Experts and Doctors on bacterial proteins in Germany

Summary

Locale: Germany
Topic: bacterial proteins

Top Publications

  1. Kampfenkel K, Braun V. Membrane topology of the Escherichia coli ExbD protein. J Bacteriol. 1992;174:5485-7 pubmed
    ..It is concluded that the only hydrophobic segment of ExbD, encompassing residues 23 to 43, forms a transmembrane domain and that residues 1 to 22 are located in the cytoplasm and residues 44 to 141 are located in the periplasm. ..
  2. Platzer J, Sterr W, Hausmann M, Schmitt R. Three genes of a motility operon and their role in flagellar rotary speed variation in Rhizobium meliloti. J Bacteriol. 1997;179:6391-9 pubmed
    ..meliloti cell. A working model suggests that interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation...
  3. Peters K, Hinz H, Cesareni G. Introduction of a proline residue into position 31 of the loop of the dimeric 4-alpha-helical protein ROP causes a drastic destabilization. Biol Chem. 1997;378:1141-52 pubmed
    ..All results support the view that in the case of ROP protein the loop region plays a significant role in the maintenance of native structure and conformational stability. ..
  4. Drapal N, Bock A. Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation. Biochemistry. 1998;37:2941-8 pubmed
    ..These results and also the finding that the processed form of HycE is not associated with HypC suggest that HypC binds to pre-HycE to keep it in a conformation accessible for metal incorporation. ..
  5. Bauernfeind A, Chong Y, Lee K. Plasmid-encoded AmpC beta-lactamases: how far have we gone 10 years after the discovery?. Yonsei Med J. 1998;39:520-5 pubmed
    ..At this time, CMY-2 appears to be the most prevalent and widely distributed. Further global increase of prevalence and diversity of plasmidic AmpC beta-lactamases have to be anticipated in the next millenium. ..
  6. Kappes R, Kempf B, Kneip S, Boch J, Gade J, Meier Wagner J, et al. Two evolutionarily closely related ABC transporters mediate the uptake of choline for synthesis of the osmoprotectant glycine betaine in Bacillus subtilis. Mol Microbiol. 1999;32:203-16 pubmed
    ..Despite the close relatedness of OpuB and OpuC, these systems exhibit a striking difference in substrate specificity for osmoprotectants that would not have been predicted readily for such closely related ABC transporters...
  7. Braun M, Killmann H, Braun V. The beta-barrel domain of FhuADelta5-160 is sufficient for TonB-dependent FhuA activities of Escherichia coli. Mol Microbiol. 1999;33:1037-49 pubmed
  8. Weber M, Beckering C, Marahiel M. Complementation of cold shock proteins by translation initiation factor IF1 in vivo. J Bacteriol. 2001;183:7381-6 pubmed
    ..Two of the possible explanation models are discussed. ..
  9. Dürre P, Böhringer M, Nakotte S, Schaffer S, Thormann K, Zickner B. Transcriptional regulation of solventogenesis in Clostridium acetobutylicum. J Mol Microbiol Biotechnol. 2002;4:295-300 pubmed
    ..The recent completion of C. acetobutylicum genome sequencing will pave the way for transcriptional profiling and thus allow comprehension of the coherent regulatory networks of solventogenesis and sporulation...

More Information

Publications707 found, 100 shown here

  1. Eisner G, Koch H, Beck K, Brunner J, Muller M. Ligand crowding at a nascent signal sequence. J Cell Biol. 2003;163:35-44 pubmed
    ..coli secretory protein gradually becomes sequestered by TF. Although TF thereby might control the accessibility of pOmpA's signal sequence to Ffh and SecA, it does not influence interaction of pOmpA with SecB. ..
  2. Mika F, Hengge R. A two-component phosphotransfer network involving ArcB, ArcA, and RssB coordinates synthesis and proteolysis of sigmaS (RpoS) in E. coli. Genes Dev. 2005;19:2770-81 pubmed
    ..Moreover, this induction is enhanced by a positive feedback that involves sigma(S)-dependent induction of ArcA, which further reduces sigma(S) proteolysis, probably by competing with RssB for residual phosphorylation by ArcB. ..
  3. Kruse K, Howard M, Margolin W. An experimentalist's guide to computational modelling of the Min system. Mol Microbiol. 2007;63:1279-84 pubmed
    ..We also review the effects of fluctuations caused by low cellular concentration of Min proteins, and describe how stochastic effects may potentially influence Min protein dynamics. ..
  4. Linne U, Schafer A, Stubbs M, Marahiel M. Aminoacyl-coenzyme A synthesis catalyzed by adenylation domains. FEBS Lett. 2007;581:905-10 pubmed
    ..Product quantification for kinetic determination was carried out by ESI-SIM-MS. Our results allow speculation as to evolutionary relationships within the large class of adenylate forming enzymes. ..
  5. G sringer M, Hartmann R. Function of heterologous and truncated RNase P proteins in Bacillus subtilis. Mol Microbiol. 2007;66:801-13 pubmed publisher
    ..subtilis RNase P protein in vivo, supporting the notion that archaeal/eukaryal RNase P proteins are evolutionary unrelated to the bacterial RnpA protein...
  6. Schmidt S, Adolf F, Fuchsbauer H. The transglutaminase activating metalloprotease inhibitor from Streptomyces mobaraensis is a glutamine and lysine donor substrate of the intrinsic transglutaminase. FEBS Lett. 2008;582:3132-8 pubmed publisher
    ..Formation of lipoamino acids by Streptomycetes suggests such compounds could also modulate in vivo TGase mediated SSTI cross-linking. ..
  7. Benkert B, Qu ck N, Schreiber K, Jaensch L, Jahn D, Schobert M. Nitrate-responsive NarX-NarL represses arginine-mediated induction of the Pseudomonas aeruginosa arginine fermentation arcDABC operon. Microbiology. 2008;154:3053-60 pubmed publisher
    ..Thus, the anaerobic energy metabolism of P. aeruginosa is coordinated via NarX-NarL activity. In the presence of nitrate the highly efficient denitrification is preferred over the less attractive arginine fermentation...
  8. Reith J, Mayer C. Characterization of a glucosamine/glucosaminide N-acetyltransferase of Clostridium acetobutylicum. J Bacteriol. 2011;193:5393-9 pubmed publisher
    ..We suggest that GlmA is required for the recovery of non-N-acetylated muropeptides during cell wall rescue in C. acetobutylicum. ..
  9. Rieff B, Bauer S, Mathias G, Tavan P. DFT/MM description of flavin IR spectra in BLUF domains. J Phys Chem B. 2011;115:11239-53 pubmed publisher
    ..In this connection, a number of methodological issues relevant for such complex computations are thoroughly discussed showing, in particular, why our current descriptions could not decide the light vs dark question for Met(in). ..
  10. Hönicke D, Janssen H, Grimmler C, Ehrenreich A, Lütke Eversloh T. Global transcriptional changes of Clostridium acetobutylicum cultures with increased butanol:acetone ratios. N Biotechnol. 2012;29:485-93 pubmed publisher
    ..The data presented here indicate a transcriptional regulation for decreased acetone biosynthesis and the redox-dependent substitution of adhE1 (CAP0162) by adhE2...
  11. Kowalewski B, Poppe J, Demmer U, Warkentin E, Dierks T, Ermler U, et al. Nature's polyoxometalate chemistry: X-ray structure of the Mo storage protein loaded with discrete polynuclear Mo-O clusters. J Am Chem Soc. 2012;134:9768-74 pubmed publisher
    ..Template, nucleation/protection, and catalyst functions of the polypeptide as well as perspectives for designing new clusters are discussed. ..
  12. Garrido Franco M, Laber B, Huber R, Clausen T. Enzyme-ligand complexes of pyridoxine 5'-phosphate synthase: implications for substrate binding and catalysis. J Mol Biol. 2002;321:601-12 pubmed
  13. Gross R, Guzman C, Sebaihia M, dos Santos V, Pieper D, Koebnik R, et al. The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae. BMC Genomics. 2008;9:449 pubmed publisher
    ..Recently, clinical isolates associated with bone degenerative disease or cystic fibrosis have also been described...
  14. Rupprecht E, Düppre E, Schneider D. Similarities and singularities of three DnaK proteins from the cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol. 2010;51:1210-8 pubmed publisher
    ..Finally, we show that a small amino acid motif, which is typically conserved at the very C-terminus of cyanobacterial DnaK3 proteins, is essential for the DnaK3 in vivo function. ..
  15. Nies D, Herzberg M. A fresh view of the cell biology of copper in enterobacteria. Mol Microbiol. 2013;87:447-54 pubmed publisher
    ..The data presented in the publication by Osman et?al. (2013) change our view of the cell biology of copper in enterobacteria...
  16. Forchhammer K, Tandeau de Marsac N. Phosphorylation of the PII protein (glnB gene product) in the cyanobacterium Synechococcus sp. strain PCC 7942: analysis of in vitro kinase activity. J Bacteriol. 1995;177:5812-7 pubmed
    ..Unlike the PII-modifying uridylyltransferase- and uridylyl-removing enzyme characterized in proteobacteria, the activity of the PII kinase from the cyanobacterium did not respond to glutamine. ..
  17. Kresse A, Schulze K, Deibel C, Ebel F, Rohde M, Chakraborty T, et al. Pas, a novel protein required for protein secretion and attaching and effacing activities of enterohemorrhagic Escherichia coli. J Bacteriol. 1998;180:4370-9 pubmed
    ..These results demonstrate that Pas is a virulence-associated factor that plays an essential role in EHEC pathogenesis. ..
  18. Weigel C, Schmidt A, Seitz H, Tüngler D, Welzeck M, Messer W. The N-terminus promotes oligomerization of the Escherichia coli initiator protein DnaA. Mol Microbiol. 1999;34:53-66 pubmed
    ..We propose that E. coli DnaA is composed of largely independent domains - or modules - each contributing a partial, though essential, function to the proper functioning of the 'holoprotein'. ..
  19. Winterhoff N, Goethe R, Gruening P, Rohde M, Kalisz H, Smith H, et al. Identification and characterization of two temperature-induced surface-associated proteins of Streptococcus suis with high homologies to members of the Arginine Deiminase system of Streptococcus pyogenes. J Bacteriol. 2002;184:6768-76 pubmed
    ..pyogenes SAGP antiserum we were able to demonstrate that the AdiS protein is expressed on the streptococcal surface in association with the capsular polysaccharides but is not coexpressed with them. ..
  20. Sharma S, Szele Z, Schilling R, Munch J, Schloter M. Influence of freeze-thaw stress on the structure and function of microbial communities and denitrifying populations in soil. Appl Environ Microbiol. 2006;72:2148-54 pubmed
    ..Also, the results presented here support the belief that the gas fluxes observed during thawing is a result of freezing initiated high microbial activity. ..
  21. Zellmeier S, Schumann W, Wiegert T. Involvement of Clp protease activity in modulating the Bacillus subtilissigmaw stress response. Mol Microbiol. 2006;61:1569-82 pubmed publisher
  22. Sallam A, Steinbüchel A. Anaerobic and aerobic degradation of cyanophycin by the denitrifying bacterium Pseudomonas alcaligenes strain DIP1 and role of three other coisolates in a mixed bacterial consortium. Appl Environ Microbiol. 2008;74:3434-43 pubmed publisher
    ..This study demonstrates the first investigation of CGP degradation under both anaerobic and aerobic conditions by one bacterial strain, with regard to the physiological role of other bacteria in a mixed consortium...
  23. Gleich Theurer U, Aymanns S, Haas G, Mauerer S, Vogt J, Spellerberg B. Human serum induces streptococcal c5a peptidase expression. Infect Immun. 2009;77:3817-25 pubmed publisher
    ..The specific induction of the streptococcal C5a peptidase by human serum corresponds to the absence of scpB in many bovine S. agalactiae isolates and underlines the importance of this virulence factor for human infections. ..
  24. Petersen J, Brinkmann H, Pradella S. Diversity and evolution of repABC type plasmids in Rhodobacterales. Environ Microbiol. 2009;11:2627-38 pubmed publisher
    ..This prediction is supported by RepA and RepB phylogenies, moreover independent evidence is delivered by the group specificity of highly conserved palindromes (inc beta). ..
  25. Kremer W, Arnold M, Munte C, Hartl R, Erlach M, Koehler J, et al. Pulsed pressure perturbations, an extra dimension in NMR spectroscopy of proteins. J Am Chem Soc. 2011;133:13646-51 pubmed publisher
    ..Selected examples for PPTSS and PPSCS spectroscopy are presented in this Article. ..
  26. Syberg F, Suveyzdis Y, Kötting C, Gerwert K, Hofmann E. Time-resolved Fourier transform infrared spectroscopy of the nucleotide-binding domain from the ATP-binding Cassette transporter MsbA: ATP hydrolysis is the rate-limiting step in the catalytic cycle. J Biol Chem. 2012;287:23923-31 pubmed publisher
    ..Cleavage of the ?-phosphate-?-phosphate bond was found to be the rate-limiting step; no protein-bound phosphate intermediate was resolved...
  27. Brandt K, Müller D, Hoffmann J, Hubert C, Brutschy B, Deckers Hebestreit G, et al. Functional production of the Na+ F1F(O) ATP synthase from Acetobacterium woodii in Escherichia coli requires the native AtpI. J Bioenerg Biomembr. 2013;45:15-23 pubmed publisher
    ..coli could not substitute AtpI from A. woodii. These data demonstrate for the first time a functional production of a F(O)V(O) hybrid rotor in E. coli and revealed that the native AtpI is required for assembly of the hybrid rotor...
  28. Voss S, Hallström T, Saleh M, Burchhardt G, Pribyl T, Singh B, et al. The choline-binding protein PspC of Streptococcus pneumoniae interacts with the C-terminal heparin-binding domain of vitronectin. J Biol Chem. 2013;288:15614-27 pubmed publisher
    ..In conclusion, this study identifies and characterizes (on the molecular level) the interaction between the pneumococcal adhesin PspC and the human glycoprotein vitronectin. ..
  29. Herbst F, Bahr A, Duarte M, Pieper D, Richnow H, von Bergen M, et al. Elucidation of in situ polycyclic aromatic hydrocarbon degradation by functional metaproteomics (protein-SIP). Proteomics. 2013;13:2910-20 pubmed publisher
    ..In situ microcosms in combination with protein-stable isotope probing may be a significant tool for in situ identification of metabolic key players as well as degradation pathways. ..
  30. Jaremko M, Jaremko Å, Jaipuria G, Becker S, Zweckstetter M. Structure of the mammalian TSPO/PBR protein. Biochem Soc Trans. 2015;43:566-71 pubmed publisher
  31. Lehmann A, D Errico A, Vogel M, Spors H. Spatio-Temporal Characteristics of Inhibition Mapped by Optical Stimulation in Mouse Olfactory Bulb. Front Neural Circuits. 2016;10:15 pubmed publisher
    ..MTC response maps showed hyperpolarizing effects radially extending over more than five glomerular diameters. The inhibitory maps exhibited non-symmetrical yet distance-dependent characteristics. ..
  32. Küberl A, Polen T, Bott M. The pupylation machinery is involved in iron homeostasis by targeting the iron storage protein ferritin. Proc Natl Acad Sci U S A. 2016;113:4806-11 pubmed publisher
    ..Genetic and biochemical data support a model in which the pupylation machinery is responsible for iron release from ferritin independent of degradation. ..
  33. Ehrmann F, Stojko J, Metz A, Debaene F, Barandun L, Heine A, et al. Soaking suggests "alternative facts": Only co-crystallization discloses major ligand-induced interface rearrangements of a homodimeric tRNA-binding protein indicating a novel mode-of-inhibition. PLoS ONE. 2017;12:e0175723 pubmed publisher
    ..Likely, this novel twisted dimer is catalytically inactive and, therefore, suggests that stabilizing this non-productive subunit arrangement may be used as a further strategy for TGT inhibition. ..
  34. Klein C, Kaletta C, Entian K. Biosynthesis of the lantibiotic subtilin is regulated by a histidine kinase/response regulator system. Appl Environ Microbiol. 1993;59:296-303 pubmed
    ..Gene deletions within spaR and spaK yielded subtilin-negative mutants, which confirms that subtilin biosynthesis is under the control of a two-component regulatory system.(ABSTRACT TRUNCATED AT 250 WORDS) ..
  35. Lüneberg E, Muller D, Steinmetz I, Frosch M. Monoclonal antibody against species-specific epitope of Pseudomonas aeruginosa Hsp60 protein cross-reacts with Pseudomonas stutzeri and other Pseudomonas species. FEMS Microbiol Lett. 1997;154:131-7 pubmed
    ..aeruginosa and all four cross-reacting species constitute a DNA homology group within the rRNA group I of the family Pseudomonadaceae, which belong to the gamma-subclass of the Proteobacteria. ..
  36. Mahr K, Hillen W, Titgemeyer F. Carbon catabolite repression in Lactobacillus pentosus: analysis of the ccpA region. Appl Environ Microbiol. 2000;66:277-83 pubmed
    ..A comparison of the genetic structures of ccpA regions revealed that lactic acid bacteria possess the gene order pepQ-ccpA-variable while the genetic structure in bacilli and Staphylococcus xylosus is aroA-ccpA-variable-acuC...
  37. Clausen T, Southan C, Ehrmann M. The HtrA family of proteases: implications for protein composition and cell fate. Mol Cell. 2002;10:443-55 pubmed
    ..Here, we discuss the properties and roles of this ATP-independent protease chaperone system in protein metabolism and cell fate. ..
  38. Sinnecker S, Flores M, Lubitz W. Protein-cofactor interactions in bacterial reaction centers from Rhodobacter sphaeroides R-26: effect of hydrogen bonding on the electronic and geometric structure of the primary quinone. A density functional theory study. Phys Chem Chem Phys. 2006;8:5659-70 pubmed
    ..The significance of hydrogen bonding to the quinone cofactors in biological systems is discussed. ..
  39. Mern D, Ha S, Khodaverdi V, Gliese N, Görisch H. A complex regulatory network controls aerobic ethanol oxidation in Pseudomonas aeruginosa: indication of four levels of sensor kinases and response regulators. Microbiology. 2010;156:1505-16 pubmed publisher
    ..Probably, two additional sensor kinases and two additional response regulators, which are hidden among the numerous regulatory genes annotated in the genome of P. aeruginosa, remain to be identified. ..
  40. Hartmann E, Messner P, Allmeier G, Konig H. Proposed pathway for biosynthesis of the S-layer glycoprotein of Bacillus alvei. J Bacteriol. 1993;175:4515-9 pubmed
    ..Furthermore, GDP- and dolichyl-activated oligosaccharides were obtained. On the basis of the isolated putative glycoprotein precursors, a pathway for the biosynthesis of the oligosaccharide chain is proposed. ..
  41. Kurz M, Guba W, Vertesy L. Three-dimensional structure of moenomycin A--a potent inhibitor of penicillin-binding protein 1b. Eur J Biochem. 1998;252:500-7 pubmed
    ..1993) Transglycosylase inhibition, in Antibiotics and antiviral compounds--Chemical synthesis and modifications (Krohn, K., Kirst, H. A. & Maag, H., eds) pp. 373-378, VCH Weinheim]. ..
  42. Mayans O, Ivens A, Nissen L, Kirschner K, Wilmanns M. Structural analysis of two enzymes catalysing reverse metabolic reactions implies common ancestry. EMBO J. 2002;21:3245-54 pubmed
    ..These relationships establish new links for enzymes involved in nucleotide and amino acid metabolism. ..
  43. Stein T, Heinzmann S, Solovieva I, Entian K. Function of Lactococcus lactis nisin immunity genes nisI and nisFEG after coordinated expression in the surrogate host Bacillus subtilis. J Biol Chem. 2003;278:89-94 pubmed
    ..subtilis membrane vesicles and recombinant hexahistidine-tagged NisI from Escherichia coli interacted specifically with nisin and not with subtilin. This suggests a function of NisI as a nisin-intercepting protein. ..
  44. Higgins P, Wisplinghoff H, Stefanik D, Seifert H. Selection of topoisomerase mutations and overexpression of adeB mRNA transcripts during an outbreak of Acinetobacter baumannii. J Antimicrob Chemother. 2004;54:821-3 pubmed
    ..These data illustrate the propensity for A. baumannii to develop multi-drug resistance rapidly. ..
  45. Banh Q, Arenskötter M, Steinbüchel A. Establishment of Tn5096-based transposon mutagenesis in Gordonia polyisoprenivorans. Appl Environ Microbiol. 2005;71:5077-84 pubmed
    ..One rubber-negative mutant was disrupted in mcr, encoding an alpha-methylacyl-coenzyme A racemase. This mutant was defective in degradation of poly(cis-1,4-isoprene) and also of highly branched isoprenoid hydrocarbons...
  46. Zocher G, Winkler R, Hertweck C, Schulz G. Structure and action of the N-oxygenase AurF from Streptomyces thioluteus. J Mol Biol. 2007;373:65-74 pubmed
    ..There is no oxo-bridge. The substrate p-amino-benzoate was modeled into the active center. The model is supported by mutant activity measurements. It shows the geometry of the reaction and explains the established substrate spectrum. ..
  47. Lorenz C, Kirchner O, Egler M, Stuttmann J, Bonas U, Büttner D. HpaA from Xanthomonas is a regulator of type III secretion. Mol Microbiol. 2008;69:344-60 pubmed publisher
    ..Secretion of HpaA presumably liberates HpaB and thus promotes effector protein secretion after assembly of the T3S apparatus...
  48. Ruehland C, Blazejak A, Lott C, Loy A, Erséus C, Dubilier N. Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments. Environ Microbiol. 2008;10:3404-16 pubmed publisher
  49. Bramkamp M, Emmins R, Weston L, Donovan C, Daniel R, Errington J. A novel component of the division-site selection system of Bacillus subtilis and a new mode of action for the division inhibitor MinCD. Mol Microbiol. 2008;70:1556-69 pubmed publisher
    ..The results support a model in which the main function of the Min system lies in allowing only a single round of division per cell cycle, and that MinCD acts at multiple levels to prevent inappropriate division. ..
  50. Keilberg D, Wuichet K, Drescher F, Søgaard Andersen L. A response regulator interfaces between the Frz chemosensory system and the MglA/MglB GTPase/GAP module to regulate polarity in Myxococcus xanthus. PLoS Genet. 2012;8:e1002951 pubmed publisher
  51. Hilmi D, Parcina M, Bode K, Ostrop J, Schuett S, Heeg K, et al. Functional variation reflects intra-strain diversity of Staphylococcus aureus small colony variants in the host-pathogen interaction. Int J Med Microbiol. 2013;303:61-9 pubmed publisher
    ..Taken together, our study provides in vivo evidence for the functional consequences of intra-strain variation in S. aureus. ..
  52. Horne M, Englert C, Wimmer C, Pfeifer F. A DNA region of 9 kbp contains all genes necessary for gas vesicle synthesis in halophilic archaebacteria. Mol Microbiol. 1991;5:1159-74 pubmed
    ..However, gas vesicle synthesis could be restored in each Vac mutant containing an ISH element when the entire transcription unit encompassing the mutated gene on pHH1 was present in the wild-type form on the vector construct. ..
  53. Siebert M, Severin K, Heide L. Formation of 4-hydroxybenzoate in Escherichia coli: characterization of the ubiC gene and its encoded enzyme chorismate pyruvate-lyase. Microbiology. 1994;140 ( Pt 4):897-904 pubmed
    ..A feeding experiment with [1,7-13C2]shikimate confirmed the chorismate pyruvate-lyase as the sole enzymic source of 4-hydroxybenzoate in vivo. ..
  54. Carrano C, Bohnke R, Matzanke B. Fungal ferritins: the ferritin from mycelia of Absidia spinosa is a bacterioferritin. FEBS Lett. 1996;390:261-4 pubmed
    ..This is the first example demonstrating the presence of a bacterioferritin in a eukaryotic organism. ..
  55. Haardt M, Bremer E. Use of phoA and lacZ fusions to study the membrane topology of ProW, a component of the osmoregulated ProU transport system of Escherichia coli. J Bacteriol. 1996;178:5370-81 pubmed
  56. Müller Hill B. The function of auxiliary operators. Mol Microbiol. 1998;29:13-8 pubmed
    ..For this purpose, a strategy is used over and over again. It is called increase in local concentration. How Escherichia coli uses this strategy efficiently is discussed. ..
  57. Wiedemann B, Dietz H, Pfeifle D. Induction of beta-lactamase in Enterobacter cloacae. Clin Infect Dis. 1998;27 Suppl 1:S42-7 pubmed
    ..These findings indicate that besides M-tripeptide and D-tripeptide, probably M-tetrapeptide, D-tetrapeptide, M-pentapeptide, and D-pentapeptide are also signal muropeptides for beta-lactamase induction. ..
  58. Tobisch S, Stülke J, Hecker M. Regulation of the lic operon of Bacillus subtilis and characterization of potential phosphorylation sites of the LicR regulator protein by site-directed mutagenesis. J Bacteriol. 1999;181:4995-5003 pubmed
    ..Moreover, the lic operon is subject to carbon catabolite repression (CCR). CCR takes place via a CcpA-dependent mechanism and a CcpA-independent mechanism in which the general PTS enzyme HPr is involved. ..
  59. Rother M, Resch A, Gardner W, Whitman W, B ck A. Heterologous expression of archaeal selenoprotein genes directed by the SECIS element located in the 3' non-translated region. Mol Microbiol. 2001;40:900-8 pubmed
    ..maripaludis genome contains an open reading frame with two in frame TGA codons, followed by a stem-loop structure in the 3' UTR of the mRNA that corresponds to the archaeal SECIS element...
  60. Teeling H, Lombardot T, Bauer M, Ludwig W, Glöckner F. Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. Int J Syst Evol Microbiol. 2004;54:791-801 pubmed
    ..Therefore, these analyses rather contradict a deep branching position of the Planctomycetes within the bacterial domain and reaffirm their earlier proposed relatedness to the Chlamydiae...
  61. Steller S, Sokoll A, Wilde C, Bernhard F, Franke P, Vater J. Initiation of surfactin biosynthesis and the role of the SrfD-thioesterase protein. Biochemistry. 2004;43:11331-43 pubmed
    ..Menkhaus et al. (1993) J. Biol. Chem. 268, 7678-7684], thus enhancing surfactin formation. ..
  62. Seidel G, Diel M, Fuchsbauer N, Hillen W. Quantitative interdependence of coeffectors, CcpA and cre in carbon catabolite regulation of Bacillus subtilis. FEBS J. 2005;272:2566-77 pubmed
    ..Maximal HPrSerP-CcpA-cre complex formation in the presence of 10 mm FBP requires about 10-fold less HPrSerP. These data suggest a specific role for FBP and Glc6-P in enhancing only HPrSerP-mediated CCR. ..
  63. Schl nzen F, Wilson D, Tian P, Harms J, McInnes S, Hansen H, et al. The binding mode of the trigger factor on the ribosome: implications for protein folding and SRP interaction. Structure. 2005;13:1685-94 pubmed publisher
  64. Nowak E, Panjikar S, Konarev P, Svergun D, Tucker P. The structural basis of signal transduction for the response regulator PrrA from Mycobacterium tuberculosis. J Biol Chem. 2006;281:9659-66 pubmed
  65. Horn C, Sohn Bösser L, Breed J, Welte W, Schmitt L, Bremer E. Molecular determinants for substrate specificity of the ligand-binding protein OpuAC from Bacillus subtilis for the compatible solutes glycine betaine and proline betaine. J Mol Biol. 2006;357:592-606 pubmed
  66. Licht A, Brantl S. Transcriptional repressor CcpN from Bacillus subtilis compensates asymmetric contact distribution by cooperative binding. J Mol Biol. 2006;364:434-48 pubmed
    ..Based on these data, possible consequences for the repression mechanism of CcpN are discussed. ..
  67. Drepper T, Eggert T, Circolone F, Heck A, Krauss U, Guterl J, et al. Reporter proteins for in vivo fluorescence without oxygen. Nat Biotechnol. 2007;25:443-5 pubmed
  68. Michalik S, Liebeke M, Zühlke D, Lalk M, Bernhardt J, Gerth U, et al. Proteolysis during long-term glucose starvation in Staphylococcus aureus COL. Proteomics. 2009;9:4468-77 pubmed publisher
    ..Proteolysis of putative non-substrate-bound or "unemployed" proteins appears to be a characteristic feature of S. aureus in order to access nutrients as an important survival strategy under starvation conditions. ..
  69. Hendrischk A, Frühwirth S, Moldt J, Pokorny R, Metz S, Kaiser G, et al. A cryptochrome-like protein is involved in the regulation of photosynthesis genes in Rhodobacter sphaeroides. Mol Microbiol. 2009;74:990-1003 pubmed publisher
    ..sphaeroides. Thus, for the first time a role of a bacterial cryptochrome in gene regulation together with a biological function is demonstrated...
  70. Börngen K, Battle A, Möker N, Morbach S, Marin K, Martinac B, et al. The properties and contribution of the Corynebacterium glutamicum MscS variant to fine-tuning of osmotic adaptation. Biochim Biophys Acta. 2010;1798:2141-9 pubmed publisher
    ..glutamicum by fine-tuning the steady state concentration of compatible solutes in the cytoplasm which are accumulated in response to hyperosmotic stress...
  71. Methner U, Barrow P, Berndt A, Rychlik I. Salmonella Enteritidis with double deletion in phoPfliC--a potential live Salmonella vaccine candidate with novel characteristics for use in chickens. Vaccine. 2011;29:3248-53 pubmed publisher
    ..The double phoPfliC deletion mutant of Salmonella Enteritidis might be a potential and promising live Salmonella vaccine candidate with novel characteristics for use in poultry...
  72. Barthel S, Rupprecht E, Schneider D. Thermostability of two cyanobacterial GrpE thermosensors. Plant Cell Physiol. 2011;52:1776-85 pubmed publisher
    ..Thus, in two related cyanobacteria the GrpE thermosensing function might be mediated by different protein domains...
  73. Potzkei J, Kunze M, Drepper T, Gensch T, Jaeger K, Buchs J. Real-time determination of intracellular oxygen in bacteria using a genetically encoded FRET-based biosensor. BMC Biol. 2012;10:28 pubmed publisher
    ..Thus, FluBO can serve as a novel and powerful probe for investigating the occurrence of hypoxia and its effects on a variety of (patho)physiological processes in living cells. ..
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