Experts and Doctors on arabidopsis in Japan

Summary

Locale: Japan
Topic: arabidopsis

Top Publications

  1. Urao T, Yamaguchi Shinozaki K, Mitsukawa N, Shibata D, Shinozaki K. Molecular cloning and characterization of a gene that encodes a MYC-related protein in Arabidopsis. Plant Mol Biol. 1996;32:571-6 pubmed
  2. Adachi S, Uchimiya H, Umeda M. Expression of B2-type cyclin-dependent kinase is controlled by protein degradation in Arabidopsis thaliana. Plant Cell Physiol. 2006;47:1683-6 pubmed
    ..We propose that the abundance of CDKB2 protein is regulated not only at the transcriptional level, but also through proteasome-mediated protein degradation. ..
  3. Ito T, Nakata M, Fukazawa J, Ishida S, Takahashi Y. Alteration of substrate specificity: the variable N-terminal domain of tobacco Ca(2+)-dependent protein kinase is important for substrate recognition. Plant Cell. 2010;22:1592-604 pubmed publisher
    ..Our results open the possibility of engineering the substrate specificity of CDPK by manipulation of the variable N-terminal domain, enabling a rational rewiring of cellular signaling pathways. ..
  4. Okajima K, Kashojiya S, Tokutomi S. Photosensitivity of kinase activation by blue light involves the lifetime of a cysteinyl-flavin adduct intermediate, S390, in the photoreaction cycle of the LOV2 domain in phototropin, a plant blue light receptor. J Biol Chem. 2012;287:40972-81 pubmed publisher
  5. Kiyosue T, Yamaguchi Shinozaki K, Shinozaki K. ERD15, a cDNA for a dehydration-induced gene from Arabidopsis thaliana. Plant Physiol. 1994;106:1707 pubmed
  6. Tsuge T, Tsukaya H, Uchimiya H. Two independent and polarized processes of cell elongation regulate leaf blade expansion in Arabidopsis thaliana (L.) Heynh. Development. 1996;122:1589-600 pubmed
  7. Sugimoto M, Sakamoto W. Putative phospholipid hydroperoxide glutathione peroxidase gene from Arabidopsis thaliana induced by oxidative stress. Genes Genet Syst. 1997;72:311-6 pubmed
    ..5 times after exposure to NaCl and Al/Fe, respectively. These results suggest that the putative PHGPX gene is induced by oxidative stress in Arabidopsis. ..
  8. Matsushika A, Makino S, Kojima M, Mizuno T. Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators in Arabidopsis thaliana: insight into the plant circadian clock. Plant Cell Physiol. 2000;41:1002-12 pubmed
    ..Here we propose that the circadian waves of the APRR1/TOC1 family members are most likely a molecular basis of such a biological clock in higher plants. ..
  9. Takahashi M, Sasaki Y, Ida S, Morikawa H. Nitrite reductase gene enrichment improves assimilation of NO(2) in Arabidopsis. Plant Physiol. 2001;126:731-41 pubmed
    ..The flux control coefficients of nitrate reductase and glutamine synthetase were much smaller than this value. Together, these findings indicate that NiR is a controlling enzyme in NO(2) assimilation by plants. ..

More Information

Publications156 found, 100 shown here

  1. Nagata N, Tanaka R, Satoh S, Tanaka A. Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of Prochlorococcus species. Plant Cell. 2005;17:233-40 pubmed
    ..marinus but found in the Synechococcus sp WH8102 genome, which is consistent with the distribution of divinyl chlorophyll in marine cyanobacteria of the genera Prochlorococcus and Synechococcus...
  2. Ogawa D, Nakajima N, Sano T, Tamaoki M, Aono M, Kubo A, et al. Salicylic acid accumulation under O3 exposure is regulated by ethylene in tobacco plants. Plant Cell Physiol. 2005;46:1062-72 pubmed publisher
    ..These results indicate that ethylene promotes SA accumulation by regulating the expression of the CM and PAL genes in O3-exposed tobacco...
  3. Uemura T, Sato M, Takeyasu K. The longin domain regulates subcellular targeting of VAMP7 in Arabidopsis thaliana. FEBS Lett. 2005;579:2842-6 pubmed
    ..The results showed that, whereas the TMD is not relevant for the vacuolar targeting, a complete LD is essential for the vacuolar and subcellular targeting. ..
  4. Ito S, Suzuki Y, Miyamoto K, Ueda J, Yamaguchi I. AtFLA11, a fasciclin-like arabinogalactan-protein, specifically localized in sclerenchyma cells. Biosci Biotechnol Biochem. 2005;69:1963-9 pubmed
    ..The fluctuation of AtFLA11 transcripts during the maturation process of sclerenchyma cells suggests its role in the formation of the secondary cell wall. ..
  5. Iida K, Go M. Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants. Mol Biol Evol. 2006;23:1085-94 pubmed
    ..The complicated transcriptome created by regulated AS events might have provided plants tolerance against droughts or temperature shifts and given them the ability to live on land. ..
  6. Desaki Y, Miya A, Venkatesh B, Tsuyumu S, Yamane H, Kaku H, et al. Bacterial lipopolysaccharides induce defense responses associated with programmed cell death in rice cells. Plant Cell Physiol. 2006;47:1530-40 pubmed
    ..Interestingly, PCD induction by the LPS was not detected in cultured Arabidopsis thaliana cells. ..
  7. Umezawa T, Sugiyama N, Mizoguchi M, Hayashi S, Myouga F, Yamaguchi Shinozaki K, et al. Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc Natl Acad Sci U S A. 2009;106:17588-93 pubmed publisher
    ..Our results demonstrate that group A PP2Cs act as 'gatekeepers' of subclass III SnRK2s, unraveling an important regulatory mechanism of ABA signaling. ..
  8. Ariizumi T, Toriyama K. Genetic regulation of sporopollenin synthesis and pollen exine development. Annu Rev Plant Biol. 2011;62:437-60 pubmed publisher
  9. Yamashino T, Nomoto Y, Lorrain S, Miyachi M, Ito S, Nakamichi N, et al. Verification at the protein level of the PIF4-mediated external coincidence model for the temperature-adaptive photoperiodic control of plant growth in Arabidopsis thaliana. Plant Signal Behav. 2013;8:e23390 pubmed publisher
    ..Here we present such crucial evidence on PIF4 protein level to further support the external coincidence model underlying the temperature-adaptive photoperiodic control of plant growth in A. thaliana. ..
  10. Mitsui H, Yamaguchi Shinozaki K, Shinozaki K, Nishikawa K, Takahashi H. Identification of a gene family (kat) encoding kinesin-like proteins in Arabidopsis thaliana and the characterization of secondary structure of KatA. Mol Gen Genet. 1993;238:362-8 pubmed
    ..The predicted secondary structure of the KatA protein indicates two globular domains separated by a long alpha helical coiled coil with heptad repeat structures, such as are commonly found in kinesin-like proteins. ..
  11. Mino K, Hiraoka K, Imamura K, Sakiyama T, Eisaki N, Matsuyama A, et al. Characteristics of serine acetyltransferase from Escherichia coli deleting different lengths of amino acid residues from the C-terminus. Biosci Biotechnol Biochem. 2000;64:1874-80 pubmed
    ..The C-terminal peptide of the 10 amino acid residues interacted competitively with OASS-A with respect to OAS although its affinity was much lower than that for the wild-type SAT. ..
  12. Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M. ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell. 2007;19:118-30 pubmed
    ..Our results reveal that ARFs regulate lateral root formation via direct activation of LBD/ASLs in Arabidopsis. ..
  13. Harashima H, Shinmyo A, Sekine M. Phosphorylation of threonine 161 in plant cyclin-dependent kinase A is required for cell division by activation of its associated kinase. Plant J. 2007;52:435-48 pubmed
    ..Thus, phosphorylation of T161 in Arabidopsis CDKA;1 is essential for cell division during male gametogenesis. ..
  14. Miya A, Albert P, Shinya T, Desaki Y, Ichimura K, Shirasu K, et al. CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis. Proc Natl Acad Sci U S A. 2007;104:19613-8 pubmed
  15. Qin F, Sakuma Y, Tran L, Maruyama K, Kidokoro S, Fujita Y, et al. Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression. Plant Cell. 2008;20:1693-707 pubmed publisher
    ..These results suggest that DRIP1 and DRIP2 act as novel negative regulators in drought-responsive gene expression by targeting DREB2A to 26S proteasome proteolysis. ..
  16. Maruyama K, Takeda M, Kidokoro S, Yamada K, Sakuma Y, Urano K, et al. Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A. Plant Physiol. 2009;150:1972-80 pubmed publisher
    ..Strong freezing stress tolerance of the transgenic plants overexpressing DREB1A may depend on accumulation of these metabolites. ..
  17. Tran L, Urao T, Qin F, Maruyama K, Kakimoto T, Shinozaki K, et al. Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis. Proc Natl Acad Sci U S A. 2007;104:20623-8 pubmed
    ..Last, cytokinin clearly mediates stress responses because it was required for CRE1 to function as a negative regulator of osmotic stress. ..
  18. Yamaguchi Shinozaki K, Shinozaki K. A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell. 1994;6:251-64 pubmed
    ..Different cis-acting elements seem to function in the two-step induction of rd29A and in the slow induction of rd29B under conditions of dehydration, high salt, or low temperature. ..
  19. Kubo A, Saji H, Tanaka K, Kondo N. Genomic DNA structure of a gene encoding cytosolic ascorbate peroxidase from Arabidopsis thaliana. FEBS Lett. 1993;315:313-7 pubmed
    ..The exon/intron organization of the APX1 gene differs from that of the guaiacol peroxidase genes. ..
  20. Mita S, Murano N, Akaike M, Nakamura K. Mutants of Arabidopsis thaliana with pleiotropic effects on the expression of the gene for beta-amylase and on the accumulation of anthocyanin that are inducible by sugars. Plant J. 1997;11:841-51 pubmed
    ..These results suggest that the sugar-regulated expression of many genes in plants might be mediated by multiple signal-transduction pathways. ..
  21. Jones P, Manabe T, Awazuhara M, Saito K. A new member of plant CS-lyases. A cystine lyase from Arabidopsis thaliana. J Biol Chem. 2003;278:10291-6 pubmed publisher
    ..thaliana genes annotated as tyrosine aminotransferase-like...
  22. Hirano T, Sato M. Overexpression of FAB1A-GFP recruits SNX2b on the endosome membrane in snx1-1 mutant in Arabidopsis. Plant Signal Behav. 2016;11:e1110663 pubmed publisher
    ..From these results, we proposed that SNX2b homodimer or SNX2a/SNX2b heterodimer might function as functional Sorting Nexin complex instead of SNX1 to attach the endosomal membrane by binding of overproduced PI(3,5)P2 in Arabidopsis. ..
  23. Ikegawa S, Isomura M, Koshizuka Y, Nakamura Y. Cloning and characterization of human and mouse PROSC (proline synthetase co-transcribed) genes. J Hum Genet. 1999;44:337-42 pubmed
    ..The gene product is likely to be a soluble cytoplasmic protein, but its function remains to be determined. ..
  24. Tran L, Nakashima K, Shinozaki K, Yamaguchi Shinozaki K. Plant gene networks in osmotic stress response: from genes to regulatory networks. Methods Enzymol. 2007;428:109-28 pubmed
    ..This chapter summarizes the methodology used to dissect gene regulatory networks involved in the response to osmotic stresses, such as drought and high salinity. ..
  25. Saish D, Nakazono M, Lee K, Tsutsumi N, Akita S, Hirai A. The gene for alternative oxidase-2 (AOX2) from Arabidopsis thaliana consists of five exons unlike other AOX genes and is transcribed at an early stage during germination. Genes Genet Syst. 2001;76:89-97 pubmed
    ..Analysis of subcellular localization of AOX2 using green fluorescent protein indicated that the AOX2 protein is imported into the mitochondria. ..
  26. Hatano Iwasaki A, Ogawa K. Overexpression of GSH1 gene mimics transcriptional response to low temperature during seed vernalization treatment of Arabidopsis. Plant Cell Physiol. 2012;53:1195-203 pubmed publisher
  27. Behnam B, Kikuchi A, Celebi Toprak F, Kasuga M, Yamaguchi Shinozaki K, Watanabe K. Arabidopsis rd29A::DREB1A enhances freezing tolerance in transgenic potato. Plant Cell Rep. 2007;26:1275-82 pubmed
    ..Additional testing will show whether this strategy can be used for tolerance breeding in potato and to increase the freezing tolerance of other agriculturally important crops. ..
  28. Fukaki H, Nakao Y, Okushima Y, Theologis A, Tasaka M. Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis. Plant J. 2005;44:382-95 pubmed
    ..Thus, our data show that tissue-specific expression of a stabilized Aux/IAA protein allows analysis of tissue-specific auxin responses in LR development by inactivating ARF functions. ..
  29. Kapoor S, Takatsuji H. Silencing of an anther-specific zinc-finger gene, MEZ1, causes aberrant meiosis and pollen abortion in petunia. Plant Mol Biol. 2006;61:415-30 pubmed
    ..Resulting T1 plants had increased ploidy levels and exhibited severe anomalies during male meiosis, rendering them completely sterile. We discuss possible role of MEZ1 in the proper progression of plant meiosis. ..
  30. Urano K, Maruyama K, Ogata Y, Morishita Y, Takeda M, Sakurai N, et al. Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J. 2009;57:1065-78 pubmed publisher
    ..This metabolomics analysis revealed new molecular mechanisms of dynamic metabolic networks in response to dehydration stress. ..
  31. Hadiarto T, Nanmori T, Matsuoka D, Iwasaki T, Sato K, Fukami Y, et al. Activation of Arabidopsis MAPK kinase kinase (AtMEKK1) and induction of AtMEKK1-AtMEK1 pathway by wounding. Planta. 2006;223:708-13 pubmed
    ..Furthermore, analysis using anti-AtMEKK1 and anti-AtMEK1 antibodies revealed that the interaction between the two proteins was signal dependent. These results suggest the presence of AtMEKK1-AtMEK1 pathway induced by wounding. ..
  32. Kanaoka M, Urban S, Freeman M, Okada K. An Arabidopsis Rhomboid homolog is an intramembrane protease in plants. FEBS Lett. 2005;579:5723-8 pubmed
    ..These studies provide the first evidence that the determinants of RIP are present in plants. ..
  33. Kawachi M, Kobae Y, Kogawa S, Mimura T, Krämer U, Maeshima M. Amino acid screening based on structural modeling identifies critical residues for the function, ion selectivity and structure of Arabidopsis MTP1. FEBS J. 2012;279:2339-56 pubmed publisher
  34. Takagi H, Ishiga Y, Watanabe S, Konishi T, Egusa M, Akiyoshi N, et al. Allantoin, a stress-related purine metabolite, can activate jasmonate signaling in a MYC2-regulated and abscisic acid-dependent manner. J Exp Bot. 2016;67:2519-2532 pubmed publisher
    ..Overall, this study suggests a possible connection of purine catabolism with stress hormone homeostasis and signaling, and highlights the potential importance of allantoin in these interactions. ..
  35. Ariga H, Katori T, Tsuchimatsu T, Hirase T, Tajima Y, Parker J, et al. NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nat Plants. 2017;3:17072 pubmed publisher
    ..Thus, polymorphism in certain plant NLR genes might be influenced by competing environmental stresses. ..
  36. Matsushima M, Inazawa J, Takahashi E, Suzumori K, Nakamura Y. Molecular cloning and mapping of a human cDNA (SC5DL) encoding a protein homologous to fungal sterol-C5-desaturase. Cytogenet Cell Genet. 1996;74:252-4 pubmed
    ..The gene was expressed in all normal human tissues examined. We determined its location to chromosome 11q23.3 by fluorescence in situ hybridization. ..
  37. Ito T, Kim G, Shinozaki K. Disruption of an Arabidopsis cytoplasmic ribosomal protein S13-homologous gene by transposon-mediated mutagenesis causes aberrant growth and development. Plant J. 2000;22:257-64 pubmed
  38. Sompornpailin K, Makita Y, Yamazaki M, Saito K. A WD-repeat-containing putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol Biol. 2002;50:485-95 pubmed
    ..We propose a model of genetic regulation in which the PFWD protein acts in signal transduction process in a variety of pathways through protein interaction with MYC proteins...
  39. Ito H, Iwabuchi M, Ogawa K. The sugar-metabolic enzymes aldolase and triose-phosphate isomerase are targets of glutathionylation in Arabidopsis thaliana: detection using biotinylated glutathione. Plant Cell Physiol. 2003;44:655-60 pubmed
    ..Recombinant TPI was inactivated by GSSG, and it was reactivated by GSH. The physiological roles of glutathionylation of TPI and aldolase in sugar metabolism are discussed. ..
  40. Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. dwarf and delayed-flowering 1, a novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor. Plant J. 2004;37:720-9 pubmed
    ..These results suggest that DDF1 is involved in the regulation of GA biosynthesis and stress tolerance. The possible relation between the contents of endogenous GAs and acquisition of stress protection is discussed. ..
  41. Tajima H, Iwata Y, Iwano M, Takayama S, Koizumi N. Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response. Biochem Biophys Res Commun. 2008;374:242-7 pubmed publisher
  42. Yoshiba Y, Kiyosue T, Katagiri T, Ueda H, Mizoguchi T, Yamaguchi Shinozaki K, et al. Correlation between the induction of a gene for delta 1-pyrroline-5-carboxylate synthetase and the accumulation of proline in Arabidopsis thaliana under osmotic stress. Plant J. 1995;7:751-60 pubmed
    ..The AtP5CR gene was not induced to a significant extent by dehydration or high-salt stress. These observations suggest that the AtP5CS gene plays a principal role in the biosynthesis of proline in A. thaliana under osmotic stress. ..
  43. Saisho D, Nambara E, Naito S, Tsutsumi N, Hirai A, Nakazono M. Characterization of the gene family for alternative oxidase from Arabidopsis thaliana. Plant Mol Biol. 1997;35:585-96 pubmed
    ..These results suggested that transcriptions of the four genes for alternative oxidase of Arabidopsis are differentially regulated. ..
  44. Nakashima K, Shinwari Z, Sakuma Y, Seki M, Miura S, Shinozaki K, et al. Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression. Plant Mol Biol. 2000;42:657-65 pubmed
    ..Several conserved sequences were found in the promoter regions of both genes. The beta-glucuronidase (GUS) reporter gene driven by the DREB2 promoters was induced by dehydration and high-salt stress in transgenic Arabidopsis plants. ..
  45. Miyashita N, Kawabe A, Innan H, Terauchi R. Intra- and interspecific DNA variation and codon bias of the alcohol dehydrogenase (Adh) locus in Arabis and Arabidopsis species. Mol Biol Evol. 1998;15:1420-9 pubmed
    ..quot;Preferred" codons of A. thaliana were determined. No evidence of natural selection on codon change was detected in the Adh regions of A. thaliana and Arabis gemmifera...
  46. Oshima Y, Kamigaki A, Nakamori C, Mano S, Hayashi M, Nishimura M, et al. Plant catalase is imported into peroxisomes by Pex5p but is distinct from typical PTS1 import. Plant Cell Physiol. 2008;49:671-7 pubmed publisher
    ..Interestingly, however, we found that Cat1 interacts with the N-terminal domain of Pex5p, but not the C-terminal domain for interaction with the typical PTS1, revealing that Pex5p recognizes Cat1 in a manner distinct from typical PTS1. ..
  47. Oka T, Saito F, Shimma Y, Yoko o T, Nomura Y, Matsuoka K, et al. Characterization of endoplasmic reticulum-localized UDP-D-galactose: hydroxyproline O-galactosyltransferase using synthetic peptide substrates in Arabidopsis. Plant Physiol. 2010;152:332-40 pubmed publisher
    ..To our knowledge, this is the first characterization of HGT, and the data provide evidence that arabinogalactan biosynthesis occurs in the protein transport pathway. ..
  48. Kajikawa M, Fujibe T, Uraguchi S, Miwa K, Fujiwara T. Expression of the Arabidopsis borate efflux transporter gene, AtBOR4, in rice affects the xylem loading of boron and tolerance to excess boron. Biosci Biotechnol Biochem. 2011;75:2421-3 pubmed
    ..Those lines with high levels of expression exhibited reduced growth. These findings suggest a potential of the borate transporter BOR4 for the generation of high-boron tolerant rice...
  49. Yamasaki K, Motomura Y, Yagi Y, Nomura H, Kikuchi S, Nakai M, et al. Chloroplast envelope localization of EDS5, an essential factor for salicylic acid biosynthesis in Arabidopsis thaliana. Plant Signal Behav. 2013;8:e23603 pubmed publisher
    ..In addition, we found that EDS5 is preferentially expressed in epidermal cells. These findings suggest that EDS5 is responsible for transport of SA from chloroplasts to the cytoplasm in epidermal cells. ..
  50. Satake A, Seki M, Iima M, Teramoto T, Nishiura Y. Florigen distribution determined by a source-sink balance explains the diversity of inflorescence structures in Arabidopsis. J Theor Biol. 2016;395:227-237 pubmed publisher
    ..This finding highlights the importance of monitoring the spatio-temporal sucrose distribution and floral stimulus to understand inflorescence development mechanism. ..
  51. Sakamoto W, Kondo H, Murata M, Motoyoshi F. Altered mitochondrial gene expression in a maternal distorted leaf mutant of Arabidopsis induced by chloroplast mutator. Plant Cell. 1996;8:1377-90 pubmed
    ..Thus, a mutation at the CHM locus affects mitochondrial gene expression, and impaired mitochondrial function may result in the distorted phenotype. ..
  52. Mitsukawa N, Okumura S, Shirano Y, Sato S, Kato T, Harashima S, et al. Overexpression of an Arabidopsis thaliana high-affinity phosphate transporter gene in tobacco cultured cells enhances cell growth under phosphate-limited conditions. Proc Natl Acad Sci U S A. 1997;94:7098-102 pubmed
    ..The transgenic cells exhibited increased biomass production when the supply of phosphate was limited, establishing gene engineering of phosphate transport as one approach toward enhancing plant cell growth. ..
  53. Suzuki T, Imamura A, Ueguchi C, Mizuno T. Histidine-containing phosphotransfer (HPt) signal transducers implicated in His-to-Asp phosphorelay in Arabidopsis. Plant Cell Physiol. 1998;39:1258-68 pubmed
    ..It was thus suggested that the uncovered sensors-AHPs-ARRs lineups may play important roles in propagating environmental stimuli through the multistep His-Asp phosphorelay in Arabidopsis. ..
  54. Fujimori T, Sato E, Yamashino T, Mizuno T. PRR5 (PSEUDO-RESPONSE REGULATOR 5) plays antagonistic roles to CCA1 (CIRCADIAN CLOCK-ASSOCIATED 1) in Arabidopsis thaliana. Biosci Biotechnol Biochem. 2005;69:426-30 pubmed
    ..Evidence will be provided that PRR5 plays an antagonistic role(s) to the putative CCA1 clock component. ..
  55. Mizoguchi T, Wright L, Fujiwara S, Cremer F, Lee K, Onouchi H, et al. Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. Plant Cell. 2005;17:2255-70 pubmed
    ..We propose that the effect of GI on flowering is not an indirect effect of its role in circadian clock regulation, but rather that GI also acts in the nucleus to more directly promote the expression of flowering-time genes. ..
  56. Iwakawa H, Shinmyo A, Sekine M. Arabidopsis CDKA;1, a cdc2 homologue, controls proliferation of generative cells in male gametogenesis. Plant J. 2006;45:819-31 pubmed
    ..Thus, CDKA;1 is essential for cell division of the generative cell in male gametogenesis. ..
  57. Yamada K, Yamashita Yamada M, Hirase T, Fujiwara T, Tsuda K, Hiruma K, et al. Danger peptide receptor signaling in plants ensures basal immunity upon pathogen-induced depletion of BAK1. EMBO J. 2016;35:46-61 pubmed publisher
    ..Thus, the PEPR pathway ensures basal resistance when MAMP-triggered defenses are compromised by BAK1 depletion. ..
  58. Taji T, Ohsumi C, Iuchi S, Seki M, Kasuga M, Kobayashi M, et al. Important roles of drought- and cold-inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. Plant J. 2002;29:417-26 pubmed
  59. Tamaoki M, Matsuyama T, Kanna M, Nakajima N, Kubo A, Aono M, et al. Differential ozone sensitivity among Arabidopsis accessions and its relevance to ethylene synthesis. Planta. 2003;216:552-60 pubmed
  60. Ishibashi T, Isogai M, Kiyohara H, Hosaka M, Chiku H, Koga A, et al. Higher plant RecA-like protein is homologous to RadA. DNA Repair (Amst). 2006;5:80-8 pubmed publisher
    ..An RNAi mutant of Arabidopsis thaliana RadA (AtRadA) was sensitive to mutagenic agents such as UV and MMC, suggesting that RadA functions in DNA repair...
  61. Noutoshi Y, Kuromori T, Wada T, Hirayama T, Kamiya A, Imura Y, et al. Loss of Necrotic Spotted Lesions 1 associates with cell death and defense responses in Arabidopsis thaliana. Plant Mol Biol. 2006;62:29-42 pubmed
    ..The possible modes of action of NSL1 protein in negative regulation of cell death programs and defense responses are discussed. ..
  62. Kobayashi Y, Hoekenga O, Itoh H, Nakashima M, Saito S, Shaff J, et al. Characterization of AtALMT1 expression in aluminum-inducible malate release and its role for rhizotoxic stress tolerance in Arabidopsis. Plant Physiol. 2007;145:843-52 pubmed
    ..Lastly, a natural nonsense mutation allele of AtALMT1 was identified from the Al-hypersensitive natural accession Warschau-1. ..
  63. Dubouzet J, Maeda S, Sugano S, Ohtake M, Hayashi N, Ichikawa T, et al. Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice. Plant Biotechnol J. 2011;9:466-85 pubmed publisher
    ..Our results demonstrate the utility of the rice-FOX Arabidopsis lines as a tool for the identification of genes involved in plant defence and suggest the presence of a defence mechanism common between monocots and dicots. ..
  64. Seo S, Gomi K, Kaku H, Abe H, Seto H, Nakatsu S, et al. Identification of natural diterpenes that inhibit bacterial wilt disease in tobacco, tomato and Arabidopsis. Plant Cell Physiol. 2012;53:1432-44 pubmed publisher
    ..These results suggest that multiple host factors are involved in the inhibition of bacterial wilt disease by sclareol-related compounds...
  65. Hayashida N, Mizoguchi T, Yamaguchi Shinozaki K, Shinozaki K. Characterization of a gene that encodes a homologue of protein kinase in Arabidopsis thaliana. Gene. 1992;121:325-30 pubmed
    ..From this comparison of aa sequences, the ATPK7 protein is considered to be a member of a novel subfamily of Ser/Thr PKs in plants. ..
  66. Fukaki H, Fujisawa H, Tasaka M. SGR1, SGR2, SGR3: novel genetic loci involved in shoot gravitropism in Arabidopsis thaliana. Plant Physiol. 1996;110:945-55 pubmed
    ..We conclude that SGR1, SGR2, and SGR3 are novel genetic loci specifically involved in the regulatory mechanisms of shoot gravitropism in A. thaliana. ..
  67. Yamaguchi S, Sun T, Kawaide H, Kamiya Y. The GA2 locus of Arabidopsis thaliana encodes ent-kaurene synthase of gibberellin biosynthesis. Plant Physiol. 1998;116:1271-8 pubmed
    ..Sequence analysis revealed that a C-2099 to T base substitution, which converts Gln-678 codon to a stop codon, is present in the AtKS cDNA from the ga2-1 mutant. Taken together, our results show that the GA2 locus encodes KS. ..
  68. Kajiwara T, Furutani M, Hibara K, Tasaka M. The GURKE gene encoding an acetyl-CoA carboxylase is required for partitioning the embryo apex into three subregions in Arabidopsis. Plant Cell Physiol. 2004;45:1122-8 pubmed
    ..Our results suggest that metabolites derived from malonyl-CoA are required for partitioning of the apical part of the embryo. ..
  69. Yamazoe A, Hayashi K, Kepinski S, Leyser O, Nozaki H. Characterization of terfestatin A, a new specific inhibitor for auxin signaling. Plant Physiol. 2005;139:779-89 pubmed
    ..Taken together, these results indicate that TrfA acts as a modulator of Aux/IAA stability and thus provides a new tool for dissecting auxin signaling. ..
  70. Furihata T, Maruyama K, Fujita Y, Umezawa T, Yoshida R, Shinozaki K, et al. Abscisic acid-dependent multisite phosphorylation regulates the activity of a transcription activator AREB1. Proc Natl Acad Sci U S A. 2006;103:1988-93 pubmed
    ..These results indicate that the ABA-dependent multisite phosphorylation of AREB1 regulates its own activation in plants. ..
  71. Naito T, Kiba T, Koizumi N, Yamashino T, Mizuno T. Characterization of a unique GATA family gene that responds to both light and cytokinin in Arabidopsis thaliana. Biosci Biotechnol Biochem. 2007;71:1557-60 pubmed
    ..Here we identified and characterized a unique gene, CGA1, encoding a GATA factor, whose expression was rapidly induced by both the light and cytokinin signals in Arabidopsis thaliana. ..
  72. Yokotani N, Higuchi M, Kondou Y, Ichikawa T, Iwabuchi M, Hirochika H, et al. A novel chloroplast protein, CEST induces tolerance to multiple environmental stresses and reduces photooxidative damage in transgenic Arabidopsis. J Exp Bot. 2011;62:557-69 pubmed publisher
    ..This paper discusses the relationship between the chloroplast protein CEST and photooxidative damage. ..
  73. Osakabe Y, Yamaguchi Shinozaki K, Shinozaki K, Tran L. Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress. J Exp Bot. 2013;64:445-58 pubmed publisher
  74. Mizoguchi T, Gotoh Y, Nishida E, Yamaguchi Shinozaki K, Hayashida N, Iwasaki T, et al. Characterization of two cDNAs that encode MAP kinase homologues in Arabidopsis thaliana and analysis of the possible role of auxin in activating such kinase activities in cultured cells. Plant J. 1994;5:111-22 pubmed
    ..These results suggest that auxin may function as an activator of plant MAP kinase homologues, as do various mitogens in animal systems. ..
  75. Kosugi S, Ohashi Y. E2Ls, E2F-like repressors of Arabidopsis that bind to E2F sites in a monomeric form. J Biol Chem. 2002;277:16553-8 pubmed
    ..Because the transcripts of E2Ls were abundant in meristematic rather than fully differentiated tissues, E2Ls may balance the activities of E2F.DP and play a role in restraining cell proliferation. ..
  76. Kasahara H, Takei K, Ueda N, Hishiyama S, Yamaya T, Kamiya Y, et al. Distinct isoprenoid origins of cis- and trans-zeatin biosyntheses in Arabidopsis. J Biol Chem. 2004;279:14049-54 pubmed
    ..Distinct origins of large proportions of DMAPP for tZ and cZ biosynthesis suggest that plants are able to separately modulate the level of these cytokinin species. ..
  77. Katagiri T, Ishiyama K, Kato T, Tabata S, Kobayashi M, Shinozaki K. An important role of phosphatidic acid in ABA signaling during germination in Arabidopsis thaliana. Plant J. 2005;43:107-17 pubmed
    ..These results suggest that PA is involved in ABA signaling and that AtLPP2 functions as a negative regulator upstream of ABI4, which encodes an AP2-type transcription factor, in ABA signaling during germination. ..
  78. Fujiwara S, Oda A, Yoshida R, Niinuma K, Miyata K, Tomozoe Y, et al. Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis. Plant Cell. 2008;20:2960-71 pubmed publisher
    ..SVP protein accumulated in lhy;cca1 plants under LL. We propose a model in which LHY and CCA1 accelerate flowering in part by reducing the abundance of SVP and thereby antagonizing its capacity to repress FT expression under LL. ..
  79. Golisz A, Sugano M, Hiradate S, Fujii Y. Microarray analysis of Arabidopsis plants in response to allelochemical L-DOPA. Planta. 2011;233:231-40 pubmed publisher
  80. Takahashi F, Mizoguchi T, Yoshida R, Ichimura K, Shinozaki K. Calmodulin-dependent activation of MAP kinase for ROS homeostasis in Arabidopsis. Mol Cell. 2011;41:649-60 pubmed publisher
    ..These findings suggest that two major activation modes in eukaryotes, Ca²+/CaMs and the MAP kinase phosphorylation cascade, converge at MPK8 to monitor or maintain an essential part of ROS homeostasis. ..
  81. Takahashi N, Kajihara T, Okamura C, Kim Y, Katagiri Y, Okushima Y, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr Biol. 2013;23:1812-7 pubmed publisher
  82. Tanaka K, Tozawa Y, Mochizuki N, Shinozaki K, Nagatani A, Wakasa K, et al. Characterization of three cDNA species encoding plastid RNA polymerase sigma factors in Arabidopsis thaliana: evidence for the sigma factor heterogeneity in higher plant plastids. FEBS Lett. 1997;413:309-13 pubmed
    ..This strongly suggests that light regulation of the nuclear encoded sigma factor genes is involved in light-dependent activation of plastid promoters. ..
  83. Maruyama K, Sakuma Y, Kasuga M, Ito Y, Seki M, Goda H, et al. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J. 2004;38:982-93 pubmed
    ..The recombinant DREB1A protein bound to A/GCCGACNT more efficiently than to A/GCCGACNA/G/C. ..
  84. Nagano M, Takahara K, Fujimoto M, Tsutsumi N, Uchimiya H, Kawai Yamada M. Arabidopsis sphingolipid fatty acid 2-hydroxylases (AtFAH1 and AtFAH2) are functionally differentiated in fatty acid 2-hydroxylation and stress responses. Plant Physiol. 2012;159:1138-48 pubmed publisher
    ..Our results suggest that AtFAH1 and AtFAH2 are functionally different FAHs, and that AtFAH1 or 2-hydroxy VLCFA is a key factor in AtBI-1-mediated cell death suppression. ..
  85. Yoshiyama K, Kobayashi J, Ogita N, Ueda M, Kimura S, Maki H, et al. ATM-mediated phosphorylation of SOG1 is essential for the DNA damage response in Arabidopsis. EMBO Rep. 2013;14:817-22 pubmed publisher
  86. Takahashi I, Kojima S, Sakaguchi N, Umeda Hara C, Umeda M. Two Arabidopsis cyclin A3s possess G1 cyclin-like features. Plant Cell Rep. 2010;29:307-15 pubmed publisher
    ..Our results suggest that Arabidopsis CYCA3;1 and CYCA3;2 are distinct members of the G1 cyclin family that play an important role in meristematic tissues. ..
  87. Tanaka T, Ida S, Irifune K, Oeda K, Morikawa H. Nucleotide sequence of a gene for nitrite reductase from Arabidopsis thaliana. DNA Seq. 1994;5:57-61 pubmed
    ..This conclusion was confirmed by the analysis using the RT-PCR method. The deduced amino acid sequence of the coding region of the Arabidopsis NiR gene had high similarities with those of NiR genes of other plants including spinach. ..
  88. Urao T, Yamaguchi Shinozaki K, Urao S, Shinozaki K. An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Plant Cell. 1993;5:1529-39 pubmed
    ..Binding was sequence specific, as indicated by a gel mobility shift experiment. These results suggest that a MYB-related transcription factor is involved in the regulation of genes that are responsive to water stress in Arabidopsis. ..
  89. Hirayama T, Shinozaki K. A cdc5+ homolog of a higher plant, Arabidopsis thaliana. Proc Natl Acad Sci U S A. 1996;93:13371-6 pubmed
    ..In addition, we cloned a PCR fragment corresponding to the DNA binding domain of human Cdc5-like protein. These results strongly suggest that Cdc5-like protein exists in all eukaryotes and may function in cell cycle regulation. ..
  90. Urao T, Noji M, Yamaguchi Shinozaki K, Shinozaki K. A transcriptional activation domain of ATMYB2, a drought-inducible Arabidopsis Myb-related protein. Plant J. 1996;10:1145-8 pubmed
    ..These results indicate that ATMYB2 acts as a transcriptional activator and that the C-terminal acidic region of ATMYB2 can function as a transcriptional activation domain. ..
  91. Adati N, Ito T, Sakaki Y, Shiokawa K. Isolation and expression study of a maternally expressed novel Xenopus gene Xem1 encoding a putative evolutionarily conserved membrane protein. Biochem Biophys Res Commun. 1997;238:899-904 pubmed
  92. Seo M, Akaba S, Oritani T, Delarue M, Bellini C, Caboche M, et al. Higher activity of an aldehyde oxidase in the auxin-overproducing superroot1 mutant of Arabidopsis thaliana. Plant Physiol. 1998;116:687-93 pubmed
    ..This result suggested that the higher activity of AO1 in sur1 mutant seedlings was not induced by IAA accumulation and, thus, strongly supports the possible role of AO1 in IAA biosynthesis in Arabidopsis seedlings. ..