Experts and Doctors on molecular sequence data in France


Locale: France
Topic: molecular sequence data

Top Publications

  1. Bouillaud F, Raimbault S, Ricquier D. The gene for rat uncoupling protein: complete sequence, structure of primary transcript and evolutionary relationship between exons. Biochem Biophys Res Commun. 1988;157:783-92 pubmed
    ..Evidence for homology between Uncoupling Protein and Neurospora crassa ADP/ATP carrier at the gene level was also noticed. ..
  2. Yanicostas C, Ferrer P, Vincent A, Lepesant J. Separate cis-regulatory sequences control expression of serendipity beta and janus A, two immediately adjacent Drosophila genes. Mol Gen Genet. 1995;246:549-60 pubmed
    ..Together these data indicate that in spite of the physical proximity of the jan A and sry beta genes, their transcription is regulated by separate cis-acting sequences. ..
  3. Chotteau Lelievre A, Desbiens X, Pelczar H, Defossez P, de Launoit Y. Differential expression patterns of the PEA3 group transcription factors through murine embryonic development. Oncogene. 1997;15:937-52 pubmed
  4. Praillet T, Reverchon S, Robert Baudouy J, Nasser W. The PecM protein is necessary for the DNA-binding capacity of the PecS repressor, one of the regulators of virulence-factor synthesis in Erwinia chrysanthemi. FEMS Microbiol Lett. 1997;154:265-70 pubmed
    ..chrysanthemi or by E. coli, reveals similar affinities. Thus, in E. coli, there is likely to be at least one other PecM-like protein able to cross-react with the E. chrysanthemi PecS protein. ..
  5. Gautier T, Berges T, Tollervey D, Hurt E. Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis. Mol Cell Biol. 1997;17:7088-98 pubmed
    ..Well-conserved homologs are present in a range of organisms, including humans (52% identity between human hNop56p and yeast Nop56p), suggesting that these complexes have been conserved in evolution. ..
  6. Loulergue C, Lebrun M, Briat J. Expression cloning in Fe2+ transport defective yeast of a novel maize MYC transcription factor. Gene. 1998;225:47-57 pubmed
    ..The amount of 7E mRNA increased, in response to iron starvation, by 20 and 40% in roots and leaves, respectively. The relationship between iron metabolism and myc expression in animal cells is discussed. ..
  7. Vaudin P, Delanoue R, Davidson I, Silber J, Zider A. TONDU (TDU), a novel human protein related to the product of vestigial (vg) gene of Drosophila melanogaster interacts with vertebrate TEF factors and substitutes for Vg function in wing formation. Development. 1999;126:4807-16 pubmed
    ..Expression of TDU in Drosophila by means of the UAS-GAL4 system shows that this human protein can substitute for Vg in wing formation. We propose that TDU is a specific coactivator for the mammalian TEFs. ..
  8. Cau J, Faure S, Vigneron S, Labbe J, Delsert C, Morin N. Regulation of Xenopus p21-activated kinase (X-PAK2) by Cdc42 and maturation-promoting factor controls Xenopus oocyte maturation. J Biol Chem. 2000;275:2367-75 pubmed
    ..We hypothesize that the X-PAK2/Cdc42 pathway could link p34(cdc2) activity to the major cytoskeleton rearrangements leading to spindle migration and anchorage to the animal pole cortex. ..
  9. Roux M, Martínez Maza R, Le Goff A, Lopez Corcuera B, Aragon C, Supplisson S. The glial and the neuronal glycine transporters differ in their reactivity to sulfhydryl reagents. J Biol Chem. 2001;276:17699-705 pubmed
    ..Together, these results indicate that EL1 conformation differs between GlyT1b and GlyT2a and is modified by substrate binding and translocation. ..

More Information

Publications873 found, 100 shown here

  1. Giraud S, Bienvenu F, Avril S, Gascan H, Heery D, Coqueret O. Functional interaction of STAT3 transcription factor with the coactivator NcoA/SRC1a. J Biol Chem. 2002;277:8004-11 pubmed
    ..Taken together, these data suggest that CBP/p300 and NcoA/SRC1a may function in a common pathway to regulate STAT3 transcriptional activity. ..
  2. Budayova Spano M, Lacroix M, Thielens N, Arlaud G, Fontecilla Camps J, Gaboriaud C. The crystal structure of the zymogen catalytic domain of complement protease C1r reveals that a disruptive mechanical stress is required to trigger activation of the C1 complex. EMBO J. 2002;21:231-9 pubmed
  3. Erkner A, Roure A, Charroux B, Delaage M, Holway N, Coré N, et al. Grunge, related to human Atrophin-like proteins, has multiple functions in Drosophila development. Development. 2002;129:1119-29 pubmed
    ..Grunge has other regulatory functions in the leg, including the patterning of ventral parts along the entire proximodistal axis and the proper spacing of bristles in all regions. ..
  4. Vachette P, Dainese E, Vasyliev V, Di Muro P, Beltramini M, Svergun D, et al. A key structural role for active site type 3 copper ions in human ceruloplasmin. J Biol Chem. 2002;277:40823-31 pubmed
    ..Our results demonstrate that, beyond catalytic activity, the three-copper cluster at the N-terminal-C-terminal interface plays a crucial role in the structural stability of human ceruloplasmin. ..
  5. Lattard V, Longin Sauvageon C, Benoit E. Cloning, sequencing and tissue distribution of rat flavin-containing monooxygenase 4: two different forms are produced by tissue-specific alternative splicing. Mol Pharmacol. 2003;63:253-61 pubmed
    ..By Western blotting using the two different forms of FMO4 antibodies, a long FMO4 protein was detected in the rat kidney, whereas in the rat brain, only the short form of FMO4 was observed. ..
  6. Minko K, Bollerot K, Drevon C, Hallais M, Jaffredo T. From mesoderm to blood islands: patterns of key molecules during yolk sac erythropoiesis. Gene Expr Patterns. 2003;3:261-72 pubmed
    ..VEGF-R2 is down-regulated in hemopoietic cells prior to GATA-2, SCL/tal-1, Lmo2 and GATA-1 in erythroblasts. ..
  7. Raoult D, Ogata H, Audic S, Robert C, Suhre K, Drancourt M, et al. Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome. Genome Res. 2003;13:1800-9 pubmed
    ..The analysis of the genome sequence of this previously largely unknown human pathogen is now guiding the development of molecular diagnostic tools and more convenient culture conditions. ..
  8. Salaun B, de Saint Vis B, Clair Moninot V, Pin J, Barthélemy Dubois C, Kissenpfennig A, et al. Cloning and characterization of the mouse homologue of the human dendritic cell maturation marker CD208/DC-LAMP. Eur J Immunol. 2003;33:2619-29 pubmed
    ..In conclusion, mouse DC-LAMP is not a marker of mature mouse DC and this observation raises new questions regarding the role of human DC-LAMP in human DC. ..
  9. Picardeau M, Bauby H, Saint Girons I. Genetic evidence for the existence of two pathways for the biosynthesis of methionine in the Leptospira spp. FEMS Microbiol Lett. 2003;225:257-62 pubmed
    ..In addition, a L. interrogans gene, called metZ, was found to complement an Escherichia coli metB mutant, further suggesting that the transsulfuration pathway is also present in Leptospira spp. ..
  10. Brochier C, López García P, Moreira D. Horizontal gene transfer and archaeal origin of deoxyhypusine synthase homologous genes in bacteria. Gene. 2004;330:169-76 pubmed
    ..This is exemplified by the fact that, in archaea, the complex evolutionary history of the DHS is not paralleled by that of the IF-5A, indicating that these proteins do not follow a perfect co-evolution. ..
  11. Meurice G, Deborde C, Jacob D, Falentin H, Boyaval P, Dimova D. In silico exploration of the fructose-6-phosphate phosphorylation step in glycolysis: genomic evidence of the coexistence of an atypical ATP-dependent along with a PPi-dependent phosphofructokinase in Propionibacterium freudenreichii subsp. shermanii. In Silico Biol. 2004;4:517-28 pubmed
    ..2001]. The possible significance of the co-existence of these two PFKs and their importance for the regulation of glycolytic pathway flux in P. shermanii is discussed...
  12. Bouchut A, Roger E, Coustau C, Gourbal B, Mitta G. Compatibility in the Biomphalaria glabrata/Echinostoma caproni model: potential involvement of adhesion genes. Int J Parasitol. 2006;36:175-84 pubmed publisher
    ..This system may prevent hemocyte migration towards the parasite larvae and therefore facilitate parasite settlement in susceptible snails...
  13. Vivares D, Arnoux P, Pignol D. A papain-like enzyme at work: native and acyl-enzyme intermediate structures in phytochelatin synthesis. Proc Natl Acad Sci U S A. 2005;102:18848-53 pubmed
    ..GSH hydrolase and PCS activities of the enzyme are discussed in the light of both structures. ..
  14. Gautron J, Murayama E, Vignal A, Morisson M, McKee M, Réhault S, et al. Cloning of ovocalyxin-36, a novel chicken eggshell protein related to lipopolysaccharide-binding proteins, bactericidal permeability-increasing proteins, and plunc family proteins. J Biol Chem. 2007;282:5273-86 pubmed
    ..OCX-36 may therefore participate in natural defense mechanisms that keep the egg free of pathogens. ..
  15. Meziane Cherif D, Lambert T, Dupêchez M, Courvalin P, Galimand M. Genetic and biochemical characterization of OXA-63, a new class D beta-lactamase from Brachyspira pilosicoli BM4442. Antimicrob Agents Chemother. 2008;52:1264-8 pubmed publisher
    ..16 microM) and exhibited low susceptibility to NaCl (IC50 of >2 M). OXA-63 is the first DBL described for the anaerobic spirochete B. pilosicoli. ..
  16. Girlich D, Kolb A, Naas T, Nordmann P. Characterization of regulatory element Rp3 of regulation of beta-lactamases from Ralstonia pickettii. FEMS Microbiol Lett. 2009;301:50-6 pubmed publisher
    ..This result indicates that RP3 is most probably only one component of a novel regulatory system involved in the expression of beta-lactamases in R. pickettii. ..
  17. Khelaifia S, Fardeau M, Pradel N, Aussignargues C, Garel M, Tamburini C, et al. Desulfovibrio piezophilus sp. nov., a piezophilic, sulfate-reducing bacterium isolated from wood falls in the Mediterranean Sea. Int J Syst Evol Microbiol. 2011;61:2706-11 pubmed publisher
  18. Lino Cardenas C, Devos A, Touré A, Cardenas Garcia J, Kenani A, Migot Nabias F, et al. Arachidonic acid ?-hydroxylase CYP4A11: inter-ethnic variations in the 8590T>C loss-of-function variant. Mol Biol Rep. 2012;39:1503-8 pubmed publisher
    ..These findings provide data for further studies that investigate the potential association of CYP4A11 (8590T>C) variant with an incidence of hypertension genesis in respect of ethnicity. ..
  19. Augustin A, Spenlehauer C, Dumond H, Menissier de Murcia J, Piel M, Schmit A, et al. PARP-3 localizes preferentially to the daughter centriole and interferes with the G1/S cell cycle progression. J Cell Sci. 2003;116:1551-62 pubmed
    ..PARP-1 also resides for part of the cell cycle in the centrosome and interacts with hPARP-3. The presence of both PARP-1 and PARP-3 at the centrosome may link the DNA damage surveillance network to the mitotic fidelity checkpoint. ..
  20. Merabet S, Kambris Z, Capovilla M, Bérenger H, Pradel J, Graba Y. The hexapeptide and linker regions of the AbdA Hox protein regulate its activating and repressive functions. Dev Cell. 2003;4:761-8 pubmed
    ..Our in vivo data thus reveal functions not previously anticipated from in vitro analyses for the hexapeptide motif in the regulation of Hox activity. ..
  21. Egloff M, Malet H, Putics A, Heinonen M, Dutartre H, Frangeul A, et al. Structural and functional basis for ADP-ribose and poly(ADP-ribose) binding by viral macro domains. J Virol. 2006;80:8493-502 pubmed
    ..Collectively, these results suggest to further evaluate the role of viral macro domains in host response to viral infection. ..
  22. Kainov D, Cura V, Vitorino M, Nierengarten H, Poussin P, Kieffer B, et al. Structure determination of the minimal complex between Tfb5 and Tfb2, two subunits of the yeast transcription/DNA-repair factor TFIIH: a retrospective study. Acta Crystallogr D Biol Crystallogr. 2010;66:745-55 pubmed publisher
    ..A detailed analysis illustrates how variation in domain boundaries influences crystal packing and quality. ..
  23. Emmerich J, Chadeuf G, Alhenc Gelas M, Gouault Heilman M, Toulon P, Fiessinger J, et al. Molecular basis of antithrombin type I deficiency: the first large in-frame deletion and two novel mutations in exon 6. Thromb Haemost. 1994;72:534-9 pubmed
    ..These results confirm that human gene mutations are not random events but are strongly influenced by DNA flanking sequences. ..
  24. Volland C, Urban Grimal D, Geraud G, Haguenauer Tsapis R. Endocytosis and degradation of the yeast uracil permease under adverse conditions. J Biol Chem. 1994;269:9833-41 pubmed
    ..We have yet to determine whether adverse conditions enhance permease endocytosis and subsequent degradation or divert internalized uracil permease from a recycling to a degradative pathway. ..
  25. vom Baur E, Zechel C, Heery D, Heine M, Garnier J, Vivat V, et al. Differential ligand-dependent interactions between the AF-2 activating domain of nuclear receptors and the putative transcriptional intermediary factors mSUG1 and TIF1. EMBO J. 1996;15:110-24 pubmed
    ..We discuss the possibility that mSUG1 and TIF1 may mediate the transcriptional activity of the AF-2 of nuclear receptors through different mechanisms. ..
  26. Favrel P, Mathieu M. Molecular cloning of a cDNA encoding the precursor of Ala-Pro-Gly-Trp amide-related neuropeptides from the bivalve mollusc Mytilus edulis. Neurosci Lett. 1996;205:210-4 pubmed
    ..In situ hybridisation showed that the gene encoding this precursor is expressed in discrete neurons within the three ganglia of the central nervous system. ..
  27. Jagla K, Jagla T, Heitzler P, Dretzen G, Bellard F, Bellard M. ladybird, a tandem of homeobox genes that maintain late wingless expression in terminal and dorsal epidermis of the Drosophila embryo. Development. 1997;124:91-100 pubmed
    ..Lack of late wingless expression and anal plate formation can be rescued with the use of a heat-shock-ladybird transgene. ..
  28. Apoil P, Blancher A. Sequences and evolution of mammalian RH gene transcripts and proteins. Immunogenetics. 1999;49:15-25 pubmed
    ..The cDNA sequences were compared with those previously reported in human, nonhuman primates, and cattle. The time of coalescence of mammalian Rh cDNA sequences was estimated by phylogenetic analysis to be 100 million years. ..
  29. Di Bartolo V, Mege D, Germain V, Pelosi M, Dufour E, Michel F, et al. Tyrosine 319, a newly identified phosphorylation site of ZAP-70, plays a critical role in T cell antigen receptor signaling. J Biol Chem. 1999;274:6285-94 pubmed
    ..Collectively, our data reveal the pivotal role of Tyr319 phosphorylation in the positive regulation of ZAP-70 and in TCR-mediated signaling. ..
  30. Pereon Y, Demolombe S, Baro I, Drouin E, Charpentier F, Escande D. Differential expression of KvLQT1 isoforms across the human ventricular wall. Am J Physiol Heart Circ Physiol. 2000;278:H1908-15 pubmed
  31. Delahodde A, Pandjaitan R, Corral Debrinski M, Jacq C. Pse1/Kap121-dependent nuclear localization of the major yeast multidrug resistance (MDR) transcription factor Pdr1. Mol Microbiol. 2001;39:304-12 pubmed
    ..Together, these new observations underscore the diversity of cellular processes that address to the nucleus two very similar transcription factors involved in the control of the same phenotype, thus securing their function in the cell. ..
  32. Landais I, Pommet J, Mita K, Nohata J, Gimenez S, Fournier P, et al. Characterization of the cDNA encoding the 90 kDa heat-shock protein in the Lepidoptera Bombyx mori and Spodoptera frugiperda. Gene. 2001;271:223-31 pubmed
    ..Transcriptional analysis performed in S. frugiperda shows that the induction of the hsp90 gene only occurs 14 degrees C above physiological growth conditions (42 degrees C)...
  33. Franzetti B, Schoehn G, Hernandez J, Jaquinod M, Ruigrok R, Zaccai G. Tetrahedral aminopeptidase: a novel large protease complex from archaea. EMBO J. 2002;21:2132-8 pubmed publisher
    ..This architecture is different from that of all the proteolytic complexes described to date that are made up by rings or barrels with a single central channel and only two openings...
  34. Le Guiner C, Gesnel M, Breathnach R. TIA-1 or TIAR is required for DT40 cell viability. J Biol Chem. 2003;278:10465-76 pubmed
    ..The TIA-1/TIAR responsiveness of these alternative tiar exons is likely to be of physiological importance for controlling TIAR levels. ..
  35. Gardan L, Stead D, Dauga C, Gillis M. Acidovorax valerianellae sp. nov., a novel pathogen of lamb's lettuce [Valerianella locusta (L.) Laterr]. Int J Syst Evol Microbiol. 2003;53:795-800 pubmed
    ..The name Acidovorax valerianellae sp. nov. is proposed for this novel taxon of phytopathogenic bacteria. The type strain is strain CFBP 4730(T) (= NCPPB 4283(T))...
  36. Bury N, Sturm A, Le Rouzic P, Lethimonier C, Ducouret B, Guiguen Y, et al. Evidence for two distinct functional glucocorticoid receptors in teleost fish. J Mol Endocrinol. 2003;31:141-56 pubmed
    ..Altogether, these results indicate that these two GR sequences encode for two functionally distinct GRs acting as ligand-inducible transcription factors in rainbow trout...
  37. Héchard C, Grépinet O, Rodolakis A. Molecular cloning of the Chlamydophila abortus groEL gene and evaluation of its protective efficacy in a murine model by genetic vaccination. J Med Microbiol. 2004;53:861-8 pubmed
    ..abortus infectivity. Although the DNA vaccine induced a delayed-type hypersensitivity response, it failed to elicit an efficient cellular immune response since the mice were not protected against bacterial challenge. ..
  38. Poirel L, Brinas L, Fortineau N, Nordmann P. Integron-encoded GES-type extended-spectrum beta-lactamase with increased activity toward aztreonam in Pseudomonas aeruginosa. Antimicrob Agents Chemother. 2005;49:3593-7 pubmed
    ..The bla(GES-9) gene was located inside a class 1 integron structure containing two copies of a novel insertion sequence belonging to the IS1111 family. ..
  39. Fieulaine S, Juillan Binard C, Serero A, Dardel F, Giglione C, Meinnel T, et al. The crystal structure of mitochondrial (Type 1A) peptide deformylase provides clear guidelines for the design of inhibitors specific for the bacterial forms. J Biol Chem. 2005;280:42315-24 pubmed
    ..Finally, these modified substrate binding pockets modify the position of the substrate in the active site. These differences provide guidelines for the design of bacterial PDF inhibitors that will not target mitochondrial PDFs. ..
  40. Gaudriault S, Duchaud E, Lanois A, Canoy A, Bourot S, DeRose R, et al. Whole-genome comparison between Photorhabdus strains to identify genomic regions involved in the specificity of nematode interaction. J Bacteriol. 2006;188:809-14 pubmed
    ..We describe 31 regions belonging to the Photorhabdus flexible gene pool. Distribution analysis of regions among the Photorhabdus genus identified loci possibly involved in nematode specificity. ..
  41. Marie D, Zhu F, Balague V, Ras J, Vaulot D. Eukaryotic picoplankton communities of the Mediterranean Sea in summer assessed by molecular approaches (DGGE, TTGE, QPCR). FEMS Microbiol Ecol. 2006;55:403-15 pubmed
    ..Of the three genera assessed, Bathycoccus appeared as the most abundant, forming localized maxima at depth. ..
  42. Simon Chazottes D, Tutois S, Kuehn M, Evans M, Bourgade F, Cook S, et al. Mutations in the gene encoding the low-density lipoprotein receptor LRP4 cause abnormal limb development in the mouse. Genomics. 2006;87:673-7 pubmed
  43. Frutos R, Viari A, Ferraz C, Bensaid A, Morgat A, Boyer F, et al. Comparative genomics of three strains of Ehrlichia ruminantium: a review. Ann N Y Acad Sci. 2006;1081:417-33 pubmed
    ..These repeats are at the origin of an active process, specific to E. ruminantium, of genome expansion/contraction based on the addition or removal of tandem units...
  44. Rakotobe D, Violot S, Hong S, Gouet P, Boulanger P. Mapping of immunogenic and protein-interacting regions at the surface of the seven-bladed beta-propeller domain of the HIV-1 cellular interactor EED. Virol J. 2008;5:32 pubmed publisher
  45. Gholami A, Kassis R, Réal E, Delmas O, Guadagnini S, Larrous F, et al. Mitochondrial dysfunction in lyssavirus-induced apoptosis. J Virol. 2008;82:4774-84 pubmed publisher
    ..As expected, the reverse mutations, R77K and E81N, introduced in M-THA induce a phenotype similar to that due to M-MOK. These features indicate a novel mechanism for energy depletion during lyssavirus-induced apoptosis...
  46. van der Aa L, Levraud J, Yahmi M, Lauret E, Briolat V, Herbomel P, et al. A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish. BMC Biol. 2009;7:7 pubmed publisher
    ..The diversity, evolution, and features of finTRIMs suggest an important role in fish innate immunity; this would make them the first TRIMs involved in immunity identified outside mammals. ..
  47. Alsafadi S, Tourpin S, Andre F, Vassal G, Ahomadegbe J. P53 family: at the crossroads in cancer therapy. Curr Med Chem. 2009;16:4328-44 pubmed
    ..It will therefore focus on recent findings in the search for pathways and molecules capable of modulating p53 family protein activities and restoring response to cancer therapy, particularly in tumors bearing p53 mutations. ..
  48. Wege S, Jossier M, Filleur S, Thomine S, Barbier Brygoo H, Gambale F, et al. The proline 160 in the selectivity filter of the Arabidopsis NO(3)(-)/H(+) exchanger AtCLCa is essential for nitrate accumulation in planta. Plant J. 2010;63:861-9 pubmed publisher
    ..Our results confirm the significance of this amino acid in the conserved selectivity filter of CLC proteins and highlight the importance of the proline in AtCLCa for nitrate metabolism in Arabidopsis...
  49. Cruaud A, Jabbour Zahab R, Genson G, Kjellberg F, Kobmoo N, van Noort S, et al. Phylogeny and evolution of life-history strategies in the Sycophaginae non-pollinating fig wasps (Hymenoptera, Chalcidoidea). BMC Evol Biol. 2011;11:178 pubmed publisher
    ..However, some species are exceptional in that they lay few eggs but exhibit apterous males, which we hypothesize could be due to other selective pressures selecting against the re-appearance of winged morphs. ..
  50. Roongsattham P, Morcillo F, Jantasuriyarat C, Pizot M, Moussu S, Jayaweera D, et al. Temporal and spatial expression of polygalacturonase gene family members reveals divergent regulation during fleshy fruit ripening and abscission in the monocot species oil palm. BMC Plant Biol. 2012;12:150 pubmed publisher
    ..Furthermore, phylogenetic analysis of EgPG4 with PGs from other species suggests some conservation, but also diversification has occurred between monocots and eudicots, in particular between dry and fleshy fruit species. ..
  51. Meslier V, Loux V, Renault P. Genome sequence of Leuconostoc pseudomesenteroides strain 4882, isolated from a dairy starter culture. J Bacteriol. 2012;194:6637 pubmed publisher
    ..Here, we report the first genome sequence of a dairy strain of Leuconostoc pseudomesenteroides, which is 2 Mb...
  52. Paris J, Le Guellec R, Couturier A, Le Guellec K, Omilli F, Camonis J, et al. Cloning by differential screening of a Xenopus cDNA coding for a protein highly homologous to cdc2. Proc Natl Acad Sci U S A. 1991;88:1039-43 pubmed
    ..At fertilization the RNA loses its poly(A) tail and at the same time leaves the polyribosomes. ..
  53. Furet J, Mercier J, Soulier S, Gaye P, Hue Delahaie D, Vilotte J. Nucleotide sequence of ovine kappa-casein cDNA. Nucleic Acids Res. 1990;18:5286 pubmed
  54. Loubbardi A, Marcireau C, Karst F, Guilloton M. Sterol uptake induced by an impairment of pyridoxal phosphate synthesis in Saccharomyces cerevisiae: cloning and sequencing of the PDX3 gene encoding pyridoxine (pyridoxamine) phosphate oxidase. J Bacteriol. 1995;177:1817-23 pubmed
    ..Several putative Gcn4p binding sequences are present in the PDX3 promoter region, leading to the assumption that transcription of this gene is under the general control of nitrogen metabolism. ..
  55. Charrier V, Buckley E, Parsonage D, Galinier A, Darbon E, Jaquinod M, et al. Cloning and sequencing of two enterococcal glpK genes and regulation of the encoded glycerol kinases by phosphoenolpyruvate-dependent, phosphotransferase system-catalyzed phosphorylation of a single histidyl residue. J Biol Chem. 1997;272:14166-74 pubmed
    ..Fructose 1,6-bisphosphate was found to inhibit E. casseliflavus glycerol kinase activity. However, neither EIIAGlc from E. coli nor the EIIAGlc domain of Bacillus subtilis had an inhibitory effect on glycerol kinase of E. casseliflavus...
  56. Cappellen D, De Oliveira C, Ricol D, de Medina S, Bourdin J, Sastre Garau X, et al. Frequent activating mutations of FGFR3 in human bladder and cervix carcinomas. Nat Genet. 1999;23:18-20 pubmed
  57. Dubois L, Vincent A. The COE--Collier/Olf1/EBF--transcription factors: structural conservation and diversity of developmental functions. Mech Dev. 2001;108:3-12 pubmed
    ..We also discuss the existence of an evolutionarily conserved pathway linking Notch signalling and COE regulatory functions in various developmental decisions. ..
  58. Valladeau J, Clair Moninot V, Dezutter Dambuyant C, Pin J, Kissenpfennig A, Mattei M, et al. Identification of mouse langerin/CD207 in Langerhans cells and some dendritic cells of lymphoid tissues. J Immunol. 2002;168:782-92 pubmed
    ..Our findings should facilitate further characterization of mouse LC, and provide insight into a plasticity of dendritic cell organelles which may have important functional consequences. ..
  59. Menuet A, Le Page Y, Torres O, Kern L, Kah O, Pakdel F. Analysis of the estrogen regulation of the zebrafish estrogen receptor (ER) reveals distinct effects of ERalpha, ERbeta1 and ERbeta2. J Mol Endocrinol. 2004;32:975-86 pubmed
    ..Altogether, these results indicated that the two ERbeta forms recently characterized in teleost fish could have partially distinct and not redundant functions. ..
  60. Henry S, Baudoin E, López Gutierrez J, Martin Laurent F, Brauman A, Philippot L. Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR. J Microbiol Methods. 2004;59:327-35 pubmed
    ..However, phylogenetic analysis showed that most of environmental sequences are not related to nirK from cultivated denitrifiers...
  61. Pedruzzi E, Guichard C, Ollivier V, Driss F, Fay M, Prunet C, et al. NAD(P)H oxidase Nox-4 mediates 7-ketocholesterol-induced endoplasmic reticulum stress and apoptosis in human aortic smooth muscle cells. Mol Cell Biol. 2004;24:10703-17 pubmed
    ..These findings demonstrate that Nox-4 plays a key role in 7-Kchol-induced SMC death, which is consistent with the hypothesis that Nox-4/oxysterols are involved in the pathogenesis of atherosclerosis. ..
  62. Mouratou B, Biou V, Joubert A, Cohen J, Shields D, Geldner N, et al. The domain architecture of large guanine nucleotide exchange factors for the small GTP-binding protein Arf. BMC Genomics. 2005;6:20 pubmed
    ..Our identification of a conserved modular architecture provides a background for future functional investigation of non-catalytic domains. ..
  63. Braquart Varnier C, Greve P, Felix C, Martin G. Bacteriophage WO in Wolbachia infecting terrestrial isopods. Biochem Biophys Res Commun. 2005;337:580-5 pubmed
    ..The phage of Wolbachia infecting Armadillidium vulgare seems to be not active, unlike other phages WO previously described in arthropods...
  64. Ouzzine M, Barre L, Netter P, Magdalou J, Fournel Gigleux S. Role of the carboxyl terminal stop transfer sequence of UGT1A6 membrane protein in ER targeting and translocation of upstream lumenal domain. FEBS Lett. 2006;580:1953-8 pubmed
    ..We showed that total or partial deletion of the stop transfer sequence of UGT1A6 severely impaired enzyme activity highlighting its importance in both membrane assembly and function. ..
  65. Boyault C, Gilquin B, Zhang Y, Rybin V, Garman E, Meyer Klaucke W, et al. HDAC6-p97/VCP controlled polyubiquitin chain turnover. EMBO J. 2006;25:3357-66 pubmed
  66. Michel C, Pelletier C, Boussaha M, Douet D, Lautraite A, Tailliez P. Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis. Appl Environ Microbiol. 2007;73:2947-55 pubmed
    ..The significance for fish populations and fish food processing of three or four genetic clusters of uncertain or complex definition, namely, Aerococcus and Enterococcus clusters, should be established more accurately. ..
  67. Svistoonoff S, Creff A, Reymond M, Sigoillot Claude C, Ricaud L, Blanchet A, et al. Root tip contact with low-phosphate media reprograms plant root architecture. Nat Genet. 2007;39:792-6 pubmed
    ..LPR1 and LPR2 encode multicopper oxidases (MCOs), highlighting the essential role of MCOs for plant development. ..
  68. Salerno A, Deletoile A, Lefevre M, Ciznar I, Krovacek K, Grimont P, et al. Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing. J Bacteriol. 2007;189:7808-18 pubmed
    ..Given its robustness and discriminatory power, we recommend MLST as a reference method for population biology studies and epidemiological tracking of P. shigelloides strains...
  69. Gallois J, Charron C, Sánchez F, Pagny G, Houvenaghel M, Moretti A, et al. Single amino acid changes in the turnip mosaic virus viral genome-linked protein (VPg) confer virulence towards Arabidopsis thaliana mutants knocked out for eukaryotic initiation factors eIF(iso)4E and eIF(iso)4G. J Gen Virol. 2010;91:288-93 pubmed publisher
    ..thaliana eIF4Es and VPgs of virulent and avirulent TuMVs was performed. The results suggest that virulent TuMV variants may use an eIF4F-independent pathway. ..
  70. Crost E, Ajandouz E, Villard C, Geraert P, Puigserver A, Fons M. Ruminococcin C, a new anti-Clostridium perfringens bacteriocin produced in the gut by the commensal bacterium Ruminococcus gnavus E1. Biochimie. 2011;93:1487-94 pubmed publisher
    ..This is the first time that a bacteriocin produced in vivo by a human commensal bacterium was purified and characterized...
  71. Potron A, Nordmann P, Poirel L. Characterization of OXA-204, a carbapenem-hydrolyzing class D ?-lactamase from Klebsiella pneumoniae. Antimicrob Agents Chemother. 2013;57:633-6 pubmed publisher
    ..The bla(OXA-204) gene was located on a ca. 150-kb IncA/C-type plasmid, which also carried the bla(CMY-4) gene. The bla(OXA-204) gene was associated with an ISEcp1 element, whereas the bla(OXA-48) genes are usually associated with IS1999...
  72. Tarès S, Arthaud L, Amichot M, Robichon A. Environment exploration and colonization behavior of the pea aphid associated with the expression of the foraging gene. PLoS ONE. 2013;8:e65104 pubmed publisher
    ..Altogether, our results suggest that foraging could act to promote the shift from a sedentary to an exploratory behavior, being thus involved in the behavioral plasticity of the pea aphid. ..
  73. Delorme C, Ehrlich S, Renault P. Histidine biosynthesis genes in Lactococcus lactis subsp. lactis. J Bacteriol. 1992;174:6571-9 pubmed
    ..The remaining ORFs specify products which have no homology with proteins in the EMBL and GenBank data bases. ..
  74. Da Silva P, Jouvensal L, Lamberty M, Bulet P, Caille A, Vovelle F. Solution structure of termicin, an antimicrobial peptide from the termite Pseudacanthotermes spiniger. Protein Sci. 2003;12:438-46 pubmed
    ..The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure as compared to the antibacterial defensins. [SWISS-PROT accession number: Termicin (P82321); PDB accession number: 1MM0.] ..
  75. Rival Gervier S, Thepot D, Jolivet G, Houdebine L. Pig whey acidic protein gene is surrounded by two ubiquitously expressed genes. Biochim Biophys Acta. 2003;1627:7-14 pubmed
    ..The same locus organization was found in the human genome. The region between RAMP3 and CPR2 in the human genome contains a WAP gene-like sequence with several points of mutation which may account for the absence of WAP from human milk. ..
  76. Mammeri H, Nazic H, Naas T, Poirel L, L otard S, Nordmann P. AmpC beta-lactamase in an Escherichia coli clinical isolate confers resistance to expanded-spectrum cephalosporins. Antimicrob Agents Chemother. 2004;48:4050-3 pubmed publisher
    ..This enzyme, exhibiting 14 amino acid substitutions compared to a reference AmpC cephalosporinase of E. coli, hydrolyzed ceftazidime and cefepime significantly...
  77. Gabant G, Auxilien S, Tuszynska I, Locard M, Gajda M, Chaussinand G, et al. THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain. Nucleic Acids Res. 2006;34:2483-94 pubmed
    ..We propose that this mode of interactions may be common to other THUMP-containing enzymes that specifically modify nucleotides in the 3D-core of tRNA...
  78. Quéméneur M, Cébron A, Billard P, Battaglia Brunet F, Garrido F, Leyval C, et al. Population structure and abundance of arsenite-oxidizing bacteria along an arsenic pollution gradient in waters of the upper isle River Basin, France. Appl Environ Microbiol. 2010;76:4566-70 pubmed publisher
    ..The highest aoxB gene densities were found in the most As-polluted oxic surface waters but without any significant correlation with environmental factors. Arsenite oxidizers seem to play a key role in As mobility in As-impacted waters. ..
  79. Chassard C, Delmas E, Robert C, Lawson P, Bernalier Donadille A. Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota. Int J Syst Evol Microbiol. 2012;62:138-43 pubmed publisher
    ..The name Ruminococcus champanellensis sp. nov. is proposed, with 18P13(T) (=DSM 18848(T)=JCM 17042(T)) as the type strain...
  80. Cusack S, Berthet Colominas C, Hartlein M, Nassar N, Leberman R. A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A. Nature. 1990;347:249-55 pubmed
    ..Unlike the three other known synthetase structures, the enzyme contains no classical nucleotide-binding fold, and is the first representative of a second class of aminoacyl-tRNA synthetase structures. ..
  81. Minty A, Chalon P, Derocq J, Dumont X, Guillemot J, Kaghad M, et al. Interleukin-13 is a new human lymphokine regulating inflammatory and immune responses. Nature. 1993;362:248-50 pubmed
    ..Recent mapping of the IL-13 gene shows that it is closely linked to the IL-4 gene on chromosome 5q 23-31 (ref. 4). Interleukin-13 may be critical in regulating inflammatory and immune responses. ..
  82. Vita N, Laurent P, Lefort S, Chalon P, Dumont X, Kaghad M, et al. Cloning and expression of a complementary DNA encoding a high affinity human neurotensin receptor. FEBS Lett. 1993;317:139-42 pubmed
    ..Northern blot analysis using the hNTR cDNA probe indicated a single transcript of 4 kb in the brain, the small intestine and blood mononuclear cells. ..
  83. Bidnenko V, Ehrlich S, Janni re L. In vivo relations between pAMbeta1-encoded type I topoisomerase and plasmid replication. Mol Microbiol. 1998;28:1005-16 pubmed
    ..The possible role of the resulting DNA Pol I arrest in plasmid replication is discussed...
  84. Bonnefoy N, Kermorgant M, Groudinsky O, Dujardin G. The respiratory gene OXA1 has two fission yeast orthologues which together encode a function essential for cellular viability. Mol Microbiol. 2000;35:1135-45 pubmed
    ..This work gives new insight into the dependence of S. pombe viability upon oxa1 function, providing evidence of a connection between petite negativity, a functional respiratory chain and F1F0-ATP synthase complex in S. pombe. ..
  85. Marc F, Weigel P, Legrain C, Almeras Y, Santrot M, Glansdorff N, et al. Characterization and kinetic mechanism of mono- and bifunctional ornithine acetyltransferases from thermophilic microorganisms. Eur J Biochem. 2000;267:5217-26 pubmed
    ..coli. The cleavage occurs between alanine and threonine residues within the highly conserved PXM-ATML motif detected in all available ArgJ sequences...
  86. Giardina T, Perrier J, Puigserver A. The rat kidney acylase I, characterization and molecular cloning. Differences with other acylases I. Eur J Biochem. 2000;267:6249-55 pubmed
    ..The deduced amino-acid sequence showed 93.6% and 87.2% identity with that of the human liver and porcine kidney, respectively. ..
  87. Petropoulos I, Mary J, Perichon M, Friguet B. Rat peptide methionine sulphoxide reductase: cloning of the cDNA, and down-regulation of gene expression and enzyme activity during aging. Biochem J. 2001;355:819-25 pubmed
    ..These results suggest that the down-regulation of PMSR can contribute to the accumulation of oxidized protein that has been associated with the aging process. ..
  88. De E, Basle A, Jaquinod M, Saint N, Mallea M, Molle G, et al. A new mechanism of antibiotic resistance in Enterobacteriaceae induced by a structural modification of the major porin. Mol Microbiol. 2001;41:189-98 pubmed
  89. Benassayag C, Plaza S, Callaerts P, Clements J, Romeo Y, Gehring W, et al. Evidence for a direct functional antagonism of the selector genes proboscipedia and eyeless in Drosophila head development. Development. 2003;130:575-86 pubmed
    ..The direct functional antagonism between PB and EY proteins suggests a novel crosstalk mechanism integrating known selector functions in Drosophila head morphogenesis. ..
  90. Bouneau L, Fischer C, Ozouf Costaz C, Froschauer A, Jaillon O, Coutanceau J, et al. An active non-LTR retrotransposon with tandem structure in the compact genome of the pufferfish Tetraodon nigroviridis. Genome Res. 2003;13:1686-95 pubmed
    ..Homologous recombination between partial tandem sequences eliminating active copies of Zebulon and reducing the size of insertions in intronic and intragenic regions might represent such a mechanism. ..
  91. Barends S, Rudinger Thirion J, Florentz C, Giege R, Pleij C, Kraal B. tRNA-like structure regulates translation of Brome mosaic virus RNA. J Virol. 2004;78:4003-10 pubmed
    ..Intriguingly, a subdomain of the TLS(BMV) could even almost fully restore translation to the original pattern. We discuss here a model with a central and dominant role for the TLS(BMV) during the BMV infection cycle...
  92. Relaix F, Molinari S, Lemonnier M, Schafer B, Buckingham M. The in vivo form of the murine class VI POU protein Emb is larger than that encoded by previously described transcripts. Gene. 2004;333:35-46 pubmed