Experts and Doctors on bacterial genome in Rennes, Brittany, France
Locale: Rennes, Brittany, France
Topic: bacterial genome
Sevin E, Barloy Hubler F. RASTA-Bacteria: a web-based tool for identifying toxin-antitoxin loci in prokaryotes. Genome Biol. 2007;8:R155 pubmed
..The tool successfully confirmed all reported TA systems, and spotted new putative loci upon screening of sequenced genomes. RASTA-Bacteria is publicly available at http://genoweb.univ-rennes1.fr/duals/RASTA-Bacteria. ..
Thybert D, Avner S, Lucchetti Miganeh C, Chéron A, Barloy Hubler F. OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes. BMC Genomics. 2008;9:637 pubmed publisher
..OxyGene is freely available at: http://www.umr6026.univ-rennes1.fr/english/home/research/basic/software. ..
Perez Chaparro P, Rouillon A, Minet J, Lafaurie G, Bonnaure Mallet M. fimA genotypes and PFGE profile patterns in Porphyromonas gingivalis isolates from subjects with periodontitis. Oral Microbiol Immunol. 2009;24:423-6 pubmed publisher
..To compare these techniques, we genotyped P. gingivalis clinical isolates as to (i) their fimA type and (ii) their whole genome restriction profile (PFGE analysis)...
Falentin H, Deutsch S, Jan G, Loux V, Thierry A, Parayre S, et al
. The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications. PLoS ONE. 2010;5:e11748 pubmed publisher
..With the exception of its ability to degrade lactose, P. freudenreichii seems poorly adapted to dairy niches. This genome annotation opens up new prospects for the understanding of the P. freudenreichii probiotic activity. ..