Experts and Doctors on molecular sequence data in Mississippi, United States


Locale: Mississippi, United States
Topic: molecular sequence data

Top Publications

  1. Smith L, Hasper H, Breukink E, Novak J, Cerkasov J, Hillman J, et al. Elucidation of the antimicrobial mechanism of mutacin 1140. Biochemistry. 2008;47:3308-14 pubmed publisher
    ..Mutacin 1140 did exhibit a membrane disruptive function in another commonly used artificial bacterial membrane system, and its disruptive activity was enhanced by increasing amounts of anionic phospholipids. ..
  2. Tekedar H, Karsi A, Gillaspy A, Dyer D, Benton N, Zaitshik J, et al. Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512. J Bacteriol. 2012;194:2763-4 pubmed publisher
    ..Flavobacterium columnare is a Gram-negative, rod-shaped, motile, and highly prevalent fish pathogen causing columnaris disease in freshwater fish worldwide. Here, we present the complete genome sequence of F. columnare strain ATCC 49512. ..
  3. Waldbieser G, Bilodeau A, Nonneman D. Complete sequence and characterization of the channel catfish mitochondrial genome. DNA Seq. 2003;14:265-77 pubmed
    ..Sequence analysis revealed clustering of haplotypes within commercial farms and the USDA103 research line, but D-loop haplotypes were not sufficient to discriminate the USDA103 fish from commercial catfish. ..
  4. Ali Z, Khan S, Ferreira D, Khan I. Podocarpaside, a triterpenoid possessing a new backbone from Actaea podocarpa. Org Lett. 2006;8:5529-32 pubmed
    ..Podocarpaside belongs to a new class of triterpenoids, for which the name "ranunculane" is proposed. Compound 1 possesses anticomplement activity. [structure: see text]...
  5. Griffin M, Pote L, Wise D, Greenway T, Mauel M, Camus A. A novel Henneguya species from channel catfish described by morphological, histological, and molecular characterization. J Aquat Anim Health. 2008;20:127-35 pubmed publisher
    ..gurlei, H. ictaluri, and H. exilis. The unique host record, spore morphology, and novel genetic sequence derived from this isolate lead us to propose this isolate as a novel species, H. sutherlandi...
  6. Paul D, Austin F, Arick T, Bridges S, Burgess S, Dandass Y, et al. Genome sequence of the solvent-producing bacterium Clostridium carboxidivorans strain P7T. J Bacteriol. 2010;192:5554-5 pubmed publisher
    ..The C. carboxidivorans genome contains all the genes for the carbonyl branch of the Wood-Ljungdahl pathway for CO(2) fixation, and it encodes enzymes for conversion of acetyl coenzyme A into butanol and butyrate. ..
  7. Steele C, Donaldson J, Paul D, Banes M, Arick T, Bridges S, et al. Genome sequence of lineage III Listeria monocytogenes strain HCC23. J Bacteriol. 2011;193:3679-80 pubmed publisher
    ..Serotypes within lineage III (4a and 4c) are commonly isolated from environmental and food specimens. We report the first complete genome sequence of a lineage III isolate, HCC23, which will be used for comparative analysis...
  8. Feng Z, Gomez J, Bowman A, Ye J, Long L, Nelson S, et al. Antigenic characterization of H3N2 influenza A viruses from Ohio agricultural fairs. J Virol. 2013;87:7655-67 pubmed publisher
  9. Small B, Nonneman D. Sequence and expression of a cDNA encoding both pituitary adenylate cyclase activating polypeptide and growth hormone-releasing hormone-like peptide in channel catfish (Ictalurus punctatus). Gen Comp Endocrinol. 2001;122:354-63 pubmed publisher
    ..By characterizing the GHRHLP/PACAP gene and its distribution in channel catfish, we have developed essential tools to investigate the roles of these peptides in the regulation of catfish growth...

More Information


  1. Vidal G, Scheffler B, Michel A, D Surney S. Genomic and phylogenic comparisons of the alpha-globin and beta-globin intergenic sequences between zebra fish (Danio rerio) and six closely related Cyprinindae species. DNA Cell Biol. 2004;23:325-34 pubmed
    ..This may represent an ancestral configuration prior to transposition of the alpha globin and beta-globin genes families to nonsynteny. ..
  2. Paul D, Bridges S, Burgess S, Dandass Y, Lawrence M. Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T. J Bacteriol. 2008;190:5531-2 pubmed publisher
    ..It is also capable of heterotrophic growth under appropriate environmental conditions. Here we report the annotated genome sequence of the circular chromosome of this organism...
  3. Jankun Kelly T, Lindeman A, Bridges S. Exploratory visual analysis of conserved domains on multiple sequence alignments. BMC Bioinformatics. 2009;10 Suppl 11:S7 pubmed publisher
    ..The MSAVis software, written in Python and using BioPython and OpenGL, can be found at ..
  4. Dettler J, Buscaglia R, Cui J, Cashman D, Blynn M, Lewis E. Biophysical characterization of an ensemble of intramolecular i-motifs formed by the human c-MYC NHE III1 P1 promoter mutant sequence. Biophys J. 2010;99:561-7 pubmed publisher
    ..The NMR study did not report the most stable conformer found in this study. ..
  5. Williams M, Gillaspy A, Dyer D, Thune R, Waldbieser G, Schuster S, et al. Genome sequence of Edwardsiella ictaluri 93-146, a strain associated with a natural channel catfish outbreak of enteric septicemia of catfish. J Bacteriol. 2012;194:740-1 pubmed publisher
    ..Here we report the complete genome of Edwardsiella ictaluri 93-146. Whole-genome sequence analysis of E. ictaluri provides a tool for understanding the genomic regions specific to the species and the Edwardsiella genus...
  6. Griffin M, Khoo L, Quiniou S, O Hear M, Pote L, Greenway T, et al. Genetic sequence data identifies the cercaria of Drepanocephalus spathans (Digenea: Echinostomatidae), a parasite of the double-crested cormorant (Phalacrocorax auritus), with notes on its pathology in juvenile channel catfish (Ictalurus punctatus). J Parasitol. 2012;98:967-72 pubmed publisher
    ..The data presented here suggest this parasite could have limiting effects on catfish production, further supporting the need for adequate snail control programs to reduce trematode prevalence on commercial catfish operations...