Experts and Doctors on molecular sequence data in Pushchino, MO, Russia

Summary

Locale: Pushchino, MO, Russia
Topic: molecular sequence data

Top Publications

  1. Tishchenko S, Nikonova E, Kostareva O, Gabdulkhakov A, Piendl W, Nevskaya N, et al. Structural analysis of interdomain mobility in ribosomal L1 proteins. Acta Crystallogr D Biol Crystallogr. 2011;67:1023-7 pubmed publisher
    ..It was found that this mutation transformed the closed conformation of the bacterial L1 protein into an open conformation similar to that of the archaeal L1 proteins. ..
  2. Ugarov V, Demidenko A, Chetverin A. Qbeta replicase discriminates between legitimate and illegitimate templates by having different mechanisms of initiation. J Biol Chem. 2003;278:44139-46 pubmed
    ..Triggering the GTP-dependent conformational transition at the initiation step could serve as a discriminative feature of legitimate templates providing for the high template specificity of Qbeta replicase. ..
  3. Ugarov V, Chetverin A. Functional circularity of legitimate Qbeta replicase templates. J Mol Biol. 2008;379:414-27 pubmed publisher
  4. Timchenko A, Novosylna O, Prituzhalov E, Kihara H, El skaya A, Negrutskii B, et al. Different oligomeric properties and stability of highly homologous A1 and proto-oncogenic A2 variants of mammalian translation elongation factor eEF1. Biochemistry. 2013;52:5345-53 pubmed publisher
  5. Beletskaya I, Zakharova M, Shlyapnikov M, Semenova L, Solonin A. DNA methylation at the CfrBI site is involved in expression control in the CfrBI restriction-modification system. Nucleic Acids Res. 2000;28:3817-22 pubmed
    ..CFR:BI. From the results of the in vivo and in vitro experiments we suggest a new model of gene expression regulation in type II R-M systems. ..
  6. Morozov I, Ugarov V, Chetverin A, Spirin A. Synergism in replication and translation of messenger RNA in a cell-free system. Proc Natl Acad Sci U S A. 1993;90:9325-9 pubmed
    ..The coupled replication-translation of nonviral mRNA recombinants can serve as a useful model for studying the fundamental aspects of virus amplification and can be implemented for large-scale protein synthesis in vitro. ..
  7. Dyachenko O, Zakharchenko N, Shevchuk T, Bohnert H, Cushman J, Buryanov Y. Effect of hypermethylation of CCWGG sequences in DNA of Mesembryanthemum crystallinum plants on their adaptation to salt stress. Biochemistry (Mosc). 2006;71:461-5 pubmed
    ..crystallinum plants on their adaptation to salt stress and switching-over to CAM metabolism. ..
  8. Ibryashkina E, Zakharova M, Baskunov V, Bogdanova E, Nagornykh M, Den mukhamedov M, et al. Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily. BMC Struct Biol. 2007;7:48 pubmed
    ..Our study provides the first experimental evidence for a Type IIP REase that does not belong to the PD-(D/E)XK or HNH superfamilies of nucleases, and is instead a member of the unrelated GIY-YIG superfamily. ..
  9. Firsova J, Doronina N, Lang E, Sproer C, Vuilleumier S, Trotsenko Y. Ancylobacter dichloromethanicus sp. nov.--a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane. Syst Appl Microbiol. 2009;32:227-32 pubmed publisher
    ..nov. with the type strain DM16T (DSM 21507T = VKM B-2484T). ..

More Information

Publications71

  1. Rozova O, Khmelenina V, Mustakhimov I, Reshetnikov A, Trotsenko Y. Characterization of recombinant fructose-1,6-bisphosphate aldolase from Methylococcus capsulatus Bath. Biochemistry (Mosc). 2010;75:892-8 pubmed
    ..The role of the FBA in metabolism of Mc. capsulatus Bath, which realizes simultaneously three C(1) assimilating pathways (the ribulose monophosphate, the ribulose bisphosphate, and the serine cycles), is discussed. ..
  2. Nesmeyanova M, Karamyshev A, Karamysheva Z, Kalinin A, Ksenzenko V, Kajava A. Positively charged lysine at the N-terminus of the signal peptide of the Escherichia coli alkaline phosphatase provides the secretion efficiency and is involved in the interaction with anionic phospholipids. FEBS Lett. 1997;403:203-7 pubmed
    ..A structural analysis of the SP-APL interaction suggests that the positively charged Lys(-20) determines the stability of the complex. ..
  3. Serganova I, Ksenzenko V, Serganov A, Meshcheryakova I, Pyatibratov M, Vakhrusheva O, et al. Sequencing of flagellin genes from Natrialba magadii provides new insight into evolutionary aspects of archaeal flagellins. J Bacteriol. 2002;184:318-22 pubmed
    ..Based on the sequence analysis we suggest that different regions of the genes might have distinct evolutionary histories including possible genetic exchange with bacterial flagellin genes...
  4. Klevanik A. Hydrophobicity and prediction of the secondary structure of membrane proteins and peptides. Membr Cell Biol. 2001;14:673-97 pubmed
  5. Nikulin A, Eliseikina I, Tishchenko S, Nevskaya N, Davydova N, Platonova O, et al. Structure of the L1 protuberance in the ribosome. Nat Struct Biol. 2003;10:104-8 pubmed publisher
    ..Incorporation of the L1-rRNA complex into the structural models of the T. thermophilus 70S ribosome and the Deinococcus radiodurans 50S subunit gives a reliable representation of most of the L1 protuberance within the ribosome...
  6. Kovalevskiy O, Lebedev A, Surin A, Solonin A, Antson A. Crystal structure of Bacillus cereus HlyIIR, a transcriptional regulator of the gene for pore-forming toxin hemolysin II. J Mol Biol. 2007;365:825-34 pubmed publisher
    ..Based on structural data and previous biochemical evidence, we propose a model for HlyIIR interaction with the DNA...
  7. Krivushin K, Shcherbakova V, Petrovskaya L, Rivkina E. Methanobacterium veterum sp. nov., from ancient Siberian permafrost. Int J Syst Evol Microbiol. 2010;60:455-9 pubmed publisher
    ..nov., with the type strain MK4(T) (=DSM 19849(T) =VKM B-2440(T))...
  8. Nevskaya N, Tishchenko S, Volchkov S, Kljashtorny V, Nikonova E, Nikonov O, et al. New insights into the interaction of ribosomal protein L1 with RNA. J Mol Biol. 2006;355:747-59 pubmed
    ..Incorporation of the structure of bacterial L1 into a model of the Escherichia coli ribosome revealed two additional contact regions for L1 on the 23S rRNA that were not identified in previous ribosome models...
  9. Doronina N, Trotsenko Y, Kolganova T, Tourova T, Salkinoja Salonen M. Methylobacillus pratensis sp. nov., a novel non-pigmented, aerobic, obligately methylotrophic bacterium isolated from meadow grass. Int J Syst Evol Microbiol. 2004;54:1453-7 pubmed
    ..Thus, on the basis of its genotypic and phenotypic properties, the isolate is proposed as a novel species of the genus Methylobacillus, Methylobacillus pratensis sp. nov., with F31T as the type strain (= VKM B-2247T = NCIMB 13994T)...
  10. Glukhov A, Krutilina A, Shlyapnikov M, Severinov K, Lavysh D, Kochetkov V, et al. Genomic analysis of Pseudomonas putida phage tf with localized single-strand DNA interruptions. PLoS ONE. 2012;7:e51163 pubmed publisher
    ..Although localized nicks were previously found only in the DNA of T5-like and phiKMV-like phages, it seems increasingly likely that this enigmatic structural feature is common to various other bacteriophages...
  11. Izmalkova T, Sazonova O, Nagornih M, Sokolov S, Kosheleva I, Boronin A. The organization of naphthalene degradation genes in Pseudomonas putida strain AK5. Res Microbiol. 2013;164:244-53 pubmed publisher
    ..The sgp-operon organization and phylogenetic analysis of deduced amino acid sequences indicate that this operon has a mosaic structure according to the modular theory of the evolution of modern catabolic pathways. ..
  12. Kaliman A, Khasanova M, Kryukov V, Tanyashin V, Bayev A. The nucleotide sequence of the region of bacteriophage T4 inh(lip)-hoc genes. Nucleic Acids Res. 1990;18:4277 pubmed
  13. Skabkina O, Lyabin D, Skabkin M, Ovchinnikov L. YB-1 autoregulates translation of its own mRNA at or prior to the step of 40S ribosomal subunit joining. Mol Cell Biol. 2005;25:3317-23 pubmed
    ..Thus, YB-1 negatively regulates its own synthesis, presumably by specific interaction with the 3'UTR regulatory element, whereas PABP restores translational activity of YB-1 mRNA by displacing YB-1 from this element. ..
  14. Kalyuzhnaya M, Khmelenina V, Kotelnikova S, Holmquist L, Pedersen K, Trotsenko Y. Methylomonas scandinavica sp. nov., a new methanotrophic psychrotrophic bacterium isolated from deep igneous rock ground water of Sweden. Syst Appl Microbiol. 1999;22:565-72 pubmed
    ..Based on pheno- and genotypic characteristics we propose to refer the strain SR5 as to a new species, Methylomonas scandinavica...
  15. Dorofeeva L, Krausova V, Evtushenko L, Tiedje J. Agromyces albus sp. nov., isolated from a plant (Androsace sp.). Int J Syst Evol Microbiol. 2003;53:1435-8 pubmed
    ..The G+C content of the DNA was 69.0 mol%. The type strain is VKM Ac-1800(T) (=UCM Ac-623(T))...
  16. Chetverin A, Kopein D, Chetverina H, Demidenko A, Ugarov V. Viral RNA-directed RNA polymerases use diverse mechanisms to promote recombination between RNA molecules. J Biol Chem. 2005;280:8748-55 pubmed
    ..The data favor an RNA transesterification reaction catalyzed by a conformation acquired by Qbeta replicase during RNA synthesis and provide a likely explanation for the very low frequency of homologous recombination in Qbeta phage...
  17. Yanyushin M, del Rosario M, Brune D, Blankenship R. New class of bacterial membrane oxidoreductases. Biochemistry. 2005;44:10037-45 pubmed
    ..This appears to be a widespread yet previously unrecognized protein complex involved in energy metabolism in bacteria...
  18. Nevskaya N, Tishchenko S, Paveliev M, Smolinskaya Y, Fedorov R, Piendl W, et al. Structure of ribosomal protein L1 from Methanococcus thermolithotrophicus. Functionally important structural invariants on the L1 surface. Acta Crystallogr D Biol Crystallogr. 2002;58:1023-9 pubmed
  19. Evtushenko L, Dorofeeva L, Dobrovolskaya T, Streshinskaya G, Subbotin S, Tiedje J. Agreia bicolorata gen. nov., sp. nov., to accommodate actinobacteria isolated from narrow reed grass infected by the nematode Heteroanguina graminophila. Int J Syst Evol Microbiol. 2001;51:2073-9 pubmed
    ..The DNA G+C content of Agreia bicolorata is about 67.0 mol %. ..
  20. Pyatibratov M, Beznosov S, Rachel R, Tiktopulo E, Surin A, Syutkin A, et al. Alternative flagellar filament types in the haloarchaeon Haloarcula marismortui. Can J Microbiol. 2008;54:835-44 pubmed publisher
  21. Gongadze G, Meshcheryakov V, Serganov A, Fomenkova N, Mudrik E, Jonsson B, et al. N-terminal domain, residues 1-91, of ribosomal protein TL5 from Thermus thermophilus binds specifically and strongly to the region of 5S rRNA containing loop E. FEBS Lett. 1999;451:51-5 pubmed
    ..The isolated RNA fragment forms stable complexes with TL5 and its N-terminal domain. Crystals of TL5 in complex with the RNA fragment diffracting to 2.75 A resolution were obtained. ..
  22. Karamyshev A, Karamysheva Z, Kajava A, Ksenzenko V, Nesmeyanova M. Processing of Escherichia coli alkaline phosphatase: role of the primary structure of the signal peptide cleavage region. J Mol Biol. 1998;277:859-70 pubmed
    ..Conformation analysis of the cleavage site taken together with the mutation and statistical data suggests an extended beta-conformation of the -5 to -1 region in the signal peptidase binding pocket. ..
  23. Zakharova M, Beletskaya I, Kravetz A, Pertzev A, Mayorov S, Shlyapnikov M, et al. Cloning and sequence analysis of the plasmid-borne genes encoding the Eco29kI restriction and modification enzymes. Gene. 1998;208:177-82 pubmed
    ..J. Mol. Biol. 257, 949-959), which recognizes five different sites on DNA (HaeII, MluI, Cfr10I, SacII and BssHII), and the comparison of the nt sequences of its variable regions allowed us to determine the putative TRD of MEco29kI...
  24. Ivashina T, Fedorova E, Ashina N, Kalinchuk N, Druzhinina T, Shashkov A, et al. Mutation in the pssM gene encoding ketal pyruvate transferase leads to disruption of Rhizobium leguminosarum bv. viciae-Pisum sativum symbiosis. J Appl Microbiol. 2010;109:731-42 pubmed publisher
  25. Doronina N, Gogleva A, Trotsenko Y. Methylophilus glucosoxydans sp. nov., a restricted facultative methylotroph from rice rhizosphere. Int J Syst Evol Microbiol. 2012;62:196-201 pubmed publisher
    ..nov. is proposed; the type strain is B(T) (=VKM B-1607(T)=CCUG 59685(T)=DSM 5898(T))...
  26. Kaliman A, Kulshin V, Shlyapnikov M, Ksenzenko V, Kryukov V. The nucleotide sequence of the bacteriophage T5 ltf gene. FEBS Lett. 1995;366:46-8 pubmed
    ..Data bank analysis of the LTF protein sequence reveals 55.1% identity to the hypothetical protein ORF 401 of bacteriophage lambda in a segment of 118 amino acids overlap. ..
  27. Garber M, Agalarov S, Eliseikina I, Fomenkova N, Nikonov S, Sedelnikova S, et al. Ribosomal proteins from Thermus thermophilus for structural investigations. Biochimie. 1992;74:327-36 pubmed
    ..S6 is a small acidic protein from the small ribosomal subunit. The crystals of S6 are orthorhombic and diffract to 2 A resolution. Native data and derivatives' data have been collected. ..
  28. Stolboushkina E, Nikonov S, Nikulin A, Bl si U, Manstein D, Fedorov R, et al. Crystal structure of the intact archaeal translation initiation factor 2 demonstrates very high conformational flexibility in the alpha- and beta-subunits. J Mol Biol. 2008;382:680-91 pubmed publisher
  29. Nikonov O, Stolboushkina E, Nikulin A, Hasen hrl D, Bl si U, Manstein D, et al. New insights into the interactions of the translation initiation factor 2 from archaea with guanine nucleotides and initiator tRNA. J Mol Biol. 2007;373:328-36 pubmed publisher
    ..Thus, this model is in good agreement with experimental data showing that the alpha subunit of aIF2 is necessary for the stable interaction of aIF2gamma with Met-tRNA i Met...
  30. Lin C, Koval A, Tishchenko S, Gabdulkhakov A, Tin U, Solis G, et al. Double suppression of the G? protein activity by RGS proteins. Mol Cell. 2014;53:663-71 pubmed publisher
    ..Our studies identify Dhit and its homologs as double-action regulators, inhibiting G?o/i proteins both through suppression of their activation and acceleration of their inactivation through the single RGS domain. ..
  31. Kravchenko O, Mitroshin I, Nikonov S, Piendl W, Garber M. Structure of a two-domain N-terminal fragment of ribosomal protein L10 from Methanococcus jannaschii reveals a specific piece of the archaeal ribosomal stalk. J Mol Biol. 2010;399:214-20 pubmed publisher
    ..Furthermore, our model incorporated into the structure of the H. marismortui 50S ribosomal subunit allows clarification of the structure of the archaeal ribosomal stalk base...
  32. Doronina N, Kaparullina E, Bykova T, Trotsenko Y. Methylopila musalis sp. nov., an aerobic, facultatively methylotrophic bacterium isolated from banana fruit. Int J Syst Evol Microbiol. 2013;63:1847-52 pubmed publisher
    ..nov. is proposed. The type strain is MUSA(T) (?=?VKM B-2646(T)?=?DSM 24986(T)?=?CCUG 61696(T))...
  33. Mikoulinskaia G, Gubanov S, Zimin A, Kolesnikov I, Feofanov S, Miroshnikov A. Purification and characterization of the deoxynucleoside monophosphate kinase of bacteriophage T5. Protein Expr Purif. 2003;27:195-201 pubmed
    ..A comparison of this amino acid sequence and those of known enzymes with a similar function suggests the presence of a nucleotide-binding site in the sequenced region. ..
  34. Evtushenko L, Dorofeeva L, Krausova V, Gavrish E, Yashina S, Takeuchi M. Okibacterium fritillariae gen. nov., sp. nov., a novel genus of the family Microbacteriaceae. Int J Syst Evol Microbiol. 2002;52:987-93 pubmed
  35. Agafonov D, Kolb V, Nazimov I, Spirin A. A protein residing at the subunit interface of the bacterial ribosome. Proc Natl Acad Sci U S A. 1999;96:12345-9 pubmed
    ..The protein was shown to stabilize ribosomes against dissociation. The possible role of the protein Y as ribosome association factor in translation is discussed...
  36. Davydova N, Rak A, Gryaznova O, Liljas A, Jonsson B, Berglund H, et al. Preliminary NMR studies of Thermus thermophilus ribosomal protein S19 overproduced in Escherichia coli. FEBS Lett. 1997;415:155-9 pubmed
    ..A simple procedure for isolating the recombinant protein was developed. Preliminary NMR studies revealed a high content of alpha-helical secondary structure in the protein. ..
  37. Kaliman A. Identification of the bacteriophage T5 dUTPase by protein sequence comparisons. DNA Seq. 1996;6:347-50 pubmed
    ..A similarity in size and high degree of sequence identity strongly suggest that the protein encoded by the ORF 148 of bacteriophage T5 is dUTPase. ..
  38. Vysotskaya V, Shcherbakov D, Garber M. Sequencing and analysis of the Thermus thermophilus ribosomal protein gene cluster equivalent to the spectinomycin operon. Gene. 1997;193:23-30 pubmed
    ..thermophilus proteins share about 51-100% identities with the sequences of homologous proteins from thermophile Thermus aquaticus and Thermotoga maritima and 27-70% identities with the sequences of their mesophile counterparts. ..
  39. Nikulin A, Stolboushkina E, Perederina A, Vassilieva I, Blaesi U, Moll I, et al. Structure of Pseudomonas aeruginosa Hfq protein. Acta Crystallogr D Biol Crystallogr. 2005;61:141-6 pubmed publisher
  40. Baida G, Kuzmin N. Cloning and primary structure of a new hemolysin gene from Bacillus cereus. Biochim Biophys Acta. 1995;1264:151-4 pubmed
    ..Shiba, A., Seo, S., Yamamoto, J., Matsuyama, J. and Miwatani, T. (1991) FEMS Microbiol. Lett. 79, 205-210)...
  41. Ivashina T, Khmelnitsky M, Shlyapnikov M, Kanapin A, Ksenzenko V. The pss4 gene from Rhizobium leguminosarum by viciae VF39: cloning, sequence and the possible role in polysaccharide production and nodule formation. Gene. 1994;150:111-6 pubmed
    ..A nearly complete homology was found with PssA from Rl biovar phaseoli 8002 [Borthakur et al., Mol. Gen. Genet. 213 (1988) 155-162], except that Pss4 has an additional 63 aa on its N terminus. ..
  42. Murina V, Nikulin A. RNA-binding Sm-like proteins of bacteria and archaea. similarity and difference in structure and function. Biochemistry (Mosc). 2011;76:1434-49 pubmed publisher
    ..This review is focused on a comparison of architecture of bacterial and archaeal LSm proteins and their interaction with different RNA molecules...
  43. Eliseeva I, Kim E, Guryanov S, Ovchinnikov L, Lyabin D. Y-box-binding protein 1 (YB-1) and its functions. Biochemistry (Mosc). 2011;76:1402-33 pubmed publisher
    ..Both the oncogenic and antioncogenic activities of YB-1 are reviewed. The potential use of YB-1 in diagnostics and therapy as an early cancer marker and a molecular target is discussed. ..
  44. Zheltonosova J, Melnikova E, Garber M, Reinbolt J, Kern D, Ehresmann C, et al. Threonyl-tRNA synthetase from Thermus thermophilus: purification and some structural and kinetic properties. Biochimie. 1994;76:71-7 pubmed
    ..This efficiency remains unchanged for aminoacylation of tRNA(Thr) from T thermophilus by the heterologous ThrRS from E coli, but decreases 700 times for aminoacylation of E coli tRNA(Thr) by ThrRS from T thermophilus...
  45. Ozoline O, Tsyganov M. Structure of open promoter complexes with Escherichia coli RNA polymerase as revealed by the DNase I footprinting technique: compilation analysis. Nucleic Acids Res. 1995;23:4533-41 pubmed
    ..The model of alternative pathways used for promoter activation is discussed. ..
  46. Pecheritsyna S, Rivkina E, Akimov V, Shcherbakova V. Desulfovibrio arcticus sp. nov., a psychrotolerant sulfate-reducing bacterium from a cryopeg. Int J Syst Evol Microbiol. 2012;62:33-7 pubmed publisher
    ..5%). On the basis of genotypic, phenotypic and phylogenetic characteristics, the isolate represents a novel species, for which the name Desulfovibrio arcticus sp. nov. is proposed; the type strain is B15(T) (=VKM B-2367(T)=DSM 21064(T)). ..
  47. Peshenko I, Novoselov V, Evdokimov V, Nikolaev YuV -, Shuvaeva T, Lipkin V, et al. Novel 28-kDa secretory protein from rat olfactory epithelium. FEBS Lett. 1996;381:12-14 pubmed
    ..The 28-kDa protein catalyzed decomposition of the hydrogen peroxide as well as organic hydroperoxides by reduced glutathione and seems to be a member of the glutathion peroxidase family. ..
  48. Gogleva A, Kaparullina E, Doronina N, Trotsenko Y. Methylophilus flavus sp. nov. and Methylophilus luteus sp. nov., aerobic, methylotrophic bacteria associated with plants. Int J Syst Evol Microbiol. 2010;60:2623-8 pubmed publisher
    ..nov. (type strain Ship(T) =DSM 23073(T) =VKM B-2547(T) =CCUG 58411(T)) and Methylophilus luteus sp. nov. (type strain Mim(T) =DSM 22949(T) =VKM B-2548(T) =CCUG 58412(T)) are proposed...
  49. Roytberg M, Ogurtsov A, Shabalina S, Kondrashov A. A hierarchical approach to aligning collinear regions of genomes. Bioinformatics. 2002;18:1673-80 pubmed
    ..This greedy approach constructs a chain of similarities faster than when a chain optimal with respect to some global criterion is sought, and makes more sense biologically. ..
  50. Mikoulinskaia G, Zimin A, Feofanov S, Miroshnikov A. Identification, cloning, and expression of bacteriophage T5 dnk gene encoding a broad specificity deoxyribonucleoside monophosphate kinase (EC 2.7.4.13). Protein Expr Purif. 2004;33:166-75 pubmed
  51. Korepanov A, Gongadze G, Garber M. General stress protein CTC from Bacillus subtilis specifically binds to ribosomal 5S RNA. Biochemistry (Mosc). 2004;69:607-11 pubmed
    ..The protein CTC from A. aeolicus, which is 50 amino acid residues shorter from the N-terminus than the proteins TL5 from T. thermophilus and CTC from B. subtilis, does not interact with 5S rRNA. ..
  52. Fedorov R, Meshcheryakov V, Gongadze G, Fomenkova N, Nevskaya N, Selmer M, et al. Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins. Acta Crystallogr D Biol Crystallogr. 2001;57:968-76 pubmed
    ..The hydrophobic cores which stabilize both TL5 domains are highly conserved in CTC proteins. Thus, all CTC proteins may fold with a topology close to that of TL5...
  53. Perederina A, Nevskaya N, Nikonov O, Nikulin A, Dumas P, Yao M, et al. Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex. RNA. 2002;8:1548-57 pubmed
    ..This protein/RNA interface simulates the interaction of L5 with 23S rRNA observed in the Haloarcula marismortui 50S ribosomal subunit...
  54. Doronina N, Ivanova E, Trotsenko Y, Pshenichnikova A, Kalinina E, Shvets V. Methylophilus quaylei sp. nov., a new aerobic obligately methylotrophic bacterium. Syst Appl Microbiol. 2005;28:303-9 pubmed
  55. Kaliman A, Kryukov V, Bayev A. The nucleotide sequence of the region of bacteriophage T5 early genes D10-D15. Nucleic Acids Res. 1988;16:10353-4 pubmed
  56. Mokrishcheva M, Solonin A, Nikitin D. Fused eco29kIR- and M genes coding for a fully functional hybrid polypeptide as a model of molecular evolution of restriction-modification systems. BMC Evol Biol. 2011;11:35 pubmed publisher
    ..Lastly, this study demonstrates that protein fusion may change biochemical properties of the involved enzymes, thus giving a starting point for their further evolutionary divergence. ..
  57. Gushchina L, Gabdulkhakov A, Nikonov S, Filimonov V. High-resolution crystal structure of spectrin SH3 domain fused with a proline-rich peptide. J Biomol Struct Dyn. 2011;29:485-95 pubmed
    ..The domains are related by the two-fold non-crystallographic axis and the ligand lies in two opposite orientations with respect to the conservative binding sites of SH3 domains. ..
  58. Doronina N, Darmaeva T, Trotsenko Y. Methylophaga natronica sp. nov., a new alkaliphilic and moderately halophilic, restricted-facultatively methylotrophic bacterium from soda lake of the Southern Transbaikal region. Syst Appl Microbiol. 2003;26:382-9 pubmed
  59. Andreeva N, Kulakovskaya T, Kulaev I. High molecular mass exopolyphosphatase from the cytosol of the yeast Saccharomyces cerevisiae is encoded by the PPN1 gene. Biochemistry (Mosc). 2006;71:975-7 pubmed
    ..The enzyme under study releases orthophosphate from the very beginning of polyphosphate hydrolysis. ..
  60. Tishchenko S, Gabdulkhakov A, Tin U, Kostareva O, Lin C, Katanaev V. Crystallization and preliminary X-ray diffraction studies of Drosophila melanogaster G?o-subunit of heterotrimeric G protein in complex with the RGS domain of CG5036. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013;69:61-4 pubmed publisher
    ..Diffraction data were collected to 2.0?Å resolution using a synchrotron-radiation source. ..
  61. Yakhnin A, Vorozheykina D, Matvienko N. Nucleotide sequence of the Thermus thermophilus HB8 gene coding for elongation factor G. Nucleic Acids Res. 1989;17:8863 pubmed
  62. Okon M, Bray P, Vucelic D. 1H NMR assignments and secondary structure of human beta 2-microglobulin in solution. Biochemistry. 1992;31:8906-15 pubmed
    ..No evidence for any regular helical structure is found. Amide proton-solvent-exchange rate constants and 3JHN alpha coupling constants are evaluated. ..