: d-proteobacteria, Dissimilatory sulfate or sulfur reducers, Sulfate- or sulfur-reducing dissimilatory bacteria, Sulfate-reducing or sulfur-reducing dissimilatory bacteria, "Deltabacteria" Cavalier-Smith 1992, Deltabacteria Cavalier-Smith 2002, Proteobacteria delta subdivision, Purple bacteria, delta subdivision, delta proteobacteria, delta subdivision, delta subgroup, Deltaproteobacteria Kuever et al. 2006

Top Publications

  1. Grant C, LeGault K, Rahn Lee L, Komeili A. A method for genome editing in the anaerobic magnetotactic bacterium Desulfovibrio magneticus RS-1. Appl Environ Microbiol. 2018;: pubmed publisher
    ..i>Desulfovibrio magneticus RS-1, a cultured representative of the deeply-branching MTB of the class Deltaproteobacteria. This marks a crucial step in developing D...
  2. Kazakov A, Rajeev L, Chen A, Luning E, Dubchak I, Mukhopadhyay A, et al. σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough. BMC Genomics. 2015;16:919 pubmed publisher
    ..vulgaris Hildenborough and related free-living Deltaproteobacteria. Our study provides a representative collection of σ(54)-dependent regulons that can be used for ..
  3. Timonen S, Sinkko H, Sun H, Sietiö O, Rinta Kanto J, Kiheri H, et al. Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus. Microb Ecol. 2017;73:939-953 pubmed publisher
    ..Soil samples contained more Actinobacteria, Deltaproteobacteria, Opitutae, and Planctomycetia, whereas Armatimonadia, Betaproteobacteria, Gammaproteobacteria, and ..
  4. Wu X, Pedersen K, Edlund J, Eriksson L, Aström M, Andersson A, et al. Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters. Microbiome. 2017;5:37 pubmed publisher
    ..is thus likely to be mediated by a few bacterial populations which were similar to Epsilonproteobacteria, Deltaproteobacteria, Betaproteobacteria, Verrucomicrobia, and unclassified bacteria...
  5. Krumholz L, Bradstock P, Sheik C, Diao Y, Gazioglu O, Gorby Y, et al. Syntrophic growth of Desulfovibrio alaskensis requires genes for H2 and formate metabolism as well as those for flagellum and biofilm formation. Appl Environ Microbiol. 2015;81:2339-48 pubmed publisher
    ..cycling, including a rhodanese-containing complex that is phylogenetically conserved among sulfate-reducing Deltaproteobacteria. Utilizing an mRNA sequencing approach, analysis of transcript abundance in wild-type axenic and cocultures ..
  6. Hallberg Z, Wang X, Wright T, Nan B, Ad O, Yeo J, et al. Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3', 3'-cGAMP). Proc Natl Acad Sci U S A. 2016;113:1790-5 pubmed publisher
    ..assays that hybrid CDN-producing and promiscuous substrate-binding (Hypr) GGDEF enzymes are found in other deltaproteobacteria. Finally, we validated the predictive power of our analysis by showing that cAG is present in surface-grown ..
  7. Hall A, Subramanian S, Oshiro R, Canzoneri A, Kearns D. SwrD (YlzI) Promotes Swarming in Bacillus subtilis by Increasing Power to Flagellar Motors. J Bacteriol. 2018;200: pubmed publisher
    ..flagellar motors generate power is primarily studied in Escherichia coli, and SwrD likely increases power in other organisms, like the Firmicutes, Clostridia, Spirochaetes, and the Deltaproteobacteria.
  8. Yitbarek A, Weese J, Alkie T, Parkinson J, Sharif S. Influenza A virus subtype H9N2 infection disrupts the composition of intestinal microbiota of chickens. FEMS Microbiol Ecol. 2017;: pubmed publisher
    ..However, post-H9N2 infection, class Deltaproteobacteria, orders Clostridiales and Bacteroidiales and the genus Alistipes were differentially enriched...
  9. Jin C, Zeng Z, Fu Z, Jin Y. Oral imazalil exposure induces gut microbiota dysbiosis and colonic inflammation in mice. Chemosphere. 2016;160:349-58 pubmed publisher
    ..At the genus level, the abundance of Lactobacillus and Bifidobacterium decreased while those of Deltaproteobacteria and Desulfovibrio increased in response to IMZ exposure...

More Information

Publications153 found, 100 shown here

  1. Liu G, Liang L, Yu G, Li Q. Pumpkin polysaccharide modifies the gut microbiota during alleviation of type 2 diabetes in rats. Int J Biol Macromol. 2018;115:711-717 pubmed publisher
    ..the structure of gut microbiota and had selective enrichment in key species of Bacteroidetes, Prevotella, Deltaproteobacteria, Oscillospira, Veillonellaceae, Phascolarctobacterium, Sutterella, and Bilophila...
  2. Pérez Rodríguez I, Rawls M, Coykendall D, Foustoukos D. Deferrisoma palaeochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea. Int J Syst Evol Microbiol. 2016;66:830-836 pubmed publisher
    ..organism is closely related to Deferrisoma camini, the first species of a recently described genus in the Deltaproteobacteria. Based on the 16S rRNA gene phylogenetic analysis and on physiological, biochemical and structural ..
  3. Caton I, Caton T, Schneegurt M. Nitrogen-fixation activity and the abundance and taxonomy of nifH genes in agricultural, pristine, and urban prairie stream sediments chronically exposed to different levels of nitrogen loading. Arch Microbiol. 2018;200:623-633 pubmed publisher
    ..The nifH sequences observed were assigned to cyanobacteria, Deltaproteobacteria, Methylococcus, and Rhizobia...
  4. Geelhoed J, Henstra A, Stams A. Carboxydotrophic growth of Geobacter sulfurreducens. Appl Microbiol Biotechnol. 2016;100:997-1007 pubmed publisher
    ..Similar gene clusters are present in several other species belonging to the Deltaproteobacteria and Firmicutes, for which CO utilization is currently not known.
  5. Torres M, Uroz S, Salto R, Fauchery L, Quesada E, Llamas I. HqiA, a novel quorum-quenching enzyme which expands the AHL lactonase family. Sci Rep. 2017;7:943 pubmed publisher
    ..The complete sequence analysis of the fosmid showed that 31 ORFs out of the 46 identified were related to Deltaproteobacteria, whilst many intercalated ORFs presented high homology with other taxa...
  6. Foley P, Hsieh P, Luciano D, Belasco J. Specificity and evolutionary conservation of the Escherichia coli RNA pyrophosphohydrolase RppH. J Biol Chem. 2015;290:9478-86 pubmed publisher
    ..likely to share its relaxed sequence specificity are widespread in all classes of Proteobacteria, except Deltaproteobacteria, and in flowering plants. By contrast, the phylogenetic range of recognizable B...
  7. Tan B, Semple K, Foght J. Anaerobic alkane biodegradation by cultures enriched from oil sands tailings ponds involves multiple species capable of fumarate addition. FEMS Microbiol Ecol. 2015;91: pubmed publisher
    ..but were slow to degrade 2-methylpentane and methylcyclopentane; these cultures were enriched in Deltaproteobacteria rather than Clostridia. 3-Methylpentane was not degraded by any cultures...
  8. Mark Ibekwe A, Murinda S, Murry M, Schwartz G, Lundquist T. Microbial community structures in high rate algae ponds for bioconversion of agricultural wastes from livestock industry for feed production. Sci Total Environ. 2017;580:1185-1196 pubmed publisher
  9. Xie Y, Wang J, Wu Y, Ren C, Song C, Yang J, et al. Using in situ bacterial communities to monitor contaminants in river sediments. Environ Pollut. 2016;212:348-357 pubmed publisher
    ..correlated with the essential "core" of the bacterial interaction network (Betaproteobacteria and Deltaproteobacteria)...
  10. Nam J, Yates M, Zaybak Z, Logan B. Examination of protein degradation in continuous flow, microbial electrolysis cells treating fermentation wastewater. Bioresour Technol. 2014;171:182-6 pubmed publisher
    ..2V; -338±38 mV, 1.0 V; -0.426±4 mV, 0.9V). Bacteria on the anodes with FWW were primarily Deltaproteobacteria, while Archaea were predominantly Methanobacterium.
  11. Wang H, Cao X, Li L, Fang Z, Li X. Augmenting atrazine and hexachlorobenzene degradation under different soil redox conditions in a bioelectrochemistry system and an analysis of the relevant microorganisms. Ecotoxicol Environ Saf. 2018;147:735-741 pubmed publisher
    ..In addition, the microbial community analysis demonstrated that Proteobacteria, especially Deltaproteobacteria involved in current generation was extremely abundant (27...
  12. Mahmoudi N, Robeson M, Castro H, Fortney J, Techtmann S, Joyner D, et al. Microbial community composition and diversity in Caspian Sea sediments. FEMS Microbiol Ecol. 2015;91:1-11 pubmed publisher
    ..while surface sediments collected from bottom waters under hypoxic conditions were dominated by Deltaproteobacteria, specifically sulfate-reducing bacteria...
  13. Li Y, Sun Q, Zhan J, Yang Y, Wang D. Soil-covered strategy for ecological restoration alters the bacterial community structure and predictive energy metabolic functions in mine tailings profiles. Appl Microbiol Biotechnol. 2017;101:2549-2561 pubmed publisher
    ..to revegetation, soil-covered strategy exhibited the higher relative abundance of Acidobacteria and Deltaproteobacteria and the lower relative abundance of Bacteroidetes, Gemmatimonadetes, Betaproteobacteria, and ..
  14. Bergauer K, Fernandez Guerra A, Garcia J, Sprenger R, Stepanauskas R, Pachiadaki M, et al. Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics. Proc Natl Acad Sci U S A. 2018;115:E400-E408 pubmed publisher
    ..players with highest expression of solute transporters were Alphaproteobacteria, Gammaproteobacteria, and Deltaproteobacteria, accounting for 40%, 11%, and 10%, respectively, of relative protein abundances...
  15. Zheng H, Wang X, Luo X, Wang Z, Xing B. Biochar-induced negative carbon mineralization priming effects in a coastal wetland soil: Roles of soil aggregation and microbial modulation. Sci Total Environ. 2018;610-611:951-960 pubmed publisher
    ..g., Actinobacteria and Deltaproteobacteria) and the bacteria taxa responsible for stabilizing soil aggregates (e.g...
  16. Barco R, Hoffman C, Ramírez G, Toner B, Edwards K, Sylvan J. In-situ incubation of iron-sulfur mineral reveals a diverse chemolithoautotrophic community and a new biogeochemical role for Thiomicrospira. Environ Microbiol. 2017;19:1322-1337 pubmed publisher
    ..incubated in the water column while samples incubated at the surface sediment showed more even dominance by Deltaproteobacteria (Desulfobulbus), Gammaproteobacteria (Piscirickettsiaceae), Alphaproteobacteria (Rhodobacteraceae), and ..
  17. Dai Y, Yang Y, Wu Z, Feng Q, Xie S, Liu Y. Spatiotemporal variation of planktonic and sediment bacterial assemblages in two plateau freshwater lakes at different trophic status. Appl Microbiol Biotechnol. 2016;100:4161-75 pubmed publisher
    ..while sediment bacterial communities were mainly represented by Proteobacteria (mainly Beta- and Deltaproteobacteria), Bacteroidetes, Chlorobi, Nitrospirae, Acidobacteria, and Chloroflexi...
  18. Szymańska S, Borruso L, Brusetti L, Hulisz P, Furtado B, Hrynkiewicz K. Bacterial microbiome of root-associated endophytes of Salicornia europaea in correspondence to different levels of salinity. Environ Sci Pollut Res Int. 2018;25:25420-25431 pubmed publisher
    ..europaea, and the significant prevalence of representatives from the phyla Deltaproteobacteria, Acidobacteria, Caldithrix, Fibrobacteres, and Verrucomicrobia at the more saline test site suggest ..
  19. Iwaoka C, Imada S, Taniguchi T, Du S, Yamanaka N, Tateno R. The Impacts of Soil Fertility and Salinity on Soil Nitrogen Dynamics Mediated by the Soil Microbial Community Beneath the Halophytic Shrub Tamarisk. Microb Ecol. 2018;75:985-996 pubmed publisher
    ..unsuitable salinity conditions for other important decomposers, Flavobacteria, Gammaproteobacteria, and Deltaproteobacteria, by mitigating salt accumulation...
  20. Baker L, Alegado R, Kemp P. Response of diatom-associated bacteria to host growth state, nutrient concentrations, and viral host infection in a model system. Environ Microbiol Rep. 2016;: pubmed publisher
    ..other 16% of the attached bacterial assemblage include Alphaproteobacteria, Betaproteobacteria, Bacilli, Deltaproteobacteria, other Gammaproteobacteria and Flavobacteria...
  21. Hahm M, Son J, Kim B, Ghim S. Comparative study of rhizobacterial communities in pepper greenhouses and examination of the effects of salt accumulation under different cropping systems. Arch Microbiol. 2017;199:303-315 pubmed publisher
    ..and Gemmatimonadetes and negatively correlated with the abundance of Acidobacteria, Chloroflexi, and Deltaproteobacteria. This is the first study on the rhizobacterial communities in pepper greenhouses under two different ..
  22. Guan W, Yin M, He T, Xie S. Influence of substrate type on microbial community structure in vertical-flow constructed wetland treating polluted river water. Environ Sci Pollut Res Int. 2015;22:16202-9 pubmed publisher
    ..1-62.3 %), mainly composed of Alpha-, Beta-, Gamma-, and Deltaproteobacteria, showed the dominance and might contribute to the effective reduction of organic pollutants...
  23. Nelson M, Martiny A, Martiny J. Global biogeography of microbial nitrogen-cycling traits in soil. Proc Natl Acad Sci U S A. 2016;113:8033-40 pubmed publisher
    ..For instance, taxa within the Deltaproteobacteria encoded all eight N pathways, whereas those within the Cyanobacteria primarily encoded three pathways...
  24. Burbano C, Grönemeyer J, Hurek T, Reinhold Hurek B. Microbial community structure and functional diversity of nitrogen-fixing bacteria associated with Colophospermum mopane. FEMS Microbiol Ecol. 2015;91: pubmed publisher
    ..the sequences were related to the order Rhizobiales but also to Spirochaetes, Firmicutes, Bacteroidetes and Deltaproteobacteria. Several isolates showed characteristics of plant growth-promoting bacteria...
  25. Foght J, Gieg L, Siddique T. The microbiology of oil sands tailings: past, present, future. FEMS Microbiol Ecol. 2017;93: pubmed publisher
    ..In particular, the interactions of Deltaproteobacteria and Firmicutes with methanogenic archaea impact greenhouse gas emissions, sulfur cycling, pore water ..
  26. Falås P, Jewell K, Hermes N, Wick A, Ternes T, Joss A, et al. Transformation, CO2 formation and uptake of four organic micropollutants by carrier-attached microorganisms. Water Res. 2018;141:405-416 pubmed publisher
    ..e. Firmicutes, Gammaproteobacteria, and Deltaproteobacteria) were present in both biofilms...
  27. Soni R, Suyal D, Sai S, Goel R. Exploration of nifH gene through soil metagenomes of the western Indian Himalayas. 3 Biotech. 2016;6:25 pubmed publisher
    ..Alignment of these clones with culturable bacterial database suggests that most of the sequences belong to ?-proteobacterium group. ..
  28. Kashkak E, Bel kova N, Danilova E, Dagurova O, Namsaraev B, Gorlenko V. Phylogenetic and Functional Prokaryotic Diversity in the Hoito-Gol Mesothermal Mineral Spring (Eastern Savan Mountains. Buryat Renuhlie). Mikrobiologiia. 2016;85:555-567 pubmed
    ..in the sulfur cycle predominated, including sulfur-reducing bacteria Sulfurospirillum, sulfate-reducing deltaproteobacteria, sulfur- oxidizing chemoautotrophic bacteria, anoxygenic phototrophic bacteria of,the phyla Chloroflexi and ..
  29. Adetutu E, Gundry T, Patil S, Golneshin A, Adigun J, Bhaskarla V, et al. Exploiting the intrinsic microbial degradative potential for field-based in situ dechlorination of trichloroethene contaminated groundwater. J Hazard Mater. 2015;300:48-57 pubmed publisher
    ..Metagenomic assays revealed shifts from Gammaproteobacteria (pre-treatment) to Epsilonproteobacteria and Deltaproteobacteria (post-treatment) only in stimulated wells...
  30. Lin W, Pan Y. A putative greigite-type magnetosome gene cluster from the candidate phylum Latescibacteria. Environ Microbiol Rep. 2015;7:237-42 pubmed publisher
    ..genes are phylogenetically closely related to greigite-type magnetosome genes that were only found from the Deltaproteobacteria MTB before, suggesting that the greigite genes may originate earlier than previously imagined...
  31. Navarrete A, Diniz T, Braga L, Silva G, Franchini J, Rossetto R, et al. Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems. PLoS ONE. 2015;10:e0129765 pubmed publisher
    ..Across 57 soil metagenomic datasets, Actinobacteria (31.5%), Planctomycetes (12.3%), Deltaproteobacteria (12.3%), Alphaproteobacteria (12.0%) and Betaproteobacteria (11...
  32. Hou D, Wang R, Gao X, Wang K, Lin Z, Ge J, et al. Cultivar-specific response of bacterial community to cadmium contamination in the rhizosphere of rice (Oryza sativa L.). Environ Pollut. 2018;241:63-73 pubmed publisher
    ..Taxa specifically enriched in the HA rhizosphere (phyla Bacteroidetes, Firmicutes, and Deltaproteobacteria) can directly or indirectly participate in metal activation, whereas the LA rhizosphere was highly ..
  33. Sun X, Zhou Y, Tan Y, Wu Z, Lu P, Zhang G, et al. Restoration with pioneer plants changes soil properties and remodels the diversity and structure of bacterial communities in rhizosphere and bulk soil of copper mine tailings in Jiangxi Province, China. Environ Sci Pollut Res Int. 2018;25:22106-22119 pubmed publisher
    ..A detailed taxonomic composition analysis demonstrated that Alphaproteobacteria and Deltaproteobacteria, Chloroflexi, Acidobacteria, and Gemmatimonadetes showed significantly higher relative abundance in ..
  34. Deng J, Gu Y, Zhang J, Xue K, Qin Y, Yuan M, et al. Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska. Mol Ecol. 2015;24:222-34 pubmed publisher
    ..Collectively, this study revealed different impacts of thaw in the organic and mineral horizons and suggests the importance of studying both the upper and deeper soils while evaluating microbial responses to permafrost thaw. ..
  35. Liu J, Chen X, Shu H, Lin X, Zhou Q, Bramryd T, et al. Microbial community structure and function in sediments from e-waste contaminated rivers at Guiyu area of China. Environ Pollut. 2018;235:171-179 pubmed publisher
    ..High-throughput 16S rRNA gene sequencing showed that Proteobacteria (particularly Deltaproteobacteria) dominated the sediment microbial assemblages followed by Bacteroidetes, Acidobacteria, Chloroflexi and ..
  36. Karnachuk O, Mardanov A, Avakyan M, Kadnikov V, Vlasova M, Beletsky A, et al. Draft genome sequence of the first acid-tolerant sulfate-reducing deltaproteobacterium Desulfovibrio sp. TomC having potential for minewater treatment. FEMS Microbiol Lett. 2015;362: pubmed publisher
    ..This bacterium, being the first reported acid-tolerant gram-negative sulfate-reducer of the order Deltaproteobacteria, is able to grow at pH as low as 2.5 and is resistant to high concentrations of metals. The draft 5...
  37. Eder S, Gigler A, Hanzlik M, Winklhofer M. Sub-micrometer-scale mapping of magnetite crystals and sulfur globules in magnetotactic bacteria using confocal Raman micro-spectrometry. PLoS ONE. 2014;9:e107356 pubmed publisher
    ..While greigite (cubic Fe3S4; Raman lines of 253 and 351 cm(-1)) is often found in the Deltaproteobacteria class, it is not present in our samples...
  38. El Khalloufi F, Oufdou K, Bertrand M, Lahrouni M, Oudra B, Ortet P, et al. Microbiote shift in the Medicago sativa rhizosphere in response to cyanotoxins extract exposure. Sci Total Environ. 2016;539:135-142 pubmed publisher
    ..Gemmatimonas, Actinobacteria, Deltaproteobacteria and Opitutae mainly inhabited the bulk soil, whereas, the root-adhering soil and the root tissues were ..
  39. Wang X, Van Nostrand J, Deng Y, Lü X, Wang C, Zhou J, et al. Scale-dependent effects of climate and geographic distance on bacterial diversity patterns across northern China's grasslands. FEMS Microbiol Ecol. 2015;91: pubmed publisher
    ..Of the 35 phyla detected, 6 were dominant: Actinobacteria, Acidobacteria, Alphaproteobacteria, Deltaproteobacteria, Bacteroidetes and Planctomycetes...
  40. Abu Laban N, Tan B, Dao A, Foght J. Draft Genome Sequence of Uncultivated Toluene-Degrading Desulfobulbaceae Bacterium Tol-SR, Obtained by Stable Isotope Probing Using [13C6]Toluene. Genome Announc. 2015;3: pubmed publisher
    The draft genome of a member of the bacterial family Desulfobulbaceae (phylum Deltaproteobacteria) was assembled from the metagenome of a sulfidogenic [(13)C6]toluene-degrading enrichment culture...
  41. Hernández M, Dumont M, Yuan Q, Conrad R. Different bacterial populations associated with the roots and rhizosphere of rice incorporate plant-derived carbon. Appl Environ Microbiol. 2015;81:2244-53 pubmed publisher
    ..These OTUs were affiliated with the Alphaproteobacteria, Betaproteobacteria, and Deltaproteobacteria classes of Proteobacteria and the "Spartobacteria" and Opitutae classes of Verrucomicrobia...
  42. Koval S, Williams H, Stine O. Reclassification of Bacteriovorax marinus as Halobacteriovorax marinus gen. nov., comb. nov. and Bacteriovorax litoralis as Halobacteriovorax litoralis comb. nov.; description of Halobacteriovoraceae fam. nov. in the class Deltaproteobacteria. Int J Syst Evol Microbiol. 2015;65:593-7 pubmed publisher
    ..Bacteriovorax stolpii is thus retained as the type species of Bacteriovorax and Halobacteriovorax marinus is the type species of Halobacteriovorax and of Halobacteriovoraceae fam. nov. ..
  43. Zou H, Lu X, Li T. Effect of side-stream phosphorus recovery on biological phosphorus removal performance investigated by chemical and microbial analyses in a novel BNR-IC process. Water Sci Technol. 2014;70:1441-7 pubmed publisher
    ..populations correspond to the 11 bands, they were generally classified into five different phyla or classes (Beta-, Gamma-, and Deltaproteobacteria, as well as Clostridia and Flavobacteria) based on the evolutionary tree analysis.
  44. Chang C, Wei C, Lin L, Tu T, Liao V. Humic acids enhance the microbially mediated release of sedimentary ferrous iron. Environ Sci Pollut Res Int. 2016;23:4176-84 pubmed publisher
    ..a microbial community analysis indicated that the predominant class was changed from Alphaproteobacteria to Deltaproteobacteria, and clearly increased populations of Geobacter sp., Paludibacter sp., and Methylophaga sp...
  45. Kurth D, Amadio A, Ordoñez O, Albarracín V, Gartner W, Farias M. Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis. Sci Rep. 2017;7:1024 pubmed publisher
    ..b>Deltaproteobacteria were involved both in sulfate reduction and nitrogen fixation...
  46. Sharon I, Kertesz M, Hug L, Pushkarev D, Blauwkamp T, Castelle C, et al. Accurate, multi-kb reads resolve complex populations and detect rare microorganisms. Genome Res. 2015;25:534-43 pubmed publisher
    ..data revealed multiple (probably dozens of) closely related species and strains from previously undescribed Deltaproteobacteria and Aminicenantes (candidate phylum OP8)...
  47. Skennerton C, Chourey K, Iyer R, Hettich R, Tyson G, Orphan V. Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea. MBio. 2017;8: pubmed publisher
    ..that these cytochromes appear to have been horizontally transferred from metal-respiring members of the Deltaproteobacteria such as Geobacter and may allow these syntrophic SRB to accept extracellular electrons in place ..
  48. Bravo A, Zopfi J, Buck M, Xu J, Bertilsson S, Schaefer J, et al. Geobacteraceae are important members of mercury-methylating microbial communities of sediments impacted by waste water releases. ISME J. 2018;12:802-812 pubmed publisher
    ..b>Deltaproteobacteria, notably Geobacteraceae, dominated the hgcA carrying communities, while sulfate reducers constituted only a ..
  49. Al Ashhab A, Gillor O, Herzberg M. Biofouling of reverse-osmosis membranes under different shear rates during tertiary wastewater desalination: microbial community composition. Water Res. 2014;67:86-95 pubmed publisher
    ..the biofilms were dominated by Alpha- and Gamma- Proteobacteria, and the latter biofilms also contained Deltaproteobacteria. Bacterial abundance on the RO membrane was higher at low and medium shear rates compared to the high shear ..
  50. Bazylinski D, Lefèvre C. Magnetotactic bacteria from extreme environments. Life (Basel). 2013;3:295-307 pubmed publisher
    ..Known cultured and uncultured MTB are phylogenetically associated with the Alpha-, Gamma- and Deltaproteobacteria classes of the phylum Proteobacteria, the Nitrospirae phylum and the candidate division OP3, part of the ..
  51. Lu X, Chen C, Zheng T, Chen J. Temporal-spatial variation of bacterial diversity in estuary sediments in the south of Zhejiang Province, China. Appl Microbiol Biotechnol. 2016;100:2817-28 pubmed publisher
    ..The most dominant class in the DA, DD, DF, DO, and XA sediments is Gammaproteobacteria. Deltaproteobacteria is the most dominant one in XD, XO, and XF. Circa 14...
  52. Celik A, Casey E, Hasar H. Degradation of oxytetracycline under autotrophic nitrifying conditions in a membrane aerated biofilm reactor and community fingerprinting. J Hazard Mater. 2018;356:26-33 pubmed publisher
    ..The biofilm community comprised of Bacteria environmental samples, b-proteobacteria, CFB group bacteria, g-proteobacteria, d-proteobacteria and a-proteobacteria. ..
  53. Amalfitano S, Del Bon A, Zoppini A, Ghergo S, Fazi S, Parrone D, et al. Groundwater geochemistry and microbial community structure in the aquifer transition from volcanic to alluvial areas. Water Res. 2014;65:384-94 pubmed publisher
    ..The microbial community structure was intimately associated with geochemical changes, thus it should be further considered in view of a better understanding of groundwater ecology and sustainable management strategies. ..
  54. Junghare M, Schink B. Desulfoprunum benzoelyticum gen. nov., sp. nov., a Gram-stain-negative, benzoate-degrading, sulfate-reducing bacterium isolated from a wastewater treatment plant. Int J Syst Evol Microbiol. 2015;65:77-84 pubmed publisher
    ..based on 16S rRNA gene sequences placed strain KoBa311(T) within the family Desulfobulbaceae in the class Deltaproteobacteria. Its closest related bacterial species on the basis of the distance matrix were Desulfobacterium ..
  55. Xiang Y, Wang Y, Zhang C, Shen H, Wang D. Water level fluctuations influence microbial communities and mercury methylation in soils in the Three Gorges Reservoir, China. J Environ Sci (China). 2018;68:206-217 pubmed publisher
    ..At the family level, those groups in Deltaproteobacteria and Methanomicrobia that might have many Hg methylators were also showed a higher relative abundance in ..
  56. Crossman L, Chen H, Cerdeño Tárraga A, Brooks K, Quail M, Pineiro S, et al. A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus. ISME J. 2013;7:148-60 pubmed publisher
    ..The results of this study advance understanding of both the similarities and differences between Bdellovibrio and Bacteriovorax and confirm the distant relationship between the two and their separation into different families. ..
  57. Devkota S, Chang E. Interactions between Diet, Bile Acid Metabolism, Gut Microbiota, and Inflammatory Bowel Diseases. Dig Dis. 2015;33:351-6 pubmed publisher
    ..the expansion of an immunogenic sulfite-reducing pathobiont, Bilophila wadsworthia, a member of the Deltaproteobacteria and minor component of the gut microbiome...
  58. Rui J, Li J, Wang S, An J, Liu W, Lin Q, et al. Responses of Bacterial Communities to Simulated Climate Changes in Alpine Meadow Soil of the Qinghai-Tibet Plateau. Appl Environ Microbiol. 2015;81:6070-7 pubmed publisher
    ..Gammaproteobacteria, and Actinobacteria and decreases in Acidobacteria, Betaproteobacteria, and Deltaproteobacteria, while cooling had opposite effects on bacterial communities (symmetric response)...
  59. Gugliandolo C, Michaud L, Lo Giudice A, Lentini V, Rochera C, Camacho A, et al. Prokaryotic Community in Lacustrine Sediments of Byers Peninsula (Livingston Island, Maritime Antarctica). Microb Ecol. 2016;71:387-400 pubmed publisher
    ..classes in lacustrine samples were dominated by Betaproteobacteria (followed by Alphaproteobacteria, Deltaproteobacteria, and Gammaproteobacteria), while in the estuarine sample, they were mainly related to Gammaproteobacteria (..
  60. Starke R, Keller A, Jehmlich N, Vogt C, Richnow H, Kleinsteuber S, et al. Pulsed (13)C2-Acetate Protein-SIP Unveils Epsilonproteobacteria as Dominant Acetate Utilizers in a Sulfate-Reducing Microbial Community Mineralizing Benzene. Microb Ecol. 2016;71:901-11 pubmed publisher
    ..to the genus Pelotomaculum was previously described to ferment benzene while various sulfate-reducing Deltaproteobacteria and a member of the Epsilonproteobacteria were supposed to utilize acetate and hydrogen as key metabolites ..
  61. Rojas P, Rodriguez N, de la Fuente V, Sánchez Mata D, Amils R, Sanz Martin J. Microbial diversity associated to the anaerobic sediments of a soda lake (Mono Lake, CA). Can J Microbiol. 2018;: pubmed publisher
    ..notable presence of <i>Rhodoplanes </i>and a high diversity of sulfate-reducing (SRB) <i>Deltaproteobacteria</i>, in accordance with the high sulfate-reducing activity detected in soda lakes...
  62. Bonilla J, Kurth D, Cid F, Ulacco J, Gil R, Villegas L. Prokaryotic and eukaryotic community structure affected by the presence of an acid mine drainage from an abandoned gold mine. Extremophiles. 2018;22:699-711 pubmed publisher
    ..were abundant in samples characterized by low pH values, while Nitrospirae, Chloroflexi, Deltaproteobacteria, Thaumarchaeota and Euryarchaeota were associated with high concentrations of heavy metals...
  63. Tiralerdpanich P, Sonthiphand P, Luepromchai E, Pinyakong O, Pokethitiyook P. Potential microbial consortium involved in the biodegradation of diesel, hexadecane and phenanthrene in mangrove sediment explored by metagenomics analysis. Mar Pollut Bull. 2018;133:595-605 pubmed publisher
    ..amplicon sequence analysis revealed that the major bacterial assemblages detected were Gammaproteobacteria, Deltaproteobacteria, Alphaproteobacteria...
  64. Acosta González A, Martirani Von Abercron S, Rosselló Móra R, Wittich R, Marqués S. The effect of oil spills on the bacterial diversity and catabolic function in coastal sediments: a case study on the Prestige oil spill. Environ Sci Pollut Res Int. 2015;22:15200-14 pubmed publisher
    ..dominated by the groups Sphingomonadaceae, Rhodobacteraceae and Chromatiales, whilst Gamma- and Deltaproteobacteria were more relevant in subtidal zones...
  65. Wang H, Qu Y, Li D, Zhou X, Feng Y. Evaluation of an integrated continuous stirred microbial electrochemical reactor: Wastewater treatment, energy recovery and microbial community. Bioresour Technol. 2015;195:89-95 pubmed publisher
    ..6 and 2.5 times higher than that of a continuous stirred tank reactor (CSTR). Larger amount of Deltaproteobacteria (5...
  66. Stoeck T, Frühe L, Forster D, Cordier T, Martins C, Pawlowski J. Environmental DNA metabarcoding of benthic bacterial communities indicates the benthic footprint of salmon aquaculture. Mar Pollut Bull. 2018;127:139-149 pubmed publisher
    ..b>Deltaproteobacteria were predominant in immediate vicinity of the salmon cages...
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    ..The relative abundance of Deltaproteobacteria in roots significantly increased overtime throughout the entire life cycle of rice, while that of ..
  68. Wang Z, Yang Y, Dai Y, Xie S. Anaerobic biodegradation of nonylphenol in river sediment under nitrate- or sulfate-reducing conditions and associated bacterial community. J Hazard Mater. 2015;286:306-14 pubmed publisher
    ..The proportion of Gammaproteobacteria, Deltaproteobacteria and Choloroflexi showed a marked increase in nitrate-reducing microcosm, while Gammaproteobacteria and ..
  69. Sun F, Zhang X, Zhang Q, Liu F, Zhang J, Gong J. Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling. Appl Environ Microbiol. 2015;81:6901-14 pubmed publisher
    ..bacterial community structure was not significantly different between these two niches, Desulfococcus (Deltaproteobacteria) and Anaerolineae (Chloroflexi) presented with much higher proportions in the vegetated sediments, and ..
  70. Mukherjee S, Brothers K, Shanks R, Kadouri D. Visualizing Bdellovibrio bacteriovorus by Using the tdTomato Fluorescent Protein. Appl Environ Microbiol. 2015;82:1653-1661 pubmed publisher
    Bdellovibrio bacteriovorus is a Gram-negative bacterium that belongs to the delta subgroup of proteobacteria and is characterized by a predatory life cycle...
  71. Guan Y, Hikmawan T, Antunes A, Ngugi D, Stingl U. Diversity of methanogens and sulfate-reducing bacteria in the interfaces of five deep-sea anoxic brines of the Red Sea. Res Microbiol. 2015;166:688-99 pubmed publisher
    ..Bacteria predominated over Archaea in most locations, the majority of which were affiliated with Deltaproteobacteria, while Thaumarchaeota were the most prevalent Archaea in all sampled locations...
  72. Breidenbach B, Blaser M, Klose M, Conrad R. Crop rotation of flooded rice with upland maize impacts the resident and active methanogenic microbial community. Environ Microbiol. 2016;18:2868-85 pubmed publisher
    ..enriched in the rotational fields, whereas members of anaerobic Chloroflexi and sulfate-reducing members of Deltaproteobacteria were found in higher abundance in the rice fields...
  73. Badalamenti J, Krajmalnik Brown R, Torres C, Bond D. Genomes of Geoalkalibacter ferrihydriticus Z-0531T and Geoalkalibacter subterraneus Red1T, Two Haloalkaliphilic Metal-Reducing Deltaproteobacteria. Genome Announc. 2015;3: pubmed publisher
    We sequenced and annotated genomes of two haloalkaliphilic Deltaproteobacteria, Geoalkalibacter ferrihydriticus Z-0531(T) (DSM 17813) and Geoalkalibacter subterraneus Red1(T) (DSM 23483)...
  74. Miran W, Jang J, Nawaz M, Shahzad A, Lee D. Sulfate-reducing mixed communities with the ability to generate bioelectricity and degrade textile diazo dye in microbial fuel cells. J Hazard Mater. 2018;352:70-79 pubmed publisher
    ..Illumina Miseq technology for bacterial community analysis showed that Proteobacteria (89.4%), Deltaproteobacteria (52.7%), and Desulfovibrio (48...
  75. Andreote F, Jiménez D, Chaves D, Dias A, Luvizotto D, Dini Andreote F, et al. The microbiome of Brazilian mangrove sediments as revealed by metagenomics. PLoS ONE. 2012;7:e38600 pubmed publisher
    ..The taxonomic approaches applied revealed the dominance of Deltaproteobacteria and Gammaproteobacteria in the samples...
  76. Militon C, Jézéquel R, Gilbert F, Corsellis Y, Sylvi L, Cravo Laureau C, et al. Dynamics of bacterial assemblages and removal of polycyclic aromatic hydrocarbons in oil-contaminated coastal marine sediments subjected to contrasted oxygen regimes. Environ Sci Pollut Res Int. 2015;22:15260-72 pubmed publisher
    ..and Labrenzia sp. and included an unidentified Deltaproteobacteria-irrespective of the oxygen regime-followed by the selection of late responders adapted to the oxygen regime...
  77. Mizuno C, Ghai R, Saghaï A, López García P, Rodriguez Valera F. Genomes of Abundant and Widespread Viruses from the Deep Ocean. MBio. 2016;7: pubmed publisher
    ..We also identified a number of putative proviruses from diverse taxa, including deltaproteobacteria, bacteroidetes, SAR11, and gammaproteobacteria...
  78. Zhang X, Hu B, Ren H, Zhang J. Composition and functional diversity of microbial community across a mangrove-inhabited mudflat as revealed by 16S rDNA gene sequences. Sci Total Environ. 2018;633:518-528 pubmed publisher
    ..Alphaproteobacteria displayed an increasing trend from low tidal to high tidal flat and vice versa for Deltaproteobacteria; Cyanobacteria and Thaumarchaeota were more dominant in the surface layer than the subsurface...
  79. Anupama V, Prajeesh P, Anju S, Priya P, Krishnakumar B. Diversity of bacteria, archaea and protozoa in a perchlorate treating bioreactor. Microbiol Res. 2015;177:8-14 pubmed publisher
    ..FISH analysis revealed the presence of alpha, beta, gamma and delta proteobacteria in the sludge, dominated by beta proteobacteria (68.7%)...
  80. Ikeda Ohtsubo W, Strassert J, Köhler T, Mikaelyan A, Gregor I, McHardy A, et al. 'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen. Environ Microbiol. 2016;18:2548-64 pubmed publisher
    ..It represents a novel, deep-branching clade of uncultured Deltaproteobacteria widely distributed in intestinal tracts of termites and cockroaches...
  81. Danso D, Schmeisser C, Chow J, Zimmermann W, Wei R, Leggewie C, et al. New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes. Appl Environ Microbiol. 2018;84: pubmed publisher
    ..and Bacteroidetes Within the Proteobacteria, the Betaproteobacteria, Deltaproteobacteria, and Gammaproteobacteria were the main hosts...
  82. Zhang B, Tian C, Liu Y, Hao L, Liu Y, Feng C, et al. Simultaneous microbial and electrochemical reductions of vanadium (V) with bioelectricity generation in microbial fuel cells. Bioresour Technol. 2015;179:91-7 pubmed publisher
    ..8±2.9%. Microbial community analysis revealed the emergence of the new species of Deltaproteobacteria and Bacteroidetes as well as the enhanced Spirochaetes mainly functioned in the anode...
  83. Lalonde I, Constant P. Identification of Unknown Carboxydovore Bacteria Dominant in Deciduous Forest Soil via Succession of Bacterial Communities, coxL Genotypes, and Carbon Monoxide Oxidation Activity in Soil Microcosms. Appl Environ Microbiol. 2016;82:1324-1333 pubmed publisher
    ..available coxL reference genome sequences, this unusual genotype was assigned to an unknown member of the Deltaproteobacteria, with the coxL sequence from Haliangium ochraceum being the sole and closest reference sequence...
  84. Nelson J, Sudarsan N, Phillips G, Stav S, Lünse C, McCown P, et al. Control of bacterial exoelectrogenesis by c-AMP-GMP. Proc Natl Acad Sci U S A. 2015;112:5389-94 pubmed publisher
    ..We have identified a superregulon of genes controlled by c-AMP-GMP in numerous Deltaproteobacteria, including Geobacter species that use extracellular insoluble metal oxides as terminal electron acceptors...
  85. Deng D, Weidhaas J, Lin L. Kinetics and microbial ecology of batch sulfidogenic bioreactors for co-treatment of municipal wastewater and acid mine drainage. J Hazard Mater. 2016;305:200-208 pubmed publisher
    ..The reported COD kinetics, SRB abundances and the phylogenetic profile provide insights into the co-treatment process and help identify the parameters of concerns for such technology development. ..
  86. Sorokin D, Abbas B, Geleijnse M, Kolganova T, Kleerebezem R, Van Loosdrecht M. Syntrophic associations from hypersaline soda lakes converting organic acids and alcohols to methane at extremely haloalkaline conditions. Environ Microbiol. 2016;18:3189-202 pubmed publisher
    ..while the propionate-oxidizer formed a novel lineage within the family Syntrophobacteraceae in the Deltaproteobacteria. The acetate-oxidizing syntroph was identified as 'Ca...
  87. Concheri G, Stevanato P, Zaccone C, Shotyk W, D Orazio V, Miano T, et al. Rapid peat accumulation favours the occurrence of both fen and bog microbial communities within a Mediterranean, free-floating peat island. Sci Rep. 2017;7:8511 pubmed publisher
    ..This study represents the first report describing the biotic assemblages of such a peculiar environment, and provides some insights into the possible mechanisms of its evolution. ..
  88. Ahasan M, Waltzek T, Huerlimann R, Ariel E. Comparative analysis of gut bacterial communities of green turtles (Chelonia mydas) pre-hospitalization and post-rehabilitation by high-throughput sequencing of bacterial 16S rRNA gene. Microbiol Res. 2018;207:91-99 pubmed publisher
    ..At a class level, Epsilonproteobacteria was significantly (P<0.05) associated with PH samples and Deltaproteobacteria predominated (P<0.05) in PR samples...
  89. Staley C, Sadowsky M. Regional Similarities and Consistent Patterns of Local Variation in Beach Sand Bacterial Communities throughout the Northern Hemisphere. Appl Environ Microbiol. 2016;82:2751-2762 pubmed publisher
    ..harbored greater abundances of Gamma proteobacteria and Planctomycetes, and those from Florida had more Delta proteobacteria and Firmicutes Marine beaches had significantly different phylogenetic community structures (P ≤ 0...
  90. Gilmour C, Bullock A, McBurney A, Podar M, Elias D. Robust Mercury Methylation across Diverse Methanogenic Archaea. MBio. 2018;9: pubmed publisher
    ..thiol impacts on bioavailability showed methanogens responding to Hg complexation in the same way as do Deltaproteobacteria The mercury methylation rates of several methanogens rival those of the better-studied Hg-methylating ..
  91. Rodriguez Mora M, Scranton M, Taylor G, Chistoserdov A. The dynamics of the bacterial diversity in the redox transition and anoxic zones of the Cariaco Basin assessed by parallel tag sequencing. FEMS Microbiol Ecol. 2015;91:fiv088 pubmed publisher
    ..1996), a group of uncultured bacteria hypothesized to be involved in metal reduction, and sulfate-reducing Deltaproteobacteria. Gammaproteobacteria, Deltaproteobacteria and Marine Group A make up 67-90% of all V6 amplicons sequenced ..
  92. Wang Z, Liu Q, Zhao L, Du Z, Chen G. Bradymonas sediminis gen. nov., sp. nov., isolated from coastal sediment, and description of Bradymonadaceae fam. nov. and Bradymonadales ord. nov. Int J Syst Evol Microbiol. 2015;65:1542-9 pubmed publisher
    ..on 16S rRNA gene sequences revealed that strain FA350(T) belongs to a novel bacterial order in the class Deltaproteobacteria , and the most closely related type strains belong to the order Desulfuromonadales , with 85.1-85...