Experts and Doctors on molecular sequence data in Baton Rouge, Louisiana, United States

Summary

Locale: Baton Rouge, Louisiana, United States
Topic: molecular sequence data

Top Publications

  1. Foster T, Alvarez X, Kousoulas K. Plasma membrane topology of syncytial domains of herpes simplex virus type 1 glycoprotein K (gK): the UL20 protein enables cell surface localization of gK but not gK-mediated cell-to-cell fusion. J Virol. 2003;77:499-510 pubmed
  2. Zhang X, Kousoulas K, Storz J. The hemagglutinin/esterase gene of human coronavirus strain OC43: phylogenetic relationships to bovine and murine coronaviruses and influenza C virus. Virology. 1992;186:318-23 pubmed
    ..Phylogenetic analysis suggests that the HE genes of coronaviruses and influenza C virus have a common ancestral origin, and that bovine coronaviruses and HCV-OC43 are closely related. ..
  3. Godeny E, Zeng L, Smith S, Brinton M. Molecular characterization of the 3' terminus of the simian hemorrhagic fever virus genome. J Virol. 1995;69:2679-83 pubmed
    ..In its virion morphology and size, genome structure and length, and replication strategy, SHFV is most similar to lactate dehydrogenase-elevating virus, equine arteritis virus, and porcine reproductive and respiratory syndrome virus. ..
  4. Salem A, Ray D, Hedges D, Jurka J, Batzer M. Analysis of the human Alu Ye lineage. BMC Evol Biol. 2005;5:18 pubmed
    ..A potential hotspot for Alu insertion in the Fer1L3 gene on chromosome 10 was also identified. ..
  5. Valverde R, Gutierrez D. Transmission of a dsRNA in bell pepper and evidence that it consists of the genome of an endornavirus. Virus Genes. 2007;35:399-403 pubmed
    ..Data presented indicate that the BP-dsRNA is the genome of a distinct species of the genus Endornavirus. ..
  6. Rainey F, Ferreira M, Nobre M, Ray K, Bagaley D, Earl A, et al. Deinococcus peraridilitoris sp. nov., isolated from a coastal desert. Int J Syst Evol Microbiol. 2007;57:1408-12 pubmed
    ..nov. is proposed. The type strain is KR-200(T) (=LMG 22246(T)=CIP 109416(T)). ..
  7. Kang K, Chung J, Kim J. Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites. Nucleic Acids Res. 2009;37:2003-13 pubmed publisher
    ..Individual ChIP experiments confirmed the in vivo binding of the YY1 and CTCF proteins to most of these newly discovered binding sites, demonstrating the feasibility and usefulness of ECMFinder. ..
  8. Higashiguchi D, Husseneder C, Grace J, Berestecky J. Pilibacter termitis gen. nov., sp. nov., a lactic acid bacterium from the hindgut of the Formosan subterranean termite (Coptotermes formosanus). Int J Syst Evol Microbiol. 2006;56:15-20 pubmed
    ..nov., sp. nov. The type strain is TI-1T (= ATCC BAA-1030T = CCUG 49613T). ..
  9. Xing J, Wang H, Zhang Y, Ray D, Tosi A, Disotell T, et al. A mobile element-based evolutionary history of guenons (tribe Cercopithecini). BMC Biol. 2007;5:5 pubmed
    ..SINEs are a class of non-autonomous mobile elements and are essentially homoplasy-free characters with known ancestral states, making them useful genetic markers for phylogenetic studies...

More Information

Publications147 found, 100 shown here

  1. Fossett N, Arbour Reily P, Kilroy G, McDaniel M, Mahmoud J, Tucker A, et al. Analysis of ENU-induced mutations at the Adh locus in Drosophila melanogaster. Mutat Res. 1990;231:73-85 pubmed
    ..7 of the 9 intragenic mutations were GC to AT transitions which resulted in 5 single amino acid substitutions, 1 premature translation termination codon, and 1 splice site mutation.(ABSTRACT TRUNCATED AT 400 WORDS) ..
  2. Grove A, Saavedra T. The role of surface-exposed lysines in wrapping DNA about the bacterial histone-like protein HU. Biochemistry. 2002;41:7597-603 pubmed
    ..We propose that Lys3 forms an internal saltbridge to Asp26 in HU homologues characterized by shorter binding sites and that its surface exposure, and hence a longer binding site, may correlate with absence of this aspartate. ..
  3. Pakhomova S, Bartlett S, Augustus A, Kuzuyama T, Newcomer M. Crystal structure of fosfomycin resistance kinase FomA from Streptomyces wedmorensis. J Biol Chem. 2008;283:28518-26 pubmed publisher
    ..The present work identifies the active site residues of FomA responsible for substrate binding and specificity and proposes their roles in catalysis. ..
  4. Ali M, Torian B, Vedeckis W. Identification of human, mouse, and rat retinoic acid receptor alpha using monoclonal antibodies. Biochem Biophys Res Commun. 1992;182:1032-9 pubmed
    ..These monoclonal antibodies also detected differing levels of RAR alpha in various rat tissues. These monoclonal antibodies will serve as powerful reagents to study the structure and regulation of the retinoic acid receptor protein. ..
  5. Wu M, Laine R. Sequence of the V. parahaemolyticus gene for cytoplasmic N, N'-diacetylchitobiase and homology with related enzymes. J Biochem. 1999;125:1086-93 pubmed
    ..This is consistent with its limited substrate specificity to small GlcNAc terminated oligosaccharides and its cytoplasmic rather than periplasmic localization. ..
  6. Noor M, Michalak P, Donze D. Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D. persimilis. Genetics. 2003;165:1823-30 pubmed
    ..pseudoobscura lineage and that its underexpression in sterile hybrid males may cause an overproduction of TRAP100 protein, possibly yielding deleterious effects. ..
  7. Petit C, Melancon J, Chouljenko V, Colgrove R, Farzan M, Knipe D, et al. Genetic analysis of the SARS-coronavirus spike glycoprotein functional domains involved in cell-surface expression and cell-to-cell fusion. Virology. 2005;341:215-30 pubmed
    ..This genetic analysis reveals that the SARS-CoV S glycoprotein contains extracellular domains that regulate cell fusion as well as distinct endodomains that function in intracellular transport, cell-surface expression, and cell fusion. ..
  8. Aboul ela F. Strategies for the design of RNA-binding small molecules. Future Med Chem. 2010;2:93-119 pubmed publisher
    ..While targeting of RNA for drug design is very challenging, continuing advances in our understanding of the principles of RNA-ligand interaction will be necessary to realize the full potential of this class of targets. ..
  9. Li S, Chakraborty N, Borcar A, Menze M, Toner M, Hand S. Late embryogenesis abundant proteins protect human hepatoma cells during acute desiccation. Proc Natl Acad Sci U S A. 2012;109:20859-64 pubmed publisher
    ..LEA proteins dramatically enhance desiccation tolerance in mammalian cells and offer the opportunity for engineering biostability in the dried state. ..
  10. Yang W, Mason C, Pollock S, Lavezzi T, Moroney J, Moore T. Membrane lipid biosynthesis in Chlamydomonas reinhardtii: expression and characterization of CTP:phosphoethanolamine cytidylyltransferase. Biochem J. 2004;382:51-7 pubmed
    ..reinhardtii cells was observed during the cell cycle, increasing during the dark and then decreasing during the light period, while the mRNA level did not alter, providing evidence for post-translational regulation. ..
  11. Moe W, Yan J, Nobre M, da Costa M, Rainey F. Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater. Int J Syst Evol Microbiol. 2009;59:2692-7 pubmed publisher
    ..nov., sp. nov. is proposed. The type strain of Dehalogenimonas lykanthroporepellens is BL-DC-9(T) (=ATCC BAA-1523(T) =JCM 15061(T))...
  12. Fossett N, Byrne B, Tucker A, Arbour Reily P, Chang S, Lee W. Mutation spectrum of 2-chloroethyl methanesulfonate in Drosophila melanogaster premeiotic germ cells. Mutat Res. 1995;331:213-24 pubmed
    ..Consequently, 2ClEMS, EDC and EDB may induce a specific mutation in premeiotic germ cells. ..
  13. Vandergrifft E, Horohov D. Molecular cloning and expression of equine interleukin 2. Vet Immunol Immunopathol. 1993;39:395-406 pubmed
    ..Specific substitutions in those regions associated with p55 and p75 binding appear to account for this species-specifity. ..
  14. Jambunathan N, Martinez A, Robert E, Agochukwu N, Ibos M, Dugas S, et al. Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary. Genetics. 2005;171:913-22 pubmed
    ..Our results suggest that multiple bromodomain proteins are involved in restricting the propagation of heterochromatin at HMR. ..
  15. Ray D, Batzer M. Tracking Alu evolution in New World primates. BMC Evol Biol. 2005;5:51 pubmed
    ..The characterization of these three new Alu subfamilies not only increases our understanding of Alu sequence evolution in primates, but also opens the door to the application of these genetic markers outside the hominid lineage. ..
  16. Xue Q, Itoh N, Schey K, Cooper R, La Peyre J. Evidence indicating the existence of a novel family of serine protease inhibitors that may be involved in marine invertebrate immunity. Fish Shellfish Immunol. 2009;27:250-9 pubmed publisher
  17. Sunyakumthorn P, Petchampai N, Kearney M, Sonenshine D, Macaluso K. Molecular characterization and tissue-specific gene expression of Dermacentor variabilis ?-catenin in response to rickettsial infection. Insect Mol Biol. 2012;21:197-204 pubmed publisher
    ..Studying tick-derived molecules associated with rickettsial infection will provide a better understanding of the transmission dynamics of tick-borne rickettsial diseases. ..
  18. McLain A, Meyer T, Faulk C, Herke S, Oldenburg J, Bourgeois M, et al. An alu-based phylogeny of lemurs (infraorder: Lemuriformes). PLoS ONE. 2012;7:e44035 pubmed publisher
    ..Our results also support the monophyly of the Lemuridae. Within Lemuridae we place Lemur and Hapalemur together to the exclusion of Eulemur and Varecia, with Varecia the sister lineage to the other three genera. ..
  19. Williams D, Pittman T, Gillis T, Matsuoka M, Kashiwabara Y. Simultaneous detection of Mycobacterium leprae and its susceptibility to dapsone using DNA heteroduplex analysis. J Clin Microbiol. 2001;39:2083-8 pubmed
    ..The assay should prove useful for drug resistance surveillance in leprosy control programs when combined with similar molecular tests developed for other drug resistance markers. ..
  20. McGovern T, Hellberg M. Cryptic species, cryptic endosymbionts, and geographical variation in chemical defences in the bryozoan Bugula neritina. Mol Ecol. 2003;12:1207-15 pubmed
    ..The ability to identify the cryptic Bugula species and their differing relationships with bacterial associates provides an example of the important role molecular techniques may play in addressing ecological questions...
  21. Pakhomova S, Rife C, Armstrong R, Newcomer M. Structure of fosfomycin resistance protein FosA from transposon Tn2921. Protein Sci. 2004;13:1260-5 pubmed
    ..However, the absence of K+, which has been shown to enhance enzymatic activity, appears to contribute to conformational heterogeneity in the K(+)-binding loops. ..
  22. Oldham M, Brash A, Newcomer M. Insights from the X-ray crystal structure of coral 8R-lipoxygenase: calcium activation via a C2-like domain and a structural basis of product chirality. J Biol Chem. 2005;280:39545-52 pubmed
    ..Moreover, a structural basis for R chiral specificity is also revealed; creation of a small oxygen pocket next to Gly(428) (Ala in all S-LOX isozymes) promoted C-8 oxygenation with R chirality on the activated fatty acid substrate. ..
  23. Godeny E, de Vries A, Wang X, Smith S, de Groot R. Identification of the leader-body junctions for the viral subgenomic mRNAs and organization of the simian hemorrhagic fever virus genome: evidence for gene duplication during arterivirus evolution. J Virol. 1998;72:862-7 pubmed
    ..Evidence which suggests that SHFV ORFs 4 through 6 are related to ORFs 2a through 3 and may have resulted from a recombination event during virus evolution is presented. ..
  24. Chang S, Kemp R. Role of Ser530, Arg292, and His662 in the allosteric behavior of rabbit muscle phosphofructokinase. Biochem Biophys Res Commun. 2002;290:670-5 pubmed
    ..Limited activation was observed for mutant R292A. A model illustrating the sites for recognition of Fru-2,6-P(2) in rabbit muscle PFK as well as the mechanism of allosteric activation is proposed. ..
  25. Hansel W, Leuschner C, Gawronska B, Enright F. Targeted destruction of prostate cancer cells and xenografts by lytic peptide-betaLH conjugates. Reprod Biol. 2001;1:20-32 pubmed
    ..No changes in body weight or histological abnormalities were found in any of the organs examined, except the testes. ..
  26. Bilder P, Ding H, Newcomer M. Crystal structure of the ancient, Fe-S scaffold IscA reveals a novel protein fold. Biochemistry. 2004;43:133-9 pubmed
    ..In addition, the crystal packing reveals a helical assembly that is constructed from two possible tetrameric oligomers of IscA. ..
  27. Wilkinson S, Grove A. HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans. J Biol Chem. 2004;279:51442-50 pubmed
    ..radiodurans. Since uric acid is a scavenger of reactive oxygen species, we hypothesize that HucR is a participant in the intrinsic resistance of D. radiodurans to high levels of oxidative stress. ..
  28. Bae H, Rash B, Rainey F, Nobre M, Tiago I, da Costa M, et al. Description of Azospira restricta sp. nov., a nitrogen-fixing bacterium isolated from groundwater. Int J Syst Evol Microbiol. 2007;57:1521-6 pubmed
    ..nov. The description of the genus Azospira is emended to include the characteristics of this novel species. The type strain of Azospira restricta is SUA2(T) (=NRRL B-41660(T)=DSM 18626(T)=LMG 23819(T)). ..
  29. Argyropoulos G, Stütz A, Ilnytska O, Rice T, Teran Garcia M, Rao D, et al. KIF5B gene sequence variation and response of cardiac stroke volume to regular exercise. Physiol Genomics. 2009;36:79-88 pubmed publisher
    ..Furthermore, training-induced changes in submaximal exercise stroke volume may be due to mitochondrial function and variation in KIF5B expression as determined by functional SNPs in its promoter. ..
  30. Soto E, Hawke J, Fernandez D, Morales J. Francisella sp., an emerging pathogen of tilapia, Oreochromis niloticus (L.), in Costa Rica. J Fish Dis. 2009;32:713-22 pubmed publisher
    ..isolated from fish, and more than 97% identity to the human pathogen Francisella tularensis. Koch's postulates were fulfilled after experimental intraperitoneal and gill exposure challenges...
  31. Xie Y, Chen Z, Brown R, Bhatnagar D. Expression and functional characterization of two pathogenesis-related protein 10 genes from Zea mays. J Plant Physiol. 2010;167:121-30 pubmed publisher
    ..Also, ZmPR10.1 showed a stronger inhibition against bacterium Pseudomonas syringae pv. tomato DC3000 in vivo and fungus A. flavus in vitro than ZmPR10, indicating that ZmPR10.1 may also play an important role in host plant defense...
  32. Pornwiroon W, Bourchookarn A, Paddock C, Macaluso K. Proteomic analysis of Rickettsia parkeri strain portsmouth. Infect Immun. 2009;77:5262-71 pubmed publisher
    ..The proteome map with corresponding cell surface protein analysis and antigen detection will facilitate a better understanding of the mechanisms of rickettsial pathogenesis...
  33. Liang F, Xu Q, Sikdar R, Xiao Y, Cox J, Doerrler W. BB0250 of Borrelia burgdorferi is a conserved and essential inner membrane protein required for cell division. J Bacteriol. 2010;192:6105-15 pubmed publisher
    ..These results demonstrate a strong conservation of function of the dedA gene family across diverse species of Gram-negative bacteria and a requirement for this protein family for normal membrane lipid composition and cell division. ..
  34. Smith C, Johnson C, King G. Assessment of polyaromatic hydrocarbon degradation by potentially pathogenic environmental Vibrio parahaemolyticus isolates from coastal Louisiana, USA. Mar Pollut Bull. 2012;64:138-143 pubmed publisher
    ..The use of PAH by V. parahaemolyticus is unusual, and an increase in human health risks due to stimulation of V. parahaemolyticus growth by oil-derived PAH under in situ conditions appears unlikely. ..
  35. Rui Z, Ye M, Wang S, Fujikawa K, Akerele B, Aung M, et al. Insights into a divergent phenazine biosynthetic pathway governed by a plasmid-born esmeraldin gene cluster. Chem Biol. 2012;19:1116-25 pubmed publisher
    ..Two transcriptional regulators, EsmT1 and EsmT2, are required for esmeraldin production...
  36. Karan R, Subudhi P. A stress inducible SUMO conjugating enzyme gene (SaSce9) from a grass halophyte Spartina alterniflora enhances salinity and drought stress tolerance in Arabidopsis. BMC Plant Biol. 2012;12:187 pubmed publisher
    ..In addition, this study demonstrates the potential of the halophyte grass S. alterniflora as a reservoir of abiotic stress related genes for crop improvement. ..
  37. Sabanadzovic S, Wintermantel W, Valverde R, McCreight J, Aboughanem Sabanadzovic N. Cucumis melo endornavirus: Genome organization, host range and co-divergence with the host. Virus Res. 2016;214:49-58 pubmed publisher
    ..Such diverse host range is unreported for known endornaviruses and suggests a long history of CmEV association with cucurbits predating their speciation. ..
  38. Williams D, Spring L, Harris E, Roche P, Gillis T. Dihydropteroate synthase of Mycobacterium leprae and dapsone resistance. Antimicrob Agents Chemother. 2000;44:1530-7 pubmed
    ..leprae strains were identical, indicating that this gene does not encode a functional DHPS and is not involved in dapsone resistance in M. leprae. ..
  39. Chouljenko V, Lin X, Storz J, Kousoulas K, Gorbalenya A. Comparison of genomic and predicted amino acid sequences of respiratory and enteric bovine coronaviruses isolated from the same animal with fatal shipping pneumonia. J Gen Virol. 2001;82:2927-33 pubmed publisher
    ..Single amino acid changes within p195/p210 as well as within the S glycoprotein might contribute to the different phenotypes of the BCoV isolates...
  40. Callegan R, Nobre M, McTernan P, Battista J, Navarro González R, McKay C, et al. Description of four novel psychrophilic, ionizing radiation-sensitive Deinococcus species from alpine environments. Int J Syst Evol Microbiol. 2008;58:1252-8 pubmed publisher
    ..nov.), ME-04-01-32T (=LMG 24022T=NRRL B-41947T; Deinococcus altitudinis sp. nov.) and ME-04-04-52T (=LMG 24283T=NRRL B-41948T; Deinococcus alpinitundrae sp. nov.) represent the type strains of four novel species of the genus Deinococcus...
  41. Koza R, Rogers P, Kozak L. Inter-individual variation of dietary fat-induced mesoderm specific transcript in adipose tissue within inbred mice is not caused by altered promoter methylation. Epigenetics. 2009;4:512-8 pubmed
    ..These data suggest that mechanisms independent of the CpG methylation status of the Mest promoter must underlie the control of its expression during adipose tissue expansion. ..
  42. Yang Y, Zhu Y, Ottea J, Husseneder C, Leonard B, Abel C, et al. Down regulation of a gene for cadherin, but not alkaline phosphatase, associated with Cry1Ab resistance in the sugarcane borer Diatraea saccharalis. PLoS ONE. 2011;6:e25783 pubmed publisher
    ..Down-regulation of DsCAD1 expression by RNAi was functionally correlated with a decrease in Cry1Ab susceptibility. These results suggest that down-regulation of DsCAD1 is associated with resistance to Cry1Ab in D. saccharalis. ..
  43. Valdez B, Chen Z, Sosa M, Younathan E, Chang S. Human 6-phosphofructo-1-kinase gene has an additional intron upstream of start codon. Gene. 1989;76:167-9 pubmed
    ..The available sequence of the two cDNAs shows 256 nt differences. Surprisingly, 71% of these sites are A's and T's in the human cDNA and C's and G's in the rabbit gene. ..
  44. Bracey M, Bartlett S. Sequence of a cDNA encoding carbonic anhydrase from barley. Plant Physiol. 1995;108:433-4 pubmed
  45. Vandergrifft E, Swiderski C, Horohov D. Molecular cloning and sequencing of equine interleukin 4. Vet Immunol Immunopathol. 1994;40:379-84 pubmed
    ..The cDNA was amplified from mitogen-stimulated equine peripheral blood mononuclear cells (PBMC). The cloned PCR product shares extensive homology ith IL-4 sequences from other species...
  46. Chen Z, Jiang J, Lin Z, Lee W, Baker M, Chang S. Site-specific mutagenesis of Drosophila alcohol dehydrogenase: evidence for involvement of tyrosine-152 and lysine-156 in catalysis. Biochemistry. 1993;32:3342-6 pubmed
    ..These results suggest that both tyrosine-152 and lysine-156 have essential roles in catalysis by Drosophila ADH. ..
  47. Swiderski C, Sobol G, Lunn D, Horohov D. Molecular cloning, sequencing, and expression of equine interleukin-6. Vet Immunol Immunopathol. 2000;77:213-20 pubmed
    ..Treatment of B9 cells with an anti-IL-6 receptor antibody ablated the response to the recombinant equine IL-6. ..
  48. Rim J, Kozak L. Regulatory motifs for CREB-binding protein and Nfe2l2 transcription factors in the upstream enhancer of the mitochondrial uncoupling protein 1 gene. J Biol Chem. 2002;277:34589-600 pubmed
    ..Co-transfections with an Nfe2l2 expression vector and a luciferase reporter construct of the Ucp1 enhancer region provide additional evidence that Nfe2l2 is involved in the regulation of Ucp1 by cAMP-mediated signaling. ..
  49. Pakhomova S, Luka Z, Grohmann S, Wagner C, Newcomer M. Glycine N-methyltransferases: a comparison of the crystal structures and kinetic properties of recombinant human, mouse and rat enzymes. Proteins. 2004;57:331-7 pubmed
    ..There is an increase in kcat when going from rat to mouse to human, suggesting a correlation with the increased flexibility of some structural elements of the respective enzymes. ..
  50. Xing J, Wang H, Belancio V, Cordaux R, Deininger P, Batzer M. Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc Natl Acad Sci U S A. 2006;103:17608-13 pubmed publisher
    ..The duplication of entire genes and the creation of previously undescribed gene families through retrotransposon-mediated sequence transduction represent an important mechanism by which mobile elements impact their host genomes...
  51. Chen X, Ruggiero C, Li S. Yeast Rpb9 plays an important role in ubiquitylation and degradation of Rpb1 in response to UV-induced DNA damage. Mol Cell Biol. 2007;27:4617-25 pubmed
    ..Furthermore, we show that Rpb1, rather than the whole Pol II complex, is degraded in response to UV radiation and that the degradation is primarily mediated by the 26S proteasome. ..
  52. Plant K, Thune R. Genomic organisation of the channel catfish Mx1 gene and characterisation of multiple channel catfish Mx gene promoters. Fish Shellfish Immunol. 2008;24:575-83 pubmed publisher
    ..These results suggest that only channel catfish Mx1 is involved in the type I interferon pathway and that the presence of an ISRE in a regulatory region is not necessarily indicative of a role in the type I interferon response...
  53. Yang Y, Zhu Y, Ottea J, Husseneder C, Leonard B, Abel C, et al. Molecular characterization and RNA interference of three midgut aminopeptidase N isozymes from Bacillus thuringiensis-susceptible and -resistant strains of sugarcane borer, Diatraea saccharalis. Insect Biochem Mol Biol. 2010;40:592-603 pubmed publisher
    ..saccharalis in vivo by RNAi resulted in a decrease in Cry1Ab susceptibility. Our results showed that reduction in expression of the three APNs is functionally associated with the Cry1Ab resistance in D. saccharalis. ..
  54. Cavalier M, Kim S, Neau D, Lee Y. Molecular basis of the fructose-2,6-bisphosphatase reaction of PFKFB3: transition state and the C-terminal function. Proteins. 2012;80:1143-53 pubmed publisher
    ..These findings provide a new insight into the understanding of the phosphoryl transfer reaction. ..
  55. Karan R, Subudhi P. Overexpression of a nascent polypeptide associated complex gene (Sa?NAC) of Spartina alterniflora improves tolerance to salinity and drought in transgenic Arabidopsis. Biochem Biophys Res Commun. 2012;424:747-52 pubmed publisher
  56. Bae H, Moe W, Yan J, Tiago I, da Costa M, Rainey F. Propionicicella superfundia gen. nov., sp. nov., a chlorosolvent-tolerant propionate-forming, facultative anaerobic bacterium isolated from contaminated groundwater. Syst Appl Microbiol. 2006;29:404-13 pubmed
    ..nov., sp. nov. is proposed. The type strain of Propionicicella superfundia is BL-10(T) (=ATCC BAA-1218(T), =LMG 23096(T)). ..
  57. Losso J. The biochemical and functional food properties of the bowman-birk inhibitor. Crit Rev Food Sci Nutr. 2008;48:94-118 pubmed publisher
  58. Harper J, Sussman M, Schaller G, Putnam Evans C, Charbonneau H, Harmon A. A calcium-dependent protein kinase with a regulatory domain similar to calmodulin. Science. 1991;252:951-4 pubmed
    ..The predicted structure of this kinase explains its direct regulation via calcium binding and establishes it as a prototype for a new family of calcium-regulated protein kinases...
  59. Thune R, Fernandez D, Hawke J, Miller R. Construction of a safe, stable, efficacious vaccine against Photobacterium damselae ssp. piscicida. Dis Aquat Organ. 2003;57:51-8 pubmed
    ..Further, LSU-P2 was demonstrated to be avirulent in hybrid striped bass and to provide significant protection against disease following challenge with the wild-type strain...
  60. Foster T, Melancon J, Olivier T, Kousoulas K. Herpes simplex virus type 1 glycoprotein K and the UL20 protein are interdependent for intracellular trafficking and trans-Golgi network localization. J Virol. 2004;78:13262-77 pubmed
    ..These results are consistent with the hypothesis that gK and UL20p directly interact and that this interaction facilitates their TGN localization, an important prerequisite for cytoplasmic virion envelopment and egress. ..
  61. Zhang Y, Shih D. Isolation of an osmotin-like protein gene from strawberry and analysis of the response of this gene to abiotic stresses. J Plant Physiol. 2007;164:68-77 pubmed
  62. Pornwiroon W, Pourciau S, Foil L, Macaluso K. Rickettsia felis from cat fleas: isolation and culture in a tick-derived cell line. Appl Environ Microbiol. 2006;72:5589-95 pubmed
    ..felis. Establishment of R. felis (LSU) in a tick-derived cell line provides an alternative and promising system for the expansion of studies investigating the interactions between R. felis and arthropod hosts...
  63. Ma Y, Pollock S, Xiao Y, Cunnusamy K, Moroney J. Identification of a novel gene, CIA6, required for normal pyrenoid formation in Chlamydomonas reinhardtii. Plant Physiol. 2011;156:884-96 pubmed publisher
    ..These results indicated that CIA6 is required for the formation of the pyrenoid and further supported the notion that the pyrenoid is required for a functional CCM in C. reinhardtii. ..
  64. Zheng L, Wang X, Braymer H. Purification and N-terminal amino acid sequences of two polypeptides encoded by the mcrB gene from Escherichia coli K-12. Gene. 1992;112:97-100 pubmed
    ..J. Bacteriol. 171 (1989b) 1974-1981]. The 33-kDa protein totally overlaps the C-terminal part of the 51-kDa protein. ..
  65. Han K, Lee J, Meyer T, Wang J, Sen S, Srikanta D, et al. Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genet. 2007;3:1939-49 pubmed
  66. Rosby R, Cui Z, Rogers E, deLivron M, Robinson V, DiMario P. Knockdown of the Drosophila GTPase nucleostemin 1 impairs large ribosomal subunit biogenesis, cell growth, and midgut precursor cell maintenance. Mol Biol Cell. 2009;20:4424-34 pubmed publisher
    ..We interpret the appearance of these structures as indicators of cell stress response. ..
  67. Williams D, Spring L, Collins L, Miller L, Heifets L, Gangadharam P, et al. Contribution of rpoB mutations to development of rifamycin cross-resistance in Mycobacterium tuberculosis. Antimicrob Agents Chemother. 1998;42:1853-7 pubmed
  68. Wilkinson S, Grove A. Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins. Curr Issues Mol Biol. 2006;8:51-62 pubmed
    ..However, recent biochemical and biophysical data on MarR homologs have begun to resolve the mechanisms by which these proteins mediate ligand-responsive transcriptional control. ..
  69. Li S, Ding B, Chen R, Ruggiero C, Chen X. Evidence that the transcription elongation function of Rpb9 is involved in transcription-coupled DNA repair in Saccharomyces cerevisiae. Mol Cell Biol. 2006;26:9430-41 pubmed
    ..Our data suggest that the transcription elongation function of Rpb9 is involved in TCR. ..
  70. Hellberg M, Dennis A, Arbour Reily P, Aagaard J, Swanson W. The Tegula tango: a coevolutionary dance of interacting, positively selected sperm and egg proteins. Evolution. 2012;66:1681-94 pubmed publisher
  71. Ramsay T, Yan X, Morrison C. The obesity gene in swine: sequence and expression of porcine leptin. J Anim Sci. 1998;76:484-90 pubmed
    ..These data indicate that leptin is expressed in pigs, the expressed protein is secreted into the bloodstream, and obese swine express higher levels of leptin mRNA and protein than nonobese swine at similar body weight. ..
  72. Waggener J, DiMario P. Two splice variants of Nopp140 in Drosophila melanogaster. Mol Biol Cell. 2002;13:362-81 pubmed
    ..Conversely, we see no unusual accumulation of coilin in cells expressing DmNopp140-RGG. ..
  73. Hellberg M. No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation. BMC Evol Biol. 2006;6:24 pubmed
    ..mtDNA substitution rates switch from slow to fast abruptly and unidirectionally. This switch may stem from the loss of just one or a few mitochondrion-specific DNA repair or replication genes. ..
  74. Xue Q, Itoh N, Schey K, Li Y, Cooper R, La Peyre J. A new lysozyme from the eastern oyster (Crassostrea virginica) indicates adaptive evolution of i-type lysozymes. Cell Mol Life Sci. 2007;64:82-95 pubmed publisher
    ..While showing that a bivalve mollusk employs different lysozymes for different functions, findings in this study suggest adaptive evolution of i type lysozymes for nutrition...
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