Experts and Doctors on green fluorescent proteins in Davis, California, United States

Summary

Locale: Davis, California, United States
Topic: green fluorescent proteins

Top Publications

  1. Suter S, Chein M, von Messling V, Yip B, Cattaneo R, Vernau W, et al. In vitro canine distemper virus infection of canine lymphoid cells: a prelude to oncolytic therapy for lymphoma. Clin Cancer Res. 2005;11:1579-87 pubmed
  2. Zhou Y, Garrido Ramirez E, Sudarshana M, Yendluri S, Gilbertson R. The N-terminus of the Begomovirus nuclear shuttle protein (BV1) determines virulence or avirulence in Phaseolus vulgaris. Mol Plant Microbe Interact. 2007;20:1523-34 pubmed
    ..Redundancy of the CP and NSP, which are nuclear proteins involved directly or indirectly in viral movement, provides a masking effect that may allow the virus to avoid host defense responses. ..
  3. Jimenez D, Lee C, O Shea C, Kohn D, Tarantal A. HIV-1-derived lentiviral vectors and fetal route of administration on transgene biodistribution and expression in rhesus monkeys. Gene Ther. 2005;12:821-30 pubmed
    ..These studies suggest that fetal gene transfer using the i.p. and i.h. routes results in prolonged transduction and expression of the transgene in multiple tissues. ..
  4. Jonas B, Privalsky M. SMRT and N-CoR corepressors are regulated by distinct kinase signaling pathways. J Biol Chem. 2004;279:54676-86 pubmed
    ..Our results indicate that SMRT and N-CoR are embedded in distinct regulatory networks and that the two corepressors interpret growth factor, cytokine, differentiation, and prosurvival signals differently. ..
  5. Cheng W, Yang F, Takanishi C, Zheng J. Thermosensitive TRPV channel subunits coassemble into heteromeric channels with intermediate conductance and gating properties. J Gen Physiol. 2007;129:191-207 pubmed
    ..As these subunits coexpress both in sensory neurons and in other tissues, including heart and brain, coassembly between TRPV subunits may contribute to greater functional diversity. ..
  6. Kim J, Mills D. Improvement of a nisin-inducible expression vector for use in lactic acid bacteria. Plasmid. 2007;58:275-83 pubmed
    ..0- and 7.5-fold, respectively. The increased range of inducible expression achieved with pMSP3535H2 will facilitate molecular studies in a range of lactic acid bacteria. ..
  7. Bossuyt J, Chang C, Helmstadter K, Kunkel M, Newton A, Campbell K, et al. Spatiotemporally distinct protein kinase D activation in adult cardiomyocytes in response to phenylephrine and endothelin. J Biol Chem. 2011;286:33390-400 pubmed publisher
    ..This raises new opportunities for targeted therapeutic intervention into distinct limbs of this hypertrophic signaling pathway. ..
  8. Rawsthorne H, Turner K, Mills D. Multicopy integration of heterologous genes, using the lactococcal group II intron targeted to bacterial insertion sequences. Appl Environ Microbiol. 2006;72:6088-93 pubmed
    ..This work demonstrates that stable multicopy integration of heterologous genes can be readily achieved in bacterial genomes with group II intron delivery by targeting repeated elements. ..
  9. Ou G, Qin H, Rosenbaum J, Scholey J. The PKD protein qilin undergoes intraflagellar transport. Curr Biol. 2005;15:R410-1 pubmed

More Information

Publications62

  1. Pignatta D, Dilkes B, Yoo S, Henry I, Madlung A, Doerge R, et al. Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. New Phytol. 2010;186:194-206 pubmed publisher
    ..The unique sensitivity of enhancer traps to ploidy, in contrast to the observed stability of genes, could derive from lower complexity of regulatory pathways acting on traps versus endogenous genes. ..
  2. Lin Y, Chai Y. Functional modulation of the ATP-sensitive potassium channel by extracellular signal-regulated kinase-mediated phosphorylation. Neuroscience. 2008;152:371-80 pubmed publisher
    ..As Kir6.2 is the pore-forming subunit of K(ATP) channels, ERK2-mediated phosphorylation may represent a common mechanism for K(ATP) channel regulation in different tissues. ..
  3. Huberman A, Murray K, Warland D, Feldheim D, Chapman B. Ephrin-As mediate targeting of eye-specific projections to the lateral geniculate nucleus. Nat Neurosci. 2005;8:1013-21 pubmed
  4. Chang W, Tarantal A, Zhou S, Borowsky A, Barry P. A recombinant rhesus cytomegalovirus expressing enhanced green fluorescent protein retains the wild-type phenotype and pathogenicity in fetal macaques. J Virol. 2002;76:9493-504 pubmed
    ..The pattern of RhCMV infection in the central nervous system may offer an explanation for the severe developmental outcomes associated with congenital human CMV infection early in gestation. ..
  5. Rojas M, Jiang H, Salati R, Xoconostle Cazares B, Sudarshana M, Lucas W, et al. Functional analysis of proteins involved in movement of the monopartite begomovirus, Tomato yellow leaf curl virus. Virology. 2001;291:110-25 pubmed
    ..Thus, the V1 and/or C4 may be analogs of the bipartite begomovirus BC1 that have evolved to mediate TYLCV movement within phloem tissue...
  6. Lu L, Lee Y, Pan R, Maloof J, Liu B. An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis. Mol Biol Cell. 2005;16:811-23 pubmed
    ..Our results also indicate that plant kinesins in the MCAK/Kinesin-13 subfamily have evolved to take on different tasks than their animal counterparts. ..
  7. Yeh H, Tian T, Medina V, Falk B. Green fluorescent protein expression from recombinant lettuce infectious yellows virus-defective RNAs originating from RNA 2. Virology. 2001;289:54-62 pubmed
    ..8%. Time course analyses showed that fluorescence was not detected before 48 h pi, and this correlated with the timing of LIYV RNA 2 and RNA 2 D RNA accumulation, but not with that of LIYV RNA 1...
  8. Kim J, Dalton V, Eggerton K, Scott S, Klionsky D. Apg7p/Cvt2p is required for the cytoplasm-to-vacuole targeting, macroautophagy, and peroxisome degradation pathways. Mol Biol Cell. 1999;10:1337-51 pubmed
  9. Wang J, Yeh H, Falk B. cis preferential replication of Lettuce infectious yellows virus (LIYV) RNA 1: the initial step in the asynchronous replication of the LIYV genomic RNAs. Virology. 2009;386:217-23 pubmed publisher
    ..Taken together, these data strongly suggest that LIYV RNA 1 replication is cis-preferential...
  10. Wong A, Draper B, Van Eenennaam A. FLPe functions in zebrafish embryos. Transgenic Res. 2011;20:409-15 pubmed publisher
    ..Our results show that FLPe, which is derived from Saccharomyces cerevisiae, is an efficient recombinase in zebrafish maintained at 28.5°C. ..
  11. Bertolini L, Bertolini M, Anderson G, Maga E, Madden K, Murray J. Transient depletion of Ku70 and Xrcc4 by RNAi as a means to manipulate the non-homologous end-joining pathway. J Biotechnol. 2007;128:246-57 pubmed
    ..The results highlight the possibility of a successful means to manipulate the NHEJ pathway by RNAi. ..
  12. Leshem Y, Johnson C, Wuest S, Song X, Ngo Q, Grossniklaus U, et al. Molecular characterization of the glauce mutant: a central cell-specific function is required for double fertilization in Arabidopsis. Plant Cell. 2012;24:3264-77 pubmed
  13. Beer R, Draper B. nanos3 maintains germline stem cells and expression of the conserved germline stem cell gene nanos2 in the zebrafish ovary. Dev Biol. 2013;374:308-18 pubmed publisher
    ..Here we demonstrate that nanos3 function is required for the maintenance of GSCs, but not for their specification, and propose that nanos2 and nanos3 are partially redundant in this role. ..
  14. Belmonte M, Kirkbride R, Stone S, Pelletier J, Bui A, Yeung E, et al. Comprehensive developmental profiles of gene activity in regions and subregions of the Arabidopsis seed. Proc Natl Acad Sci U S A. 2013;110:E435-44 pubmed publisher
    ..These studies emphasize the utility of these data sets as an essential resource for the study of seed biology. ..
  15. Lackner L, Ping H, Graef M, Murley A, Nunnari J. Endoplasmic reticulum-associated mitochondria-cortex tether functions in the distribution and inheritance of mitochondria. Proc Natl Acad Sci U S A. 2013;110:E458-67 pubmed publisher
  16. Sharp D, Rogers G, Scholey J. Cytoplasmic dynein is required for poleward chromosome movement during mitosis in Drosophila embryos. Nat Cell Biol. 2000;2:922-30 pubmed
    ..Thus, dynein is essential for poleward chromosome motility throughout mitosis in Drosophila embryos. ..
  17. Fan J, Beck K. A role for the spectrin superfamily member Syne-1 and kinesin II in cytokinesis. J Cell Sci. 2004;117:619-29 pubmed
    ..We conclude that Syne-1 and KIF3B function together in cytokinesis by facilitating the accumulation of membrane vesicles at the spindle midbody. ..
  18. Nazarov I, Smirnova A, Krutilina R, Svetlova M, Solovjeva L, Nikiforov A, et al. Dephosphorylation of histone gamma-H2AX during repair of DNA double-strand breaks in mammalian cells and its inhibition by calyculin A. Radiat Res. 2003;160:309-17 pubmed
    ..Our results confirm the tight association between DSBs and gamma-H2AX and the coupling of its in situ dephosphorylation to DSB repair. ..
  19. Naylor K, Ingerman E, Okreglak V, Marino M, Hinshaw J, Nunnari J. Mdv1 interacts with assembled dnm1 to promote mitochondrial division. J Biol Chem. 2006;281:2177-83 pubmed
    ..Dnm1 complex in mitochondrial division, we performed a structure-function analysis of the Mdv1 adaptor. Our analysis suggests that dynamic interactions between Mdv1 and Dnm1 play a key role in division by regulating Dnm1 self-assembly. ..
  20. Lewis S, Uchiyama L, Nunnari J. ER-mitochondria contacts couple mtDNA synthesis with mitochondrial division in human cells. Science. 2016;353:aaf5549 pubmed publisher
    ..Thus, ER-mitochondria contacts coordinate licensing of mtDNA synthesis with division to distribute newly replicated nucleoids to daughter mitochondria. ..
  21. Zhao H, Shen A, Xiang Y, Corey D. Three Recombinant Engineered Antibodies against Recombinant Tags with High Affinity and Specificity. PLoS ONE. 2016;11:e0150125 pubmed publisher
    ..These antibody/epitope pairs have affinities in the low picomolar range and are useful tools for many antibody-based applications. ..
  22. Sharp D, Yu K, Sisson J, Sullivan W, Scholey J. Antagonistic microtubule-sliding motors position mitotic centrosomes in Drosophila early embryos. Nat Cell Biol. 1999;1:51-4 pubmed
    ..Our data indicate that KLP61F and Ncd may function by crosslinking and sliding antiparallel spindle microtubules in relation to one another, allowing KLP61F to push centrosomes apart and Ncd to pull them together. ..
  23. Vapniarsky N, Lame M, McDonnel S, Murphy B. A lentiviral gene therapy strategy for the in vitro production of feline erythropoietin. PLoS ONE. 2012;7:e45099 pubmed publisher
    ..Anemic cats with chronic renal failure represent a potential in vivo application of a lentiviral gene therapy system. ..
  24. Risser D, Wong F, Meeks J. Biased inheritance of the protein PatN frees vegetative cells to initiate patterned heterocyst differentiation. Proc Natl Acad Sci U S A. 2012;109:15342-7 pubmed
    ..We suggest that biased inheritance of cell-fate determinants is a phylogenetic domain-spanning paradigm in the development of biological patterns. ..
  25. Siino J, Nazarov I, Svetlova M, Solovjeva L, Adamson R, Zalenskaya I, et al. Photobleaching of GFP-labeled H2AX in chromatin: H2AX has low diffusional mobility in the nucleus. Biochem Biophys Res Commun. 2002;297:1318-23 pubmed
    ..This suggests that gamma-H2AX formation in chromatin is unlikely to occur by diffusion of free histone and gamma-H2AX dephosphorylation may involve the mammalian protein phosphatase 1alpha. ..
  26. Hoem G, Raske C, Garcia Arocena D, Tassone F, Sanchez E, Ludwig A, et al. CGG-repeat length threshold for FMR1 RNA pathogenesis in a cellular model for FXTAS. Hum Mol Genet. 2011;20:2161-70 pubmed publisher
  27. Gemeniano M, Sawai E, Leutenegger C, Sparger E. Feline immunodeficiency virus ORF-Ais required for virus particle formation and virus infectivity. J Virol. 2003;77:8819-30 pubmed
    ..Furthermore, these observations suggest that Orf-A represents an FIV-encoded analog more similar to the accessory gene vpr, vpu, or nef than to the regulatory gene tat encoded by the primate lentiviruses...
  28. Oddone G, Mills D, Block D. Incorporation of nisI-mediated nisin immunity improves vector-based nisin-controlled gene expression in lactic acid bacteria. Plasmid. 2009;61:151-8 pubmed publisher
    ..Therefore, the incorporation of nisI in the pMSP3535H3 NICE system described here unveils new ranges of induction parameters to be studied in the course of optimizing recombinant protein expression in LAB. ..
  29. Cheerambathur D, Brust Mascher I, Civelekoglu Scholey G, Scholey J. Dynamic partitioning of mitotic kinesin-5 cross-linkers between microtubule-bound and freely diffusing states. J Cell Biol. 2008;182:429-36 pubmed publisher
    ..KLP61F appears to transiently bind MTs, moving short distances along them before detaching. Thus, kinesin-5 motors can function by cross-linking and sliding adjacent spindle MTs without the need for a static spindle matrix. ..
  30. Morishita M, Mendonsa R, Wright J, Engebrecht J. Snc1p v-SNARE transport to the prospore membrane during yeast sporulation is dependent on endosomal retrieval pathways. Traffic. 2007;8:1231-45 pubmed
    ..Taken together, these results indicate that retrograde trafficking from the endosome is essential for sporulation by retrieving molecules important for PSM and spore wall formation. ..
  31. Ou G, Koga M, Blacque O, Murayama T, Ohshima Y, Schafer J, et al. Sensory ciliogenesis in Caenorhabditis elegans: assignment of IFT components into distinct modules based on transport and phenotypic profiles. Mol Biol Cell. 2007;18:1554-69 pubmed
  32. Vallad G, Subbarao K. Colonization of resistant and susceptible lettuce cultivars by a green fluorescent protein-tagged isolate of Verticillium dahliae. Phytopathology. 2008;98:871-85 pubmed publisher
    ..Results indicated that resistance in lettuce may lie with the plant's ability to shed infected lateral roots or to inhibit the systemic progress of the fungus through vascular tissues into the taproot. ..
  33. Ellefson M, McNally F. Kinesin-1 and cytoplasmic dynein act sequentially to move the meiotic spindle to the oocyte cortex in Caenorhabditis elegans. Mol Biol Cell. 2009;20:2722-30 pubmed publisher
    ..This represents a case of kinesin-1/dynein coordination in which these two motors of opposite polarity act sequentially and independently on a cargo to move it in the same direction. ..
  34. Morishita M, Engebrecht J. End3p-mediated endocytosis is required for spore wall formation in Saccharomyces cerevisiae. Genetics. 2005;170:1561-74 pubmed
    ..Thus, END3-mediated endocytosis is important for spore wall formation. Additionally, cytological analyses suggest that trafficking between the plasma membrane and PSMs is important earlier during sporulation. ..
  35. Wang H, Brust Mascher I, Civelekoglu Scholey G, Scholey J. Patronin mediates a switch from kinesin-13-dependent poleward flux to anaphase B spindle elongation. J Cell Biol. 2013;203:35-46 pubmed publisher
    ..Although intact cortices, kinetochore MTs, and midzone augmentation are dispensable, this patronin-based change in ipMT minus-end dynamics is sufficient to induce the elongation of spindles capable of separating chromosomes...
  36. Wang J, Stewart L, Kiss Z, Falk B. Lettuce infectious yellows virus (LIYV) RNA 1-encoded P34 is an RNA-binding protein and exhibits perinuclear localization. Virology. 2010;403:67-77 pubmed publisher
    ..Together, these data provide insight into LIYV replication and possible functions of P34...
  37. Lee J, Yoo B, Rojas M, Gomez Ospina N, Staehelin L, Lucas W. Selective trafficking of non-cell-autonomous proteins mediated by NtNCAPP1. Science. 2003;299:392-6 pubmed publisher
    ..These results support a model in which NCAP delivery to plasmodesmata is both selective and regulated...
  38. Hagen K, Hirakawa M, House S, Schwartz C, Pham J, Cipriano M, et al. Novel structural components of the ventral disc and lateral crest in Giardia intestinalis. PLoS Negl Trop Dis. 2011;5:e1442 pubmed publisher
  39. Merod R, Warren J, McCaslin H, Wuertz S. Toward automated analysis of biofilm architecture: bias caused by extraneous confocal laser scanning microscopy images. Appl Environ Microbiol. 2007;73:4922-30 pubmed
    ..This study shows that the failure to remove extraneous images skewed a seemingly objective analysis of biofilm architecture and significantly altered statistically derived conclusions. ..
  40. Ng J, Tian T, Falk B. Quantitative parameters determining whitefly (Bemisia tabaci) transmission of Lettuce infectious yellows virus and an engineered defective RNA. J Gen Virol. 2004;85:2697-707 pubmed
  41. Kim M, Curry F, Simon S. Dynamics of neutrophil extravasation and vascular permeability are uncoupled during aseptic cutaneous wounding. Am J Physiol Cell Physiol. 2009;296:C848-56 pubmed publisher
  42. Jiang P, Chen C, Wang R, Chechneva O, Chung S, Rao M, et al. hESC-derived Olig2+ progenitors generate a subtype of astroglia with protective effects against ischaemic brain injury. Nat Commun. 2013;4:2196 pubmed publisher
  43. Signor D, Wedaman K, Rose L, Scholey J. Two heteromeric kinesin complexes in chemosensory neurons and sensory cilia of Caenorhabditis elegans. Mol Biol Cell. 1999;10:345-60 pubmed
  44. Lucas W, Lee J. Plasmodesmata as a supracellular control network in plants. Nat Rev Mol Cell Biol. 2004;5:712-26 pubmed
    ..In higher plants, this pathway involves the trafficking of proteins and various forms of RNA that function non-cell-autonomously to affect developmental programmes...
  45. Hwang M, Lindenmuth B, McDonald K, Falk B. Bipartite and tripartite Cucumber mosaic virus-based vectors for producing the Acidothermus cellulolyticus endo-1,4-?-glucanase and other proteins in non-transgenic plants. BMC Biotechnol. 2012;12:66 pubmed publisher
    ..Also, N. benthamiana, which is particularly suitable for agroinfiltration, is a very good plant for transient protein production. ..
  46. Raetz A, Xie Y, Kundu S, Brinkmeyer M, Chang C, David S. Cancer-associated variants and a common polymorphism of MUTYH exhibit reduced repair of oxidative DNA damage using a GFP-based assay in mammalian cells. Carcinogenesis. 2012;33:2301-9 pubmed publisher
  47. Zhou H, Brust Mascher I, Scholey J. Direct visualization of the movement of the monomeric axonal transport motor UNC-104 along neuronal processes in living Caenorhabditis elegans. J Neurosci. 2001;21:3749-55 pubmed
    ..To our knowledge, this is the first direct visualization and analysis of the movement of specifically labeled microtubule motor proteins along axons in vivo. ..
  48. Meeusen S, McCaffery J, Nunnari J. Mitochondrial fusion intermediates revealed in vitro. Science. 2004;305:1747-52 pubmed
    ..Our conclusions provide fundamental insights into the molecular events driving mitochondrial fusion and advance our understanding of the evolution of mitochondrial fusion in eukaryotic cells. ..
  49. Nguyen T, Uemura A, Shih W, Yamada S. Zyxin-mediated actin assembly is required for efficient wound closure. J Biol Chem. 2010;285:35439-45 pubmed publisher
    ..Our results suggest that, by recruiting VASP, zyxin regulates actin assembly at the sites of force-bearing cell-cell adhesion...
  50. Meeusen S, Nunnari J. Evidence for a two membrane-spanning autonomous mitochondrial DNA replisome. J Cell Biol. 2003;163:503-10 pubmed
    ..Taken together, our observations reveal the existence of an autonomous two membrane-spanning mitochondrial replisome as well as provide a mechanism for how mtDNA replication and inheritance may be physically linked. ..
  51. Wang J, Turina M, Stewart L, Lindbo J, Falk B. Agroinoculation of the Crinivirus, Lettuce infectious yellows virus, for systemic plant infection. Virology. 2009;392:131-6 pubmed publisher
  52. Bent Z, Branda S, Young G. The Yersinia enterocolitica Ysa type III secretion system is expressed during infections both in vitro and in vivo. Microbiologyopen. 2013;2:962-75 pubmed publisher
  53. Arocena D, Iwahashi C, Won N, Beilina A, Ludwig A, Tassone F, et al. Induction of inclusion formation and disruption of lamin A/C structure by premutation CGG-repeat RNA in human cultured neural cells. Hum Mol Genet. 2005;14:3661-71 pubmed