Experts and Doctors on software in Rennes, Brittany, France

Summary

Locale: Rennes, Brittany, France
Topic: software

Top Publications

  1. Barac h V, Schleyer T. Dental concepts in the Unified Medical Language System. Quintessence Int. 2002;33:69-74 pubmed
    ..For no match, the matching frequencies were significantly different (P < .001). The Unified Medical Language System may be a comprehensive source of terms suitable for various representation requirements in dentistry. ..
  2. Sevin E, Barloy Hubler F. RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes. Genome Biol. 2007;8:R155 pubmed
    ..The tool successfully confirmed all reported TA systems, and spotted new putative loci upon screening of sequenced genomes. RASTA-Bacteria is publicly available at http://genoweb.univ-rennes1.fr/duals/RASTA-Bacteria. ..
  3. Thybert D, Avner S, Lucchetti Miganeh C, Chéron A, Barloy Hubler F. OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes. BMC Genomics. 2008;9:637 pubmed publisher
    ..OxyGene is freely available at: http://www.umr6026.univ-rennes1.fr/english/home/research/basic/software. ..
  4. Derrien T, Thézé J, Vaysse A, Andre C, Ostrander E, Galibert F, et al. Revisiting the missing protein-coding gene catalog of the domestic dog. BMC Genomics. 2009;10:62 pubmed publisher
  5. Guziolowski C, Bourde A, Moreews F, Siegel A. BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks. BMC Genomics. 2009;10:244 pubmed publisher
    ..As a main feature, the plugin guides further investigation regarding a system by highlighting regions in the network that are not accurately described and merit specific study. ..
  6. Gruel J, Leborgne M, LeMeur N, Theret N. Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns. BMC Bioinformatics. 2011;12:365 pubmed publisher
    ..Using unbiased clustering of genes, Simple Shared Motifs analysis constitutes an original contribution to provide a clearer definition of expression networks. ..
  7. Peterlongo P, Chikhi R. Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer. BMC Bioinformatics. 2012;13:48 pubmed publisher
    ..As indexing is localized, the memory footprint of Mapsembler is negligible. Mapsembler is released under the CeCILL license and can be freely downloaded from http://alcovna.genouest.org/mapsembler/. ..
  8. Sallou O, Bretaudeau A, Roult A. Seqcrawler: biological data indexing and browsing platform. BMC Bioinformatics. 2012;13:175 pubmed publisher
    ..The solution scales easily and can also provide a high availability infrastructure. ..
  9. Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, et al. Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software. Nat Methods. 2017;14:1063-1071 pubmed publisher
    ..The CAMI results highlight current challenges but also provide a roadmap for software selection to answer specific research questions...

More Information

Publications11

  1. Bayat S, Cuggia M, Kessler M, Briancon S, Le Beux P, Frimat L. Modelling access to renal transplantation waiting list in a French healthcare network using a Bayesian method. Stud Health Technol Inform. 2008;136:605-10 pubmed
    ..Moreover theses approaches constitute an essential step toward a decisional information system for healthcare networks. ..
  2. Goudenège D, Avner S, Lucchetti Miganeh C, Barloy Hubler F. CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources. BMC Microbiol. 2010;10:88 pubmed publisher
    ..CoBaltDB is available at http://www.umr6026.univ-rennes1.fr/english/home/research/basic/software/cobalten. ..