Experts and Doctors on sequence alignment in Mississippi, United States
Locale: Mississippi, United States
Topic: sequence alignment
Hanson L, Rudis M, Vasquez Lee M, Montgomery R. A broadly applicable method to characterize large DNA viruses and adenoviruses based on the DNA polymerase gene. Virol J. 2006;3:28 pubmed
..Furthermore, we demonstrated that obtaining genetic information on routine diagnostic samples has great potential for revealing new virus strains and suggesting the presence of new species. ..
Small B, Nonneman D. Sequence and expression of a cDNA encoding both pituitary adenylate cyclase activating polypeptide and growth hormone-releasing hormone-like peptide in channel catfish (Ictalurus punctatus). Gen Comp Endocrinol. 2001;122:354-63 pubmed publisher
..By characterizing the GHRHLP/PACAP gene and its distribution in channel catfish, we have developed essential tools to investigate the roles of these peptides in the regulation of catfish growth...
Waldbieser G, Bilodeau A, Nonneman D. Complete sequence and characterization of the channel catfish mitochondrial genome. DNA Seq. 2003;14:265-77 pubmed
..Sequence analysis revealed clustering of haplotypes within commercial farms and the USDA103 research line, but D-loop haplotypes were not sufficient to discriminate the USDA103 fish from commercial catfish. ..
Vidal G, Scheffler B, Michel A, D Surney S. Genomic and phylogenic comparisons of the alpha-globin and beta-globin intergenic sequences between zebra fish (Danio rerio) and six closely related Cyprinindae species. DNA Cell Biol. 2004;23:325-34 pubmed
..This may represent an ancestral configuration prior to transposition of the alpha globin and beta-globin genes families to nonsynteny. ..
Dandass Y, Burgess S, Lawrence M, Bridges S. Accelerating string set matching in FPGA hardware for bioinformatics research. BMC Bioinformatics. 2008;9:197 pubmed publisher
..Furthermore, the FPGA implementation executing at 100 MHz is nearly 20 times faster than an implementation of the traditional Aho-Corasick algorithm executing on a 2.67 GHz workstation. ..
Griffin M, Pote L, Wise D, Greenway T, Mauel M, Camus A. A novel Henneguya species from channel catfish described by morphological, histological, and molecular characterization. J Aquat Anim Health. 2008;20:127-35 pubmed publisher
..gurlei, H. ictaluri, and H. exilis. The unique host record, spore morphology, and novel genetic sequence derived from this isolate lead us to propose this isolate as a novel species, H. sutherlandi...
Jankun Kelly T, Lindeman A, Bridges S. Exploratory visual analysis of conserved domains on multiple sequence alignments. BMC Bioinformatics. 2009;10 Suppl 11:S7 pubmed publisher
..The MSAVis software, written in Python and using BioPython and OpenGL, can be found at http://agbase.msstate.edu/tools/MSAVis.html. ..