Experts and Doctors on molecular sequence data in Beijing, China


Locale: Beijing, China
Topic: molecular sequence data

Top Publications

  1. Cao H, Liu Y, Fushimi -, Komatsu K. [Identification of notoginseng(Panax notoginseng) and its adulterants using DNA sequencing]. Zhong Yao Cai. 2001;24:398-402 pubmed
    ..Multiple sequence alignment shows that there are much sequence variation between notoginseng and its adulterants. DNA sequencing is an accurate and reliable method in origin identification of the genuine notoginseng. ..
  2. Sun X, Ma L, Xie Y, Zhu X. Keratin 1 and keratin 10 mutations causing epidermolytic hyperkeratosis in Chinese patients. J Dermatol Sci. 2002;29:195-200 pubmed
    ..And palmoplantar keratoderma (PPKD) can be an accompanied symptom caused by either K1 or K10 mutation. ..
  3. Deng H, Guo R, Li W, Zhao M, Lu Y. Matrix metalloproteinase 11 depletion inhibits cell proliferation in gastric cancer cells. Biochem Biophys Res Commun. 2005;326:274-81 pubmed
    ..These results provide new insights into the function of MMP11 and suggest that MMP11 may play an important role in the control of cell proliferation and tumor development in GC. ..
  4. Wang H, Liu D, Sun J, Zhang A. Asparagine synthetase gene TaASN1 from wheat is up-regulated by salt stress, osmotic stress and ABA. J Plant Physiol. 2005;162:81-9 pubmed publisher
    ..TaASN1 was dramatically induced by salinity, osmotic stress and exogenous abscisic acid (ABA) in wheat seedlings. TaASN2 transcripts were very low in all detected tissues and conditions and were only slightly induced by ABA in roots...
  5. Liu S, Ai C, Ge Z, Liu H, Liu B, He S, et al. Molecular cloning and bioinformatic analysis of SPATA4 gene. J Biochem Mol Biol. 2005;38:739-47 pubmed
    ..This research is a fundamental work in the fields of the bioinformational analysis, and also put forward a new way for the bioinformatic analysis of other genes...
  6. Xiong Z, Tang X, Yang F, Zhang X, Yang J, Chen L, et al. Comparison of the virulence plasmid genomes of two strains of Shigella which lost the ability to bind Congo red. Sci China C Life Sci. 2006;49:141-8 pubmed
    ..Whether these genes determine the Crb function requires continued investigation. ..
  7. Li X, Zhu Z, Mo D, Wang H, Yang S, Zhao S, et al. Comparative molecular characterization of ADSS1 and ADSS2 genes in pig (Sus scrofa). Comp Biochem Physiol B Biochem Mol Biol. 2007;147:271-7 pubmed
    ..Moreover, we found that one single nucleotide polymorphism (SNP, T/C(70)) in the ninth intron of ADSS2 gene was significantly associated with average daily gain trait (ADG, P<0.05) and loin muscle area trait (P<0.05). ..
  8. Qin T, Ren L, Hu X, Guo Y, Fei J, Zhu Q, et al. Genomic organization of the immunoglobulin light chain gene loci in Xenopus tropicalis: evolutionary implications. Dev Comp Immunol. 2008;32:156-65 pubmed
  9. Liu N, Zhang Z. Identified a novel allele HLA-A*240212 by sequence-based typing. Tissue Antigens. 2007;70:516-7 pubmed
    ..The A*240212 allele differs from the most closely matching allele A*24020101 by one nucleotide substitution in Exon 2, at position 230, while the nucleotide exchange is silent mutation. ..

More Information

Publications595 found, 100 shown here

  1. He X, Qin Y, Xu Y, Hu C, Zhu Y. Molecular cloning, expression profiling, and yeast complementation of 19 beta-tubulin cDNAs from developing cotton ovules. J Exp Bot. 2008;59:2687-95 pubmed publisher
    ..This study suggests that the proteins encoded by cotton GhTUBs are involved during cotton fibre development...
  2. Han T, Han L, Wu L, Chen W, Sui X, Gu J, et al. Mesorhizobium gobiense sp. nov. and Mesorhizobium tarimense sp. nov., isolated from wild legumes growing in desert soils of Xinjiang, China. Int J Syst Evol Microbiol. 2008;58:2610-8 pubmed publisher
  3. Yuan J, Ma J, Zheng H, Shi T, Sun W, Zhang Q, et al. Overexpression of OLC1, cigarette smoke, and human lung tumorigenesis. J Natl Cancer Inst. 2008;100:1592-605 pubmed publisher
    ..of colonies of H520 cells transfected with siRNAs, negative vs s1: 103 vs 24, difference = 79, 95% CI = 40 to 116, P = .005). OLC1 is a candidate oncogene in lung cancer whose expression may be regulated by exposure to cigarette smoke. ..
  4. Jia W, Lu Z, Fu Y, Wang H, Wang L, Chi H, et al. A strategy for precise and large scale identification of core fucosylated glycoproteins. Mol Cell Proteomics. 2009;8:913-23 pubmed publisher
  5. Liu K, Wang J, Bu D, Zhao S, McSweeney C, Yu P, et al. Isolation and biochemical characterization of two lipases from a metagenomic library of China Holstein cow rumen. Biochem Biophys Res Commun. 2009;385:605-11 pubmed publisher
    ..The novel phylogenetic affiliation and high specificity of both enzymes for long-chain fatty acid make them interesting targets for manipulation of rumen lipid metabolism. ..
  6. Zhang Y, Wang D, Yan D, Zhu S, Liu J, Wang H, et al. Molecular evidence of persistent epidemic and evolution of subgenotype B1 coxsackievirus A16-associated hand, foot, and mouth disease in China. J Clin Microbiol. 2010;48:619-22 pubmed publisher
    ..The annual evolution rate of CVA16 was estimated as approximately 0.91 x 10(-2) substitutions per synonymous nucleotide/year and is slightly lower than that of HEV71. ..
  7. Li Y, Zhu J, Zhai Z, Zhang Q. Endophytic bacterial diversity in roots of Phragmites australis in constructed Beijing Cuihu Wetland (China). FEMS Microbiol Lett. 2010;309:84-93 pubmed publisher
    ..Hence, this study demonstrates that within the diverse bacterial communities found in reed roots, endophytic strains might have a strong potential to enhance phytoremediation by reed wetlands. ..
  8. Wang L, Fu S, Zhang H, Ye X, Yu D, Deng Z, et al. Identification and isolation of Genotype-I Japanese encephalitis virus from encephalitis patients. Virol J. 2010;7:345 pubmed publisher
  9. Li J, Liu J, Zhou J, Xiang H. Functional evaluation of four putative DNA-binding regions in Thermoanaerobacter tengcongensis reverse gyrase. Extremophiles. 2011;15:281-91 pubmed publisher
    ..Taken together, we revealed that these putative DNA-contact regions affect the enzymatic activity of RG in different ways, and provided new insights into the structure and function of RG...
  10. Zhang B, Xie D, Jin Z. Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology. J Integr Plant Biol. 2012;54:73-86 pubmed publisher
  11. Xu D, Yang F, He H, Hu J, Lv X, Ma D, et al. Expression of TMEM166 protein in human normal and tumor tissues. Appl Immunohistochem Mol Morphol. 2013;21:543-52 pubmed publisher
    ..Our studies provide the basis for future investigations into cell-type-specific functions of this protein in human normal and tumor tissues. ..
  12. Li J, Li J, Miyahira A, Sun J, Liu Y, Cheng G, et al. Crystal structure of the ubiquitin-like domain of human TBK1. Protein Cell. 2012;3:383-91 pubmed publisher
    ..The varying surface charge distributions in the ULD domains of IKK and IKK-related kinases may be relevant to their specificity for specific partners. ..
  13. You Y, Yang X, Song Y, Yan X, Yuan Y, Li D, et al. Draft genome sequences of two Streptococcus pyogenes strains involved in abnormal sharp raised scarlet fever in China, 2011. J Bacteriol. 2012;194:5983-4 pubmed publisher
    ..The sequences will provide valuable information for comprehensive study of mechanisms related to this outbreak. ..
  14. Ge A, Shangguan L, Zhang X, Dong Q, Han J, Liu H, et al. Deep sequencing discovery of novel and conserved microRNAs in strawberry (FragariaƗananassa). Physiol Plant. 2013;148:387-96 pubmed publisher
    ..These results show that regulatory miRNAs exist in the agriculturally important cultivated strawberry and may play an important role in its growth, development and response to disease. ..
  15. Chao L, Lu L, Yang H, Zhu Y, Li Y, Wang Q, et al. Identification of a human protein-derived HIV-1 fusion inhibitor targeting the gp41 fusion core structure. PLoS ONE. 2013;8:e66156 pubmed publisher
  16. Sun X, Kang S, Zhang Y, Tan X, Yu Y, He H, et al. Genetic diversity and population structure of rice pathogen Ustilaginoidea virens in China. PLoS ONE. 2013;8:e76879 pubmed publisher
    ..In addition, genetic recombination and genetic isolation resulting from geographic separation was also found. ..
  17. Zhang B, Xiang S, Yin Y, Gu L, Deng D. C-terminal in Sp1-like artificial zinc-finger proteins plays crucial roles in determining their DNA binding affinity. BMC Biotechnol. 2013;13:106 pubmed publisher
    ..Altogether, the present study show that the C-terminal region may play crucial roles in determining the DNA binding affinity of Sp1-like artificial ZFPs. ..
  18. Zhou Y, Wan X, Wang H, Yan Z, Hou Y, Jin D. Bacterial scavengase p20 is structurally and functionally related to peroxiredoxins. Biochem Biophys Res Commun. 1997;233:848-52 pubmed
    ..Taken together, our findings strongly suggest that the p20 scavengases are structurally and functionally related to peroxiredoxins. ..
  19. Huang J, Teng L, Liu T, Li L, Chen D, Li F, et al. Identification of a novel serine/threonine kinase that inhibits TNF-induced NF-kappaB activation and p53-induced transcription. Biochem Biophys Res Commun. 2003;309:774-8 pubmed
    ..Our findings suggest that SHIK is a negative regulator of NF-kappaB- and p53-mediated gene transcription. ..
  20. Wu X, Tu P. Isolation and characterization of alpha-(1-->6)-glucans from Cistanche deserticola. J Asian Nat Prod Res. 2005;7:823-8 pubmed
    ..Their structures differ from that of linear starch...
  21. Shaw N, Zhao M, Cheng C, Xu H, Saarikettu J, Li Y, et al. The multifunctional human p100 protein 'hooks' methylated ligands. Nat Struct Mol Biol. 2007;14:779-84 pubmed
    ..Our studies suggest that a conserved aromatic cage hooks methyl groups of snRNPs and anchors p100 to the spliceosome. These structural insights partly explain the distinct roles of p100 in transcription and splicing. ..
  22. Jiang J, Zuo S, Zhang W, Wu X, Tang F, de Vlas S, et al. Prevalence and genetic diversities of hantaviruses in rodents in Beijing, China. Am J Trop Med Hyg. 2008;78:98-105 pubmed
    ..A strain detected from a trading center of agricultural products, which might be imported from other provinces, was genetically different from other strains of Beijing. ..
  23. Zhang X, Du P, Lu L, Xiao Q, Wang W, Cao X, et al. Contrasting effects of HC-Pro and 2b viral suppressors from Sugarcane mosaic virus and Tomato aspermy cucumovirus on the accumulation of siRNAs. Virology. 2008;374:351-60 pubmed publisher
    ..Thus, HC-Pro, an RNA silencing suppressor encoded by SCMV, regulates the accumulation of different siRNAs and has more than one target in the RNA silencing pathway...
  24. Shi J, Bao S, Yin J, Cai K, Hou X, Xiao L, et al. Dominant antigenic peptides located at the heavy chain terminal of botulinum neurotoxin B contain receptor-binding sites for synaptotagmin II. Biochem Biophys Res Commun. 2008;374:331-5 pubmed publisher
    ..Both were derived from the uninterrupted segments of the amino acid residues H(1241-1277) of BoNTb. Kinetic data of the antigen-receptor interaction were depicted in real-time and calculated as affinity constant of 2.99x10(-7)M. ..
  25. Lu Y, Chen W, Wang E, Han L, Zhang X, Chen W, et al. Mesorhizobium shangrilense sp. nov., isolated from root nodules of Caragana species. Int J Syst Evol Microbiol. 2009;59:3012-8 pubmed publisher
  26. Hu Z, Qin Z, Wang M, Xu C, Feng G, Liu J, et al. The Arabidopsis SMO2, a homologue of yeast TRM112, modulates progression of cell division during organ growth. Plant J. 2010;61:600-10 pubmed publisher
    ..Taken together we postulate that Arabidopsis SMO2 is a conserved yeast TRM112 homologue and SMO2-mediated cellular events are required for proper progression of cell division in plant growth and development. ..
  27. Jin Y, Xie Z, Lu G, Yang S, Shen K. Characterization of variants in the promoter of BZLF1 gene of EBV in nonmalignant EBV-associated diseases in Chinese children. Virol J. 2010;7:92 pubmed publisher
  28. Gui W, Qu Q, Chen Y, Wang M, Zhang X, Bi L, et al. Crystal structure of YdaL, a stand-alone small MutS-related protein from Escherichia coli. J Struct Biol. 2011;174:282-9 pubmed publisher
    ..We also discovered that the DNA binding affinity and endonuclease activity of the truncated YdaL??-??? protein were slightly lower than those of full-length YdaL?-???, suggesting that residues 1-38 may be involved in DNA binding. ..
  29. Zhang Z, Chi H, Niu C, B gwald J, Dalmo R. Molecular cloning and characterization of Foxp3 in Atlantic salmon (Salmo salar). Fish Shellfish Immunol. 2011;30:902-9 pubmed publisher
    ..Taken together, these results suggest the presence of a Foxp3 gene in Atlantic salmon that may be an important transcription factor in immune regulation, and further research may reveal the existence of Treg-like T cells in this species...
  30. Liu H, Zhou X, Dong N, Liu X, Zhang H, Zhang Z. Expression of a wheat MYB gene in transgenic tobacco enhances resistance to Ralstonia solanacearum, and to drought and salt stresses. Funct Integr Genomics. 2011;11:431-43 pubmed publisher
    ..The results suggested that the wheat R2R3-MYB transcription factor plays an important role in modulating responses to biotic and abiotic stresses. ..
  31. Jia H, Chai Y, Li C, Lu D, Luo J, Qin L, et al. Abscisic acid plays an important role in the regulation of strawberry fruit ripening. Plant Physiol. 2011;157:188-99 pubmed publisher
    ..These data provide evidence that ABA is a signal molecule that promotes strawberry ripening and that the putative ABA receptor, FaCHLH/ABAR, is a positive regulator of ripening in response to ABA...
  32. Yang F, Zhang T, Hu Y, Wang X, Du J, Li Y, et al. Survey of enterovirus infections from hand, foot and mouth disease outbreak in China, 2009. Virol J. 2011;8:508 pubmed publisher
    ..Our study deserves the attention on HFMD control and vaccine development. ..
  33. Tang Y, Liu M, Gao S, Zhang Z, Zhao X, Zhao C, et al. Molecular characterization of novel TaNAC genes in wheat and overexpression of TaNAC2a confers drought tolerance in tobacco. Physiol Plant. 2012;144:210-24 pubmed publisher
  34. Wang Y, Yu B, Zhao J, Guo J, Li Y, Han S, et al. Autophagy contributes to leaf starch degradation. Plant Cell. 2013;25:1383-99 pubmed publisher
    ..These data suggest that autophagy contributes to transitory starch degradation by sequestering SSGLs to the vacuole for their subsequent breakdown...
  35. Liang X, Zhang H, Zhou A, Wang H. AngRem104, an angiotensin II-induced novel upregulated gene in human mesangial cells, is potentially involved in the regulation of fibronectin expression. J Am Soc Nephrol. 2003;14:1443-51 pubmed
    ..It is concluded that AngRem104 is a novel human gene potentially involved in the regulation of FN induced by AngII in human MC. These findings may provide new insights into mechanisms of glomerular sclerosis associated with AngII. ..
  36. Hwang J, Gu Y, Lee Y, Yang Z. Oscillatory ROP GTPase activation leads the oscillatory polarized growth of pollen tubes. Mol Biol Cell. 2005;16:5385-99 pubmed
  37. Sun C, Zhou M, Li Y, Xiang H. Molecular characterization of the minimal replicon and the unidirectional theta replication of pSCM201 in extremely halophilic archaea. J Bacteriol. 2006;188:8136-44 pubmed publisher
    ..To our knowledge, this is the first unidirectional theta replication plasmid experimentally identified in the domain of archaea. It provides a novel plasmid system to conduct research on archaeal DNA replication...
  38. Cheng W, Chen J, Xu Z, Yu J, Huang C, Jin M, et al. Phylogenetic and recombination analysis of human bocavirus 2. BMC Infect Dis. 2011;11:50 pubmed publisher
    ..Current evidence in this study was not enough to support recombination between HBoV2 strains, and HBoV3 may be a recombinant between HBoV and the common ancestor of HBoV2 and HBoV4. ..
  39. Zhang G, Deng A, Xu Q, Liang Y, Chen N, Wen T. Complete genome sequence of Bacillus amyloliquefaciens TA208, a strain for industrial production of guanosine and ribavirin. J Bacteriol. 2011;193:3142-3 pubmed publisher
    ..Comparison of its genome sequence with those of strains DSM7 and FZB42 revealed horizontal gene transfer represented by unique prophages and restriction-modification systems and indicated significant accumulation of guanosine. ..
  40. Pu H, Li J, Li D, Han C, Yu J. Identification of an internal RNA element essential for replication and translational enhancement of tobacco necrosis virus A(C). PLoS ONE. 2013;8:e57938 pubmed publisher
  41. Xu Y, Wang Z, Xue Y, Zhou P, Ma Y, Ventosa A, et al. Natrialba hulunbeirensis sp. nov. and Natrialba chahannaoensis sp. nov., novel haloalkaliphilic archaea from soda lakes in Inner Mongolia Autonomous Region, China. Int J Syst Evol Microbiol. 2001;51:1693-8 pubmed
    ..The names Natrialba hulunbeirensis sp. nov. (type strain X21T = AS 1.1986T = JCM 10989T) and Natrialba chahannaoensis sp. nov. (type strain C112T = AS 1.1977T = JCM 10990T) are proposed...
  42. Song X, Yang C, Liu J, Yang W. RPA, a class II ARFGAP protein, activates ARF1 and U5 and plays a role in root hair development in Arabidopsis. Plant Physiol. 2006;141:966-76 pubmed
    ..Together, we demonstrated that RPA plays a role in root hair and pollen tube growth, most likely through the regulation of Arabidopsis ARF1 and ARF1-like protein U5 activity. ..
  43. Xue Y, Zhang X, Zhou C, Zhao Y, Cowan D, Heaphy S, et al. Caldalkalibacillus thermarum gen. nov., sp. nov., a novel alkalithermophilic bacterium from a hot spring in China. Int J Syst Evol Microbiol. 2006;56:1217-21 pubmed
    ..nov., sp. nov. is proposed. The type strain of Caldalkalibacillus thermarum is strain HA6(T) (=CGMCC 1.4242(T)=JCM 13486(T))...
  44. Chen T, Li Q, Xu J, Ding K, Wang Y, Wang W, et al. Mutation screening of BMP4, BMP7, HOXA4 and HOXB6 genes in Chinese patients with hypospadias. Eur J Hum Genet. 2007;15:23-8 pubmed
    ..Further functional studies are required to make the associations clear between these variants and hypospadias. ..
  45. Zhang J, Liu T, Fu J, Zhu Y, Jia J, Zheng J, et al. Construction and application of EST library from Setaria italica in response to dehydration stress. Genomics. 2007;90:121-31 pubmed
    ..Moreover, protein degradation pathway may also play a pivotal role in drought-tolerant responses of foxtail millet. Finally, Northern blot analysis validated well the cDNA microarray data...
  46. Tian J, Wu N, Guo X, Guo J, Zhang J, Fan Y. Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines. BMC Bioinformatics. 2007;8:450 pubmed
    ..The performance of Parepro indicates that it is a powerful tool for predicting the effect of nsSNPs on protein function and would be useful for large-scale analysis of genomic nsSNP data. ..
  47. Li Y, Zhang L, Wang D, Zhou H, Ouyang H, Ming J, et al. Deletion of the msdS/AfmsdC gene induces abnormal polarity and septation in Aspergillus fumigatus. Microbiology. 2008;154:1960-72 pubmed publisher
    ..Although the mechanism by which the N-glycan processing affects polarity and septation is unclear, our results show that msdS is involved in polarity and septation in A. fumigatus. ..
  48. Guo X, You X, Liu L, Zhang J, Liu S, Jiang C. Alicyclobacillus aeris sp. nov., a novel ferrous- and sulfur-oxidizing bacterium isolated from a copper mine. Int J Syst Evol Microbiol. 2009;59:2415-20 pubmed publisher
    ..nov. is proposed; the type strain is ZJ-6(T) (=CGMCC 1.7072(T)=NBRC 104953(T)). ..
  49. Zhang J, Li Y, Guo L, Cao R, Zhao P, Jiang W, et al. DH166, a beta-carboline derivative, inhibits the kinase activity of PLK1. Cancer Biol Ther. 2009;8:2374-83 pubmed
  50. Zheng L, Yuan X, Xie Z, Jin Y, Gao H, Song J, et al. Human bocavirus infection in young children with acute respiratory tract infection in Lanzhou, China. J Med Virol. 2010;82:282-8 pubmed publisher
    ..There was no apparent association between the viral load of HBoV and coinfection or disease severity. The NP-1 gene was highly conserved in HBoV. ..
  51. Xue F, Sun Y, Yan L, Zhao C, Chen J, Bartlam M, et al. The crystal structure of porcine reproductive and respiratory syndrome virus nonstructural protein Nsp1beta reveals a novel metal-dependent nuclease. J Virol. 2010;84:6461-71 pubmed publisher
    ..Combined with the reported nuclear localization of this protein, these results shed light on the self-processing mode and precise biological function of nsp1beta and thus offer a multitarget template for future drug discovery. ..
  52. Zhang Y, Cheng M, Zhang Y, Zhong X, Dai H, Yan L, et al. A switch from hBrm to Brg1 at IFN?-activated sequences mediates the activation of human genes. Cell Res. 2010;20:1345-60 pubmed publisher
    ..Our data are consistent with the hypothesis that the hBrm/Brg1 switch is an indicator of the responsiveness of a gene to heat-shock or IFN? stimulation and may represent an "on-off switch" of gene expression in vivo. ..
  53. Zheng X, Guo J, Xu L, Li H, Zhang D, Zhang K, et al. Crystal structure of a novel esterase Rv0045c from Mycobacterium tuberculosis. PLoS ONE. 2011;6:e20506 pubmed publisher
    ..The structure provides insight into the hydrolysis mechanism of the C-O ester bond, and will be helpful in understanding the ester/lipid metabolism in M. tuberculosis. ..
  54. Li X, Zhuo J, Jing Y, Liu X, Wang X. Expression of a GALACTINOL SYNTHASE gene is positively associated with desiccation tolerance of Brassica napus seeds during development. J Plant Physiol. 2011;168:1761-70 pubmed publisher
    ..The physiological implications of BnGOLS-1 expression patterns in developing seeds are discussed in light of the hypothesized role of RFOs in seed desiccation tolerance. ..
  55. Hu H, Hu Y, Pan Y, Liang H, Wang H, Wang X, et al. Novel plasmid and its variant harboring both a bla(NDM-1) gene and type IV secretion system in clinical isolates of Acinetobacter lwoffii. Antimicrob Agents Chemother. 2012;56:1698-702 pubmed publisher
    ..Sequence alignment indicated that this bla(NDM-1)-containing composite transposon, which can also be captured by other mobile elements, was probably a product of multiple recombination events and can move as a whole by transposition. ..
  56. Gao C, Pan M, Lei Y, Tian L, Jiang H, Li X, et al. A point mutation in the DNA-binding domain of HPV-2 E2 protein increases its DNA-binding capacity and reverses its transcriptional regulatory activity on the viral early promoter. BMC Mol Biol. 2012;13:5 pubmed publisher
    ..These results suggest that the mutation from Ala to Val at aa 338 is critical for E2 DNA-binding and its transcriptional regulation. ..
  57. Zhu S, Gong C, Song D, Gao S, Zheng G. Discovery of a novel (+)-?-lactamase from Bradyrhizobium japonicum USDA 6 by rational genome mining. Appl Environ Microbiol. 2012;78:7492-5 pubmed
    ..It consists of 409 amino acids, only 49% of which are identical to the amino acid sequences of the known (+)-?-lactamase from Sulfolobus solfataricus. This is only the third (+)-?-lactamase gene to be reported...
  58. Wang Y, Zhu G, Harhangi H, Zhu B, Jetten M, Yin C, et al. Co-occurrence and distribution of nitrite-dependent anaerobic ammonium and methane-oxidizing bacteria in a paddy soil. FEMS Microbiol Lett. 2012;336:79-88 pubmed publisher
    ..Our results showed that anammox and n-damo bacteria co-occurred in the paddy soil. Both of them were abundant in deep layers (30-60 cm) and the community structures changed along depths in the soil core. ..
  59. Zhang Y, Lin K. A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation. BMC Evol Biol. 2012;12:174 pubmed publisher
    ..Such phylogenomic studies that compare collinear regions of whole genomes will help to better understand the evolution and adaptation of closely related microbes and E. coli in particular. ..
  60. Gao N, Jiang W, Gao H, Cheng Z, Qian H, Si S, et al. Structural basis of human transcription factor Sry-related box 17 binding to DNA. Protein Pept Lett. 2013;20:481-8 pubmed
  61. Fang X, Su J, Wang H, Wei Y, Zhang T, Zhao L, et al. Williamsia sterculiae sp. nov., isolated from a Chinese medicinal plant. Int J Syst Evol Microbiol. 2013;63:4158-62 pubmed publisher
    ..The name Williamsia sterculiae sp. nov. is proposed, with strain CPCC 203464(T) (?=?DSM 45741(T)?=?KCTC 29118(T)) as the type strain. ..
  62. Sun J, Peng X, Fan W, Tang M, Liu J, Shen S. Functional analysis of BpDREB2 gene involved in salt and drought response from a woody plant Broussonetia papyrifera. Gene. 2014;535:140-9 pubmed publisher
  63. Javid B, Sorrentino F, Toosky M, Zheng W, Pinkham J, Jain N, et al. Mycobacterial mistranslation is necessary and sufficient for rifampicin phenotypic resistance. Proc Natl Acad Sci U S A. 2014;111:1132-7 pubmed publisher
    ..These phenotypic changes are reflected in differential susceptibility of RNA polymerase to the drug. We propose that altering translational fidelity represents a unique form of environmental adaptation. ..
  64. Tian Y, Breedveld G, Huang S, Oostra B, Heutink P, Lo W. Characterization of ZNF333, a novel double KRAB domain containing zinc finger gene on human chromosome 19p13.1. Biochim Biophys Acta. 2002;1577:121-5 pubmed
    ..ZNF333 further contains 10 C2H2 zinc finger motifs at the C-terminus. ..
  65. Liu H, Zhou P, Yokota A, Sugiyanma J. [Characterization and phylogenetic analysis of the new species of the Leucobacter tropicalis sp. nov]. Wei Sheng Wu Xue Bao. 1999;39:396-401 pubmed
    ..komagae. A new species name, Leucobacter tropicalis sp. nov. was proposed for this isolate. The type strain is designated F-8...
  66. Liu L, Wei Z, Wang Y, Wan M, Cheng Z, Gong W. Crystal structure of human coactosin-like protein. J Mol Biol. 2004;344:317-23 pubmed
    ..These two sites are quite close, which might prevent F-actin and 5-Lipoxygenase from binding to coactosin simultaneously. ..
  67. Sun F, Huo X, Zhai Y, Wang A, Xu J, Su D, et al. Crystal structure of mitochondrial respiratory membrane protein complex II. Cell. 2005;121:1043-57 pubmed
    ..The Complex II structure provides a bona fide model for study of the mitochondrial respiratory system and human mitochondrial diseases related to mutations in this complex. ..
  68. Li W, Shi Z, Yu M, Ren W, Smith C, Epstein J, et al. Bats are natural reservoirs of SARS-like coronaviruses. Science. 2005;310:676-9 pubmed
    ..The human and civet isolates of SARS-CoV nestle phylogenetically within the spectrum of SL-CoVs, indicating that the virus responsible for the SARS outbreak was a member of this coronavirus group...
  69. Bai X, Chen X, Feng Z, Hou K, Zhang P, Fu B, et al. Identification of basolateral membrane targeting signal of human sodium-dependent dicarboxylate transporter 3. J Cell Physiol. 2006;206:821-30 pubmed
  70. Ge C, Cui X, Wang Y, Hu Y, Fu Z, Zhang D, et al. BUD2, encoding an S-adenosylmethionine decarboxylase, is required for Arabidopsis growth and development. Cell Res. 2006;16:446-56 pubmed
    ..Our results suggest that polyamines are required for the normal growth and development of higher plants. ..
  71. Cao S, Lou Z, Tan M, Chen Y, Liu Y, Zhang Z, et al. Structural basis for the recognition of blood group trisaccharides by norovirus. J Virol. 2007;81:5949-57 pubmed
    ..The extensive interface between the two protomers in a P dimer also plays a crucial role in the formation of the receptor binding interface. ..
  72. Li H, Mao T, Zhang Z, Yuan M. The AtMAP65-1 cross-bridge between microtubules is formed by one dimer. Plant Cell Physiol. 2007;48:866-74 pubmed
  73. Qiao Z, Huang B, Liu J. Molecular cloning and functional analysis of an ERF gene from cotton (Gossypium hirsutum). Biochim Biophys Acta. 2008;1779:122-7 pubmed
    ..These results suggested that GhERF1 might be functionally important in acclimation of cotton to stress. ..
  74. Zhao Y, Liu Y, Zheng D. Alpha 1-antichymotrypsin/SerpinA3 is a novel target of orphan nuclear receptor Nur77. FEBS J. 2008;275:1025-38 pubmed publisher
    ..These data may throw light on the function of Nur77 in inflammatory responses and acute-phase reactions as well as the development of Alzheimer's disease. ..
  75. Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, et al. Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci U S A. 2008;105:7564-9 pubmed publisher
  76. Ruan M, Zhao Y, Meng Z, Wang X, Yang W. Conserved miRNA analysis in Gossypium hirsutum through small RNA sequencing. Genomics. 2009;94:263-8 pubmed publisher
    ..Multiple encoding loci of some miRNAs were identified by comparing the cloned miRNA and miR sequences. ..
  77. Cui A, Xu W, Li X. [Analysis on genetic character of coxsackievirus A16 strains isolated in Shanghai in 2002]. Zhongguo Yi Miao He Mian Yi. 2009;15:135-40 pubmed
    ..To reveal the genetic characteristic of Coxsackie virus A16 (CVA16) strains isolated during an epidemic of Hand-Foot-Mouth Disease (HFMD) in Shanghai in 2002...
  78. Cong H, Sun L, Liu C, Tien P. Inhibition of atrogin-1/MAFbx expression by adenovirus-delivered small hairpin RNAs attenuates muscle atrophy in fasting mice. Hum Gene Ther. 2011;22:313-24 pubmed publisher
    ..Taken together, the present study showed that MAFbx could be a potential molecular target for treating muscle atrophy...
  79. Pan Y, Wang L, He X, Tian Y, Liu G, Tan H. SabR enhances nikkomycin production via regulating the transcriptional level of sanG, a pathway-specific regulatory gene in Streptomyces ansochromogenes. BMC Microbiol. 2011;11:164 pubmed publisher
    ..These results indicated that SabR modulated nikkomycin biosynthesis as an enhancer via interaction with the promoter region of sanG, and expanded our understanding about regulatory cascade in nikkomycin biosynthesis. ..
  80. Qin G, Wang Y, Cao B, Wang W, Tian S. Unraveling the regulatory network of the MADS box transcription factor RIN in fruit ripening. Plant J. 2012;70:243-55 pubmed publisher
    ..Taken together, our findings suggest that the regulatory effect of RIN on fruit ripening is achieved by targeting specific molecular pathways. ..
  81. Li H, Liu H, Shi A, Stys P, Zhou X, Cai W. The complete mitochondrial genome and novel gene arrangement of the unique-headed bug Stenopirates sp. (Hemiptera: Enicocephalidae). PLoS ONE. 2012;7:e29419 pubmed publisher
    ..A microsatellite was identified in the putative control region. Finally, phylogenetic reconstruction suggests that Enicocephalomorpha is the sister group to all the remaining Heteroptera. ..
  82. Sun Z, Zhang H, Yuan X, Wang Y, Feng D, Wang Y, et al. Luteimonas cucumeris sp. nov., isolated a from cucumber leaf. Int J Syst Evol Microbiol. 2012;62:2916-20 pubmed publisher
    ..9 mol%. Based on the evidence above, strain Y4(T) represents a novel species of the genus Luteimonas, for which the name Luteimonas cucumeris sp. nov. is proposed. The type strain is Y4(T) (?= CGMCC 1.10821(T) = KCTC 23627(T))...
  83. Zhu S, Gao B, Harvey P, Craik D. Dermatophytic defensin with antiinfective potential. Proc Natl Acad Sci U S A. 2012;109:8495-500 pubmed publisher
    ..Our work represents a valuable approach to explore novel peptide antibiotics from a large resource of fungal genomes. ..
  84. Zhao F, Chaloner G, Darby A, Song X, Li D, Birtles R, et al. Optimization of Bartonella henselae multilocus sequence typing scheme using single-nucleotide polymorphism analysis of SOLiD sequence data. Chin Med J (Engl). 2012;125:2284-8 pubmed
    ..Exploitation of high-throughput sequencing data allows a more informed selection of MLST loci and thus, potentially, a means of enhancing the sensitivity of the schemes they comprise...
  85. Yao S, Ni J, Chen Q, Borthwick A. Enrichment and characterization of a bacteria consortium capable of heterotrophic nitrification and aerobic denitrification at low temperature. Bioresour Technol. 2013;127:151-7 pubmed publisher
    ..It is likely that Pseudomonas spp. played a major role in nitrification and denitrification, while R. ferrireducens and its relatives utilized nitrate as both electron acceptor and nitrogen source. ..
  86. Zhao J, Li H, Winterton S, Liu Z. Ancestral gene organization in the mitochondrial genome of Thyridosmylus langii (McLachlan, 1870) (Neuroptera: Osmylidae) and implications for lacewing evolution. PLoS ONE. 2013;8:e62943 pubmed publisher
    ..The monophyly of Neuroptera and the more basal position of Osmylidae were also recovered by different datasets and phylogenetic methods. ..
  87. Sun W, Zhu Y, Wang Z, Zhong Q, Gao F, Lou J, et al. Crystal structure of the yeast TSC1 core domain and implications for tuberous sclerosis pathological mutations. Nat Commun. 2013;4:2135 pubmed publisher
    ..This indicates that the disruption of the TSC1-NTD globular structure is a major cause of tuberous sclerosis...
  88. Wang Q, Yang J, Tang K, Luo L, Wang L, Tian L, et al. Pharmacological characteristics and efficacy of a novel anti-angiogenic antibody FD006 in corneal neovascularization. BMC Biotechnol. 2014;14:17 pubmed publisher
    ..The pharmacological characteristics of FD006 were similar or even a little better than bevacizumab in inhibiting corneal neovascularization. ..
  89. Yang J, Zhang X, Feng J, Leng H, Li S, Xiao J, et al. The Histone Chaperone FACT Contributes to DNA Replication-Coupled Nucleosome Assembly. Cell Rep. 2016;14:1128-1141 pubmed publisher
    ..Therefore, FACT collaborates with CAF-1 and Rtt106 in RC nucleosome assembly. ..
  90. Cui L, Ferreri K, Hugli T. Structural characterization of the C4a anaphylatoxin from rat. Mol Immunol. 1988;25:663-71 pubmed
    ..Both human and bovine C4a are polypeptides free of carbohydrate while rat and presumably mouse C4a are glycoproteins. The complete primary structure of rat C4a anaphylatoxin has been elucidated as follows: (formula; see text) ..
  91. Wei X, Wang X, Hong D. Marked intragenomic heterogeneity and geographical differentiation of nrDNA ITS in Larix potaninii (Pinaceae). J Mol Evol. 2003;57:623-35 pubmed
    ..In addition, some varieties of L. potaninii might have experienced an nrDNA founder effect parallel to their geographical isolation...
  92. Zhang H, Xie X, Xu Y, Wu N. Isolation and functional assessment of a tomato proteinase inhibitor II gene. Plant Physiol Biochem. 2004;42:437-44 pubmed
    ..As demonstrated experimentally, TPI-2 could be expressed effectively in tobacco cells and the protein products showed insecticidal activity. ..