Experts and Doctors on arabidopsis in China

Summary

Locale: China
Topic: arabidopsis

Top Publications

  1. Zhang L, Hu G, Cheng Y, Huang J. Heterotrimeric G protein alpha and beta subunits antagonistically modulate stomatal density in Arabidopsis thaliana. Dev Biol. 2008;324:68-75 pubmed publisher
    ..Taken together, these results suggest that the stomatal density in Arabidopsis is modulated by GPA1 and AGB1 in an antagonistic manner. ..
  2. Wang J, Tan S, Zhang L, Li P, Tian D. Co-variation among major classes of LRR-encoding genes in two pairs of plant species. J Mol Evol. 2011;72:498-509 pubmed publisher
    ..The presence of co-variation suggests that LRRs, combined with other domains, can work better in some common functions. In order to cooperate efficiently, there should be balanced gene numbers among the different gene classes. ..
  3. Hu D, Li M, Luo H, Dong Q, Yao Y, You C, et al. Molecular cloning and functional characterization of MdSOS2 reveals its involvement in salt tolerance in apple callus and Arabidopsis. Plant Cell Rep. 2012;31:713-22 pubmed publisher
    ..Finally, MdSOS2 overexpression enhanced, while its suppression reduced the tolerance to salt in transgenic apple calluses, indicating that MdSOS2 acts as a positive regulator in response to salt stress in apple. ..
  4. Shi H, Wei Y, He C. Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis. Plant Physiol Biochem. 2016;100:150-155 pubmed publisher
    ..Notably, the diurnal changes of endogenous melatonin may regulate corresponding changes of AtCBF/DREB1s expression and their underlying diurnal cycle of plant immunity and AtCCA1. ..
  5. Shi W, Chen X, Wang L, Gong Z, Li S, Li C, et al. Cellular and molecular insight into the inhibition of primary root growth of Arabidopsis induced by peptaibols, a class of linear peptide antibiotics mainly produced by Trichoderma spp. J Exp Bot. 2016;67:2191-205 pubmed publisher
    ..The cellular and molecular insight into the peptaibol-induced inhibition of plant root growth advances our understanding of Trichoderma-plant interactions. ..
  6. Bi Z, Li X, Huang H, Hua Y. Identification, Functional Study, and Promoter Analysis of HbMFT1, a Homolog of MFT from Rubber Tree (Hevea brasiliensis). Int J Mol Sci. 2016;17:247 pubmed publisher
    ..In addition, the HbMFT1 promoter can be utilized in controlling transgene expression in stamens and seeds of rubber tree or other plant species. ..
  7. Jin Y, Fan X, Li X, Zhang Z, Sun L, Fu Z, et al. Distinct physiological and molecular responses in Arabidopsis thaliana exposed to aluminum oxide nanoparticles and ionic aluminum. Environ Pollut. 2017;228:517-527 pubmed publisher
    ..This work provides an integrated understanding at the molecular and physiological level of the effects of nAl2O3 and ionic Al in Arabidopsis. ..
  8. Zheng C, Yang G, Wang D, Li H. [Identification and tissue-specific expression of a full length cDNA encoding ZIP protein in Arabidopsis]. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2002;34:109-12 pubmed
    ..Southern and Northern blot analysis indicated that AT103 was a single copy gene and the accumulation of mRNA was obviously different in leaves, stems and roots in Arabidopsis. ..
  9. Zhu C, Ding Y, Liu H. MiR398 and plant stress responses. Physiol Plant. 2011;143:1-9 pubmed publisher
    ..This review highlights recent progress in understanding the crucial role of miR398 in plant stress responses, and also includes a discussion of miR398-centered gene regulatory network. ..

More Information

Publications103 found, 100 shown here

  1. Zhang Y, Liu Z, Liu R, Hao H, Bi Y. Gibberellins negatively regulate low temperature-induced anthocyanin accumulation in a HY5/HYH-dependent manner. Plant Signal Behav. 2011;6:632-4 pubmed
    ..From these data we propose that, together with HY5/HYH, GA signaling may play an important role during low temperature-induced anthocyanin accumulation. ..
  2. He J, Ma X, Zhang Y, Sun T, Xu F, Chen Y, et al. Role and interrelationship of G? protein, hydrogen peroxide, and nitric oxide in ultraviolet B-induced stomatal closure in Arabidopsis leaves. Plant Physiol. 2013;161:1570-83 pubmed publisher
    ..These findings establish a signaling pathway leading to UV-B-induced stomatal closure that involves GPA1-dependent activation of H2O2 production and subsequent Nia1-dependent NO accumulation. ..
  3. Shi H, Chan Z. In vivo role of Arabidopsis arginase in arginine metabolism and abiotic stress response. Plant Signal Behav. 2013;8:e24138 pubmed publisher
    ..It is likely that accumulation of both NO and polyamines might activate abiotic stress responses in the plant. ..
  4. Qiang Y, Wu J, Han H, Wang G. CLE peptides in vascular development. J Integr Plant Biol. 2013;55:389-94 pubmed publisher
    ..The perspective of CLE peptide signaling in vascular development is also discussed. ..
  5. Zhang X, Yang Z, Zhang J, Zhang L. Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana. Int J Mol Sci. 2013;14:14872-91 pubmed publisher
    ..These results from the present research help to reveal the molecular mechanism of BraYAB1-702 gene in the establishment of adaxial-abaxial polarity of the lateral organs in Chinese cabbage. ..
  6. Zhu J, Li Y, Cao D, Yang H, Oh E, Bi Y, et al. The F-box Protein KIB1 Mediates Brassinosteroid-Induced Inactivation and Degradation of GSK3-like Kinases in Arabidopsis. Mol Cell. 2017;66:648-657.e4 pubmed publisher
    ..Our study demonstrates that KIB1 plays an essential role in BR signaling by inhibiting BIN2 through dual mechanisms of blocking substrate access and promoting degradation. ..
  7. Peng Y, Chen L, Lu Y, Ma W, Tong Y, Li Y. DAR2 acts as an important node connecting cytokinin, auxin, SHY2 and PLT1/2 in root meristem size control. Plant Signal Behav. 2013;8:e24226 pubmed publisher
    ..Here, we discuss the possible molecular mechanisms by which Arabidopsis DAR2 controls root meristem size. ..
  8. Jiang S, Mei C, Wang X, Zhang D. A hub for ABA signaling to the nucleus: significance of a cytosolic and nuclear dual-localized PPR protein SOAR1 acting downstream of Mg-chelatase H subunit. Plant Signal Behav. 2014;9:e972899 pubmed publisher
  9. Wang L, Cheng M, Chu Y, Li X, Chen D, Huang X, et al. Responses of plant calmodulin to endocytosis induced by rare earth elements. Chemosphere. 2016;154:408-415 pubmed publisher
    ..Our results provide a reference for revealing the action mechanisms of REEs in plant cells. ..
  10. Tang X, Wang H, Chu L, Shao H. KvLEA, a New Isolated Late Embryogenesis Abundant Protein Gene from Kosteletzkya virginica Responding to Multiabiotic Stresses. Biomed Res Int. 2016;2016:9823697 pubmed publisher
    ..virginica. This research not only enriched studies on LEA gene in plant but also would accelerate more studies on K. virginica in the future. ..
  11. Chye M. Arabidopsis cDNA encoding a membrane-associated protein with an acyl-CoA binding domain. Plant Mol Biol. 1998;38:827-38 pubmed
    ..Northern blot analysis showed that the 1.4 kb ACBP1 mRNA was expressed in silique, root, stem, leaf and flower. Results from Southern blot analysis of genomic DNA suggest the presence of at least two genes encoding ACBPs in Arabidopsis. ..
  12. Feng X, Zhao Q, Zhao L, Qiao Y, Xie X, Li H, et al. The cold-induced basic helix-loop-helix transcription factor gene MdCIbHLH1 encodes an ICE-like protein in apple. BMC Plant Biol. 2012;12:22 pubmed publisher
    ..Based on these findings, MdCIbHLH1 encodes a transcription factor that is important for the cold tolerance response in apple. ..
  13. Li W, Shao G, Lam H. Ectopic expression of GmPAP3 alleviates oxidative damage caused by salinity and osmotic stresses. New Phytol. 2008;178:80-91 pubmed publisher
    ..Furthermore, PQ-induced lipid peroxidation in these transgenic seedlings was also reduced. In summary, the mitochondrial localized GmPAP3 may play a role in stress tolerance by enhancing ROS scavenging. ..
  14. Guo D, Wong W, Xu W, Sun F, Qing D, Li N. Cis-cinnamic acid-enhanced 1 gene plays a role in regulation of Arabidopsis bolting. Plant Mol Biol. 2011;75:481-95 pubmed publisher
    ..The zce1 loss-of-function mutant produced via the RNA-interference technique produces an earlier bolting phenotype in Arabidopsis, suggesting that ZCE1 plays a role in promoting vegetative growth and delay flowering. ..
  15. An X, Tian Y, Chen K, Wang X, Hao Y. The apple WD40 protein MdTTG1 interacts with bHLH but not MYB proteins to regulate anthocyanin accumulation. J Plant Physiol. 2012;169:710-7 pubmed publisher
    ..Taken together, these results suggest that the apple WD40 protein MdTTG1 interacts with bHLH but not MYB proteins to regulate anthocyanin accumulation. ..
  16. Deng X, Lu T, Wang L, Gu L, Sun J, Kong X, et al. Recruitment of the NineTeen Complex to the activated spliceosome requires AtPRMT5. Proc Natl Acad Sci U S A. 2016;113:5447-52 pubmed publisher
  17. Shi J, Zhang L, An H, Wu C, Guo X. GhMPK16, a novel stress-responsive group D MAPK gene from cotton, is involved in disease resistance and drought sensitivity. BMC Mol Biol. 2011;12:22 pubmed publisher
    ..These results suggest that GhMPK16 might be involved in multiple signal transduction pathways, including biotic and abiotic stress signaling pathways. ..
  18. Zhang Y, Li S, Zhou L, Fox E, Pao J, Sun W, et al. Overexpression of Arabidopsis thaliana PTEN caused accumulation of autophagic bodies in pollen tubes by disrupting phosphatidylinositol 3-phosphate dynamics. Plant J. 2011;68:1081-92 pubmed publisher
    ..Our results show that PTEN regulates autophagy through phylum-specific molecular mechanisms. ..
  19. Kong X, Lv W, Zhang D, Jiang S, Zhang S, Li D. Genome-wide identification and analysis of expression profiles of maize mitogen-activated protein kinase kinase kinase. PLoS ONE. 2013;8:e57714 pubmed publisher
    ..Our genomics analysis of maize MAPKKK genes provides important information for evolutionary and functional characterization of this family in maize. ..
  20. Li Y, Mao K, Zhao C, Zhao X, Zhang H, Shu H, et al. MdCOP1 ubiquitin E3 ligases interact with MdMYB1 to regulate light-induced anthocyanin biosynthesis and red fruit coloration in apple. Plant Physiol. 2012;160:1011-22 pubmed publisher
    ..Our findings provide new insight into the mechanism by which light controls anthocyanin accumulation and red fruit coloration in apple and even other plant species. ..
  21. Wang J, Zhang X, Yan G, Zhou Y, Zhang K. Over-expression of the PaAP1 gene from sweet cherry (Prunus avium L.) causes early flowering in Arabidopsis thaliana. J Plant Physiol. 2013;170:315-20 pubmed publisher
    ..This study provides the first functional analysis of an SQUA/AP1 homolog from P. avium and suggests that PaAP1 is potentially useful for shortening the juvenile period in sweet cherry. ..
  22. Wang X, Li W, Piqueras R, Cao K, Deng X, Wei N. Regulation of COP1 nuclear localization by the COP9 signalosome via direct interaction with CSN1. Plant J. 2009;58:655-67 pubmed publisher
    ..This study advances our understanding of COP1 localization, and the molecular interactions between COP1 and CSN. ..
  23. Zhao M, Ding H, Zhu J, Zhang F, Li W. Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New Phytol. 2011;190:906-15 pubmed publisher
    ..N sensitivity of 35S::MIR169a might be attributable to impaired uptake systems. These results provide evidence that miRNAs have functional roles in helping plants to cope with fluctuations in N availability in the soil. ..
  24. Wang C, Yan X, Chen Q, Jiang N, Fu W, Ma B, et al. Clathrin light chains regulate clathrin-mediated trafficking, auxin signaling, and development in Arabidopsis. Plant Cell. 2013;25:499-516 pubmed publisher
    ..These results suggest that CLCs are key regulators in clathrin-mediated trafficking downstream of ABP1-mediated signaling and thus play a critical role in membrane trafficking from the TGN/EE and PM during plant development. ..
  25. Li X, Su Y, Zhao X, Li W, Gao X, Zhang X. Cytokinin overproduction-caused alteration of flower development is partially mediated by CUC2 and CUC3 in Arabidopsis. Gene. 2010;450:109-20 pubmed publisher
    ..Thus, it is likely that the CUC2 and CUC3 expression mediated by AHK2 and AHK3 signaling may play roles in regulation of flower development. ..
  26. Li S, Ge F, Xu M, Zhao X, Huang G, Zhou L, et al. Arabidopsis COBRA-LIKE 10, a GPI-anchored protein, mediates directional growth of pollen tubes. Plant J. 2013;74:486-97 pubmed publisher
    ..Our results that COBL10 is critical for directional growth of pollen tubes suggest that they play critical roles in cell-cell communications in plants. ..
  27. Zhao X, Yang X, Pei S, He G, Wang X, Tang Q, et al. The Miscanthus NAC transcription factor MlNAC9 enhances abiotic stress tolerance in transgenic Arabidopsis. Gene. 2016;586:158-69 pubmed publisher
  28. Shi H, Wei Y, Wang Q, Reiter R, He C. Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J Pineal Res. 2016;60:373-9 pubmed publisher
    ..Taken together, this study provides direct link between melatonin and floral transition, and indicates the novel involvement of DELLAs-activated FLC in melatonin-mediated flowering in Arabidopsis. ..
  29. Fu L, Han B, Tan D, Wang M, Ding M, Zhang J. Identification and Evolution of Functional Alleles of the Previously Described Pollen Specific Myrosinase Pseudogene AtTGG6 in Arabidopsis thaliana. Int J Mol Sci. 2016;17:262 pubmed publisher
    ..However, the defense function may have become less critical after A. thaliana evolved to self-fertilization, and thus resulted in loss of function in most ecotypes. ..
  30. Xu R, Qi S, Lu L, Chen C, Wu C, Zheng C. A DExD/H box RNA helicase is important for K+ deprivation responses and tolerance in Arabidopsis thaliana. FEBS J. 2011;278:2296-306 pubmed publisher
    ..Taken together, these results provide information for the functional analysis of plant DEVH box RNA helicases, and suggest that AtHELPS, as an important negative regulator, plays a role in K(+) deprivation stress. ..
  31. Li M, Zhang Y, Zhang Z, Ji X, Zhang R, Liu D, et al. Hypersensitive ethylene signaling and ZMdPG1 expression lead to fruit softening and dehiscence. PLoS ONE. 2013;8:e58745 pubmed publisher
  32. Li L, Lu S, Li R. The Arabidopsis endoplasmic reticulum associated degradation pathways are involved in the regulation of heat stress response. Biochem Biophys Res Commun. 2017;487:362-367 pubmed publisher
    ..Taken together, our data not only unravels key insights into the crosstalk between different protein quality control processes, but also provides candidate genes to genetically improve plant heat tolerance in the future. ..
  33. Ye R, Wang W, Iki T, Liu C, Wu Y, Ishikawa M, et al. Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes. Mol Cell. 2012;46:859-70 pubmed publisher
    ..Our findings reveal an unsuspected cytoplasmic step in the RdDM pathway. We propose that selective nuclear import of mature AGO4/siRNA complexes is a key regulatory point prior to the effector stage of RdDM. ..
  34. Zhou L, Li S, Feng Q, Zhang Y, Zhao X, Zeng Y, et al. Protein S-ACYL Transferase10 is critical for development and salt tolerance in Arabidopsis. Plant Cell. 2013;25:1093-107 pubmed publisher
    ..We propose that PAT10-mediated palmitoylation is critical for vacuolar function by regulating membrane association or the activities of tonoplast proteins...
  35. Chen K, Xu M, Li G, Liang H, Xia Z, Liu X, et al. Identification of AtENT3 as the main transporter for uridine uptake in Arabidopsis roots. Cell Res. 2006;16:377-88 pubmed
  36. Yang L, Huang W, Wang H, Cai R, Xu Y, Huang H. Characterizations of a hypomorphic argonaute1 mutant reveal novel AGO1 functions in Arabidopsis lateral organ development. Plant Mol Biol. 2006;61:63-78 pubmed
    ..Our results demonstrate several important AGO1 functions in plant lateral organ development. ..
  37. Fan J, Li W, Dong X, Guo W, Shu H. Ectopic expression of a hyacinth AGL6 homolog caused earlier flowering and homeotic conversion in Arabidopsis. Sci China C Life Sci. 2007;50:676-89 pubmed
    ..These results indicated that HoAGL6 was involved in the regulation of flower transition and flower organ formation...
  38. Ji Q, Wang J, Jiang L, Shen S, Fan Y, Zhang C. [Identification of glucose-responsive elements in the promoter of UDP-L-rhamnose biosynthesis gene RHM1 in Arabidopsis thaliana]. Sheng Wu Gong Cheng Xue Bao. 2008;24:1531-7 pubmed
  39. Chen P, Jäger G, Zheng B. Transfer RNA modifications and genes for modifying enzymes in Arabidopsis thaliana. BMC Plant Biol. 2010;10:201 pubmed publisher
    ..We conclude that the method established in this study will facilitate the identification of tRNA modification genes in a wide variety of plant species. ..
  40. Su Y, Liu Y, Zhang X. Auxin-cytokinin interaction regulates meristem development. Mol Plant. 2011;4:616-25 pubmed publisher
    ..The frameworks for the complicated interaction of these two hormones in the control of shoot apical meristem and root apical meristem formation as well as their roles in in vitro organ regeneration are the major focus of this review. ..
  41. Wang L, Yu X, Wang H, Lu Y, de Ruiter M, Prins M, et al. A novel class of heat-responsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa). BMC Genomics. 2011;12:289 pubmed publisher
  42. Feng W, Wang L, Lu Y, Wang X. A protein oxidase catalysing disulfide bond formation is localized to the chloroplast thylakoids. FEBS J. 2011;278:3419-30 pubmed publisher
    ..These studies may help to resolve some of the issues surrounding the structure and function of AtVKOR-DsbA in Arabidopsis chloroplasts...
  43. Li B, Gao R, Cui R, L B, Li X, Zhao Y, et al. Tobacco TTG2 suppresses resistance to pathogens by sequestering NPR1 from the nucleus. J Cell Sci. 2012;125:4913-22 pubmed publisher
    ..These results suggest that NtTTG2 represses SA/NPR1-regulated defence by sequestering NPR1 from the nucleus and the transcriptional activation of the defence-response genes...
  44. Zhu L, Liu D, Li Y, Li N. Functional phosphoproteomic analysis reveals that a serine-62-phosphorylated isoform of ethylene response factor110 is involved in Arabidopsis bolting. Plant Physiol. 2013;161:904-17 pubmed publisher
  45. Dai Z, Liu Y, Zhang X, Shi M, Wang B, Wang D, et al. Metabolic engineering of Saccharomyces cerevisiae for production of ginsenosides. Metab Eng. 2013;20:146-56 pubmed publisher
    ..94 mg/g DCW dammarenediol-II (1548 mg/L). The yeast strains engineered in this work can serve as the basis for creating an alternative way for production of ginsenosides in place of extraction from plant sources. ..
  46. Yang C, Hu H, Ren H, Kong Y, Lin H, Guo J, et al. LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis. Plant Cell. 2016;28:712-28 pubmed publisher
    ..In rice (Oryza sativa), photosynthetic capacity of lir1 plants was slightly impaired, whereas no such effect was observed in Arabidopsis thaliana knockout mutants. The consequences of LIR1 deficiency in different species are discussed. ..
  47. Chen G, Bi Y, Li N. EGY1 encodes a membrane-associated and ATP-independent metalloprotease that is required for chloroplast development. Plant J. 2005;41:364-75 pubmed
  48. Lin X, Chow T, Chen H, Liu C, Chou S, Huang B, et al. Understanding bamboo flowering based on large-scale analysis of expressed sequence tags. Genet Mol Res. 2010;9:1085-93 pubmed publisher
    ..Our data lead us to conclude that bamboo may have its own unique flowering genes. This information can help us understand bamboo flowering and provides useful experimental methods to study the mechanisms involved...
  49. Ai T, Zhang L, Gao Z, Zhu C, Guo X. Highly efficient virus resistance mediated by artificial microRNAs that target the suppressor of PVX and PVY in plants. Plant Biol (Stuttg). 2011;13:304-16 pubmed publisher
    ..Together, our findings indicate that transgenic plants with multiple virus-specific resistance can be obtained through co-expression of several amiRNAs targeting multiple viruses. ..
  50. Niu Y, Jin C, Jin G, Zhou Q, Lin X, Tang C, et al. Auxin modulates the enhanced development of root hairs in Arabidopsis thaliana (L.) Heynh. under elevated CO(2). Plant Cell Environ. 2011;34:1304-17 pubmed publisher
    ..Our study suggests that elevated CO(2) enhanced the development of root hairs in Arabidopsis via the well-characterized auxin signalling and transport that modulate the initiation of root hairs and the expression of its specific genes. ..
  51. Wang R, Li L, Cao Z, Zhao Q, Li M, Zhang L, et al. Molecular cloning and functional characterization of a novel apple MdCIPK6L gene reveals its involvement in multiple abiotic stress tolerance in transgenic plants. Plant Mol Biol. 2012;79:123-35 pubmed publisher
    ..Therefore, MdCIPK6L functions in stress tolerance crossing the species barriers, and is supposed to be a potential candidate gene to improve stress tolerance by genetic manipulation in apple and other crops. ..
  52. Xu X, Chen H, Sang Y, Wang F, Ma J, Gao X, et al. Identification of genes specifically or preferentially expressed in maize silk reveals similarity and diversity in transcript abundance of different dry stigmas. BMC Genomics. 2012;13:294 pubmed publisher
    ..A comparative analysis of expression profiles between maize silk and dry stigmas of other species might reveal conserved and diverse mechanisms that underlie stigma-mediated reproductive processes in various plant species...
  53. Huang G, Han Y, Fu Y. [Expression and functional analysis of SUA41gene in Arabidopsis thaliana]. Yi Chuan. 2013;35:93-100 pubmed
    ..The results showed that the SUA41 gene plays a role in not only the autonomous pathway but also the thermosensory pathway to regulate flowering time of Arabidopsis. ..
  54. Cheng F, Hu T, An Y, Huang J, Xu Y. Purification and enzymatic characterization of alcohol dehydrogenase from Arabidopsis thaliana. Protein Expr Purif. 2013;90:74-7 pubmed publisher
    ..This broad spectrum in alcohol selection and the observed higher catalytic activity (high Vmax (EtOH)) may result from the requirement of the single enzyme to accommodate many substrates. ..
  55. Su L, Li J, Liu D, Zhai Y, Zhang H, Li X, et al. A novel MYB transcription factor, GmMYBJ1, from soybean confers drought and cold tolerance in Arabidopsis thaliana. Gene. 2014;538:46-55 pubmed publisher
    ..These results indicate that GmMYBJ1 has the potential to be utilized in transgenic breeding lines to improve abiotic stress tolerance. ..
  56. Wang Y, Zheng X, Yu B, Han S, Guo J, Tang H, et al. Disruption of microtubules in plants suppresses macroautophagy and triggers starch excess-associated chloroplast autophagy. Autophagy. 2015;11:2259-74 pubmed publisher
    ..Our findings reveal that an intact microtubule network is important for efficient macroautophagy and leaf starch degradation. ..
  57. Li S, Yang Z, Du X, Liu R, Wilkinson A, Gozani O, et al. Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette. Structure. 2016;24:486-94 pubmed publisher
    ..Such recognition may contribute to epigenetic regulation of the initiation of DNA replication. ..
  58. Xu X, Liang K, Li H, Liu H, Cao Q, Shen Y. Plant E3 ligases ubiquitinate Escherichia coli ?32in vitro. Biochem Biophys Res Commun. 2017;490:1232-1236 pubmed publisher
    ..These results suggest that the substrates of plant E3 ligases can be prokaryotic protein and therefore the plant ubiquitylation system may have evolved from prokaryote. ..
  59. Tan G, Gao Y, Shi M, Zhang X, He S, Chen Z, et al. SiteFinding-PCR: a simple and efficient PCR method for chromosome walking. Nucleic Acids Res. 2005;33:e122 pubmed
    ..To demonstrate the feasibility and efficiency of SiteFinding-PCR, we employed this method to do chromosome walking and obtained 16 positive results from 17 samples. ..
  60. Qiao W, Zhao X, Li W, Luo Y, Zhang X. Overexpression of AeNHX1, a root-specific vacuolar Na+/H+ antiporter from Agropyron elongatum, confers salt tolerance to Arabidopsis and Festuca plants. Plant Cell Rep. 2007;26:1663-72 pubmed
    ..Similarly, AeNHX1 also functioned in transgenic Festuca plants. The results suggest that this gene might function in the roots of Agropyron plants, and its expression is involved in the improvement of salt tolerance...
  61. Su Y, Zhao X, Liu Y, Zhang C, O Neill S, Zhang X. Auxin-induced WUS expression is essential for embryonic stem cell renewal during somatic embryogenesis in Arabidopsis. Plant J. 2009;59:448-60 pubmed publisher
    ..This study sheds new light on how auxin regulates stem cell formation during somatic embryogenesis. ..
  62. Yang Y, Zhang H, Li G, Li W, Wang X, Song F. Ectopic expression of MgSM1, a Cerato-platanin family protein from Magnaporthe grisea, confers broad-spectrum disease resistance in Arabidopsis. Plant Biotechnol J. 2009;7:763-77 pubmed publisher
    ..Our study also provides a novel strategy to generate environment-friendly crops with enhanced broad-spectrum resistance through ectopic expression of microbe-derived disease resistance-inducing proteins. ..
  63. Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, et al. Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science. 2010;330:1549-1551 pubmed publisher
    ..These attributes comprise a genomic signature of evolution toward obligate biotrophy...
  64. Chen L, Liao B, Qi H, Xie L, Huang L, Tan W, et al. Autophagy contributes to regulation of the hypoxia response during submergence in Arabidopsis thaliana. Autophagy. 2015;11:2233-46 pubmed publisher
    ..Together, our findings demonstrate that submergence-induced autophagy functions in the hypoxia response in Arabidopsis by modulating SA-mediated cellular homeostasis. ..
  65. Zhang Y, Li C, Zhang J, Wang J, Yang J, Lv Y, et al. Dissection of HY5/HYH expression in Arabidopsis reveals a root-autonomous HY5-mediated photomorphogenic pathway. PLoS ONE. 2017;12:e0180449 pubmed publisher
    ..Collectively, these results indicate that an organ-specific HY5-mediated pathway controls root photomorphogenic development independently of light signaling in the shoot. ..
  66. Xu H, Li X, Li Q, Bai S, Lu W, Zhang X. Characterization of HoMADS 1 and its induction by plant hormones during in vitro ovule development in Hyacinthus orientalis L. Plant Mol Biol. 2004;55:209-20 pubmed
    ..Whether HoMADS 1 expression is also regulated by cytokinin and auxin during ovule development in planta remains to be investigated...
  67. Fu Y, Xu T, Zhu L, Wen M, Yang Z. A ROP GTPase signaling pathway controls cortical microtubule ordering and cell expansion in Arabidopsis. Curr Biol. 2009;19:1827-32 pubmed publisher
    ..ROP6 directly binds and activates MT-associated RIC1 to achieve the MT ordering. The ROP6-RIC1 pathway also affects MT ordering of hypocotyl cells, showing a broad role for this pathway in the spatial regulation of cell expansion. ..
  68. Wang X, Xue L, Sun J, Zuo J. The Arabidopsis BE1 gene, encoding a putative glycoside hydrolase localized in plastids, plays crucial roles during embryogenesis and carbohydrate metabolism. J Integr Plant Biol. 2010;52:273-88 pubmed publisher
    ..The be1-3 phenotype can be partially rescued by glucose, fructose or sucrose, implying the involvement of BE1 in carbohydrate metabolism in plastids. ..
  69. Zhang J, Lu H, Li X, Li Y, Cui H, Wen C, et al. Effector-triggered and pathogen-associated molecular pattern-triggered immunity differentially contribute to basal resistance to Pseudomonas syringae. Mol Plant Microbe Interact. 2010;23:940-8 pubmed publisher
    ..syringae pv. tabaci, indicating that ETI and PTI act synergistically during nonhost resistance. Thus, both nonhost resistance and basal resistance to virulent bacteria can be unified under PTI and ETI. ..
  70. Chen D, Liu J, Liu J, Chen X. Evolution of the catalytic activity of Arabidopsis thaliana glutathione transferase zeta class-1 by saturation mutagenesis. Biosci Biotechnol Biochem. 2010;74:1458-61 pubmed
    ..Our results also suggest that the specific shape of the active site in AtGSTZ-1 is essential to its unique DCA-DC activity. ..
  71. Hou W, Duan C, Fang R, Zhou X, Guo H. Satellite RNA reduces expression of the 2b suppressor protein resulting in the attenuation of symptoms caused by Cucumber mosaic virus infection. Mol Plant Pathol. 2011;12:595-605 pubmed publisher
    ..Our data provide evidence that a plant silencing mechanism is involved in the pathogenicity of satRNA...
  72. Peng D, Qiu D, Ruan L, Zhou C, Sun M. Protein elicitor PemG1 from Magnaporthe grisea induces systemic acquired resistance (SAR) in plants. Mol Plant Microbe Interact. 2011;24:1239-46 pubmed publisher
    ..Our findings reveal that PemG1 protein can function as an activator of plant disease resistance, and the PemG1-mediated systemic acquired resistance is modulated by SA- and Ca(2+)-related signaling pathways. ..
  73. Li W, Liu H, Cheng Z, Su Y, Han H, Zhang Y, et al. DNA methylation and histone modifications regulate de novo shoot regeneration in Arabidopsis by modulating WUSCHEL expression and auxin signaling. PLoS Genet. 2011;7:e1002243 pubmed publisher
    ..The study demonstrates that, although molecular components involved in organogenesis are divergently evolved in plants and animals, epigenetic modifications play an evolutionarily convergent role in this process. ..
  74. Zhao H, Wang X, Zhu D, Cui S, Li X, Cao Y, et al. A single amino acid substitution in IIIf subfamily of basic helix-loop-helix transcription factor AtMYC1 leads to trichome and root hair patterning defects by abolishing its interaction with partner proteins in Arabidopsis. J Biol Chem. 2012;287:14109-21 pubmed publisher
  75. Qian W, Miki D, Zhang H, Liu Y, Zhang X, Tang K, et al. A histone acetyltransferase regulates active DNA demethylation in Arabidopsis. Science. 2012;336:1445-8 pubmed publisher
    ..Our study reveals how some genes are indicated by multiple epigenetic marks for active DNA demethylation and protection from silencing. ..
  76. Du H, Yang S, Liang Z, Feng B, Liu L, Huang Y, et al. Genome-wide analysis of the MYB transcription factor superfamily in soybean. BMC Plant Biol. 2012;12:106 pubmed publisher
  77. Cheng Z, Wang L, Sun W, Zhang Y, Zhou C, Su Y, et al. Pattern of auxin and cytokinin responses for shoot meristem induction results from the regulation of cytokinin biosynthesis by AUXIN RESPONSE FACTOR3. Plant Physiol. 2013;161:240-51 pubmed publisher
  78. Huang C, Miki D, Tang K, Zhou H, Zheng Z, Chen W, et al. A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis. PLoS Genet. 2013;9:e1003779 pubmed publisher
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