YBX3

Summary

Gene Symbol: YBX3
Description: Y-box binding protein 3
Alias: CSDA, CSDA1, DBPA, ZONAB, Y-box-binding protein 3, DNA-binding protein A, ZO-1-associated nucleic acid-binding protein, cold shock domain-containing protein A, cold-shock domain containing A1, cold-shock domain protein A, single-strand DNA-binding protein NF-GMB
Species: human
Products:     YBX3

Top Publications

  1. Sourisseau T, Georgiadis A, Tsapara A, Ali R, Pestell R, Matter K, et al. Regulation of PCNA and cyclin D1 expression and epithelial morphogenesis by the ZO-1-regulated transcription factor ZONAB/DbpA. Mol Cell Biol. 2006;26:2387-98 pubmed
    ..G1/S-phase transition by cytoplasmic sequestration of a complex formed by CDK4 and the transcription factor ZONAB. Canine ZONAB is the homologue of human DbpA, an E2F target gene that is overexpressed in different carcinomas...
  2. Kudo S, Mattei M, Fukuda M. Characterization of the gene for dbpA, a family member of the nucleic-acid-binding proteins containing a cold-shock domain. Eur J Biochem. 1995;231:72-82 pubmed
    Human DNA-binding proteins, dbpA and dbpB (YB-1), are members of a protein family containing a cold-shock domain, and are regarded as transcriptional regulators...
  3. Yasen M, Obulhasim G, Kajino K, Mogushi K, Mizushima H, Tanaka S, et al. DNA binding protein A expression and methylation status in hepatocellular carcinoma and the adjacent tissue. Int J Oncol. 2012;40:789-97 pubmed publisher
    We investigated the expression and promoter methylation of dbpA in human hepatocellular carcinoma (HCC) and examined their correlation with clinicopathological features...
  4. Nie M, Balda M, Matter K. Stress- and Rho-activated ZO-1-associated nucleic acid binding protein binding to p21 mRNA mediates stabilization, translation, and cell survival. Proc Natl Acad Sci U S A. 2012;109:10897-902 pubmed publisher
    ..ZO-1-associated nucleic acid binding protein (ZONAB)/DbpA is a Y-box transcription factor that is regulated by components of intercellular junctions that are affected ..
  5. Sakura H, Maekawa T, Imamoto F, Yasuda K, Ishii S. Two human genes isolated by a novel method encode DNA-binding proteins containing a common region of homology. Gene. 1988;73:499-507 pubmed
    ..Two kinds of clones, named dbpA and dbpB, showed high affinities for the DNA probes...
  6. Lima W, Parreira K, Devuyst O, Caplanusi A, N kuli F, Marien B, et al. ZONAB promotes proliferation and represses differentiation of proximal tubule epithelial cells. J Am Soc Nephrol. 2010;21:478-88 pubmed publisher
    ..The transcription factor zonula occludens 1 (ZO-1)-associated nucleic acid binding protein (ZONAB) can shuttle between tight junctions and nuclei, promoting cell proliferation and expression of cyclin D1 and ..
  7. Wang G, Zheng Y, Che X, Wang X, Zhao J, Wu K, et al. Upregulation of human DNA binding protein A (dbpA) in gastric cancer cells. Acta Pharmacol Sin. 2009;30:1436-42 pubmed publisher
    To determine the effect of human DNA binding protein (dbpA) on the biology of gastric cancer cells. DbpA expression was analyzed by Western blot analysis and immunofluorescence staining in gastric cancer tissues and cell lines...
  8. Hayashi J, Kajino K, Umeda T, Takano S, Arakawa Y, Kudo M, et al. Somatic mutation and SNP in the promoter of dbpA and human hepatocarcinogenesis. Int J Oncol. 2002;21:847-50 pubmed
    Human DNA-binding protein (dbpA) is a member of a Y-box binding protein family containing a cold shock domain. The increased expression of Y box binding proteins in somatic cells is associated with cell proliferation and transformation...
  9. Arakawa Y, Kajino K, Kano S, Tobita H, Hayashi J, Yasen M, et al. Transcription of dbpA, a Y box binding protein, is positively regulated by E2F1: implications in hepatocarcinogenesis. Biochem Biophys Res Commun. 2004;322:297-302 pubmed
    Human hepatocellular carcinoma is one of the most common cancers in the world. We previously showed that dbpA, a member of the Y box family of proteins, could accelerate the process of inflammation-induced hepatocarcinogenesis, and that ..

More Information

Publications76

  1. Kim S, PARK S. Structural changes during cysteine desulfurase CsdA and sulfur acceptor CsdE interactions provide insight into the trans-persulfuration. J Biol Chem. 2013;288:27172-80 pubmed publisher
    In Escherichia coli, three cysteine desulfurases (IscS, SufS, and CsdA) initiate the delivery of sulfur for various biological processes such as the biogenesis of Fe-S clusters...
  2. Hardin J, Hu Y, McKay D. Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif. J Mol Biol. 2010;402:412-27 pubmed publisher
    DEAD-box RNA helicases of the bacterial DbpA subfamily are localized to their biological substrate when a carboxy-terminal RNA recognition motif domain binds tightly and specifically to a segment of 23S ribosomal RNA (rRNA) that includes ..
  3. El Toni A, Khan A, Ibrahim M, Al Hoshan M, Labis J. Fabrication of mesoporous silica shells on solid silica spheres using anionic surfactants and their potential application in controlling drug release. Molecules. 2012;17:13199-210 pubmed publisher
    ..A co-structure directing agent (CSDA) has assisted the electrostatic interaction between negatively charged silica particles and the negatively charged ..
  4. Coipan C, van Duijvendijk G, Hofmeester T, Takumi K, Sprong H. The genetic diversity of Borrelia afzelii is not maintained by the diversity of the rodent hosts. Parasit Vectors. 2018;11:454 pubmed publisher
    ..afzelii at three distinct genetic loci. We chose two plasmid loci, dbpA and ospC, and a chromosomal one, IGS. While the larvae that fed on shrews (Sorex sp.) tested negative for B...
  5. Smith T, Helm S, Chen Y, Lin Y, Rajasekhar Karna S, Seshu J. Borrelia Host Adaptation Protein (BadP) Is Required for the Colonization of a Mammalian Host by the Agent of Lyme Disease. Infect Immun. 2018;86: pubmed publisher
    ..burgdorferi to the mammalian host, such as OspC, DbpA, and BBK32. Both RpoS and BosR, key regulators of gene expression in B...
  6. Zimmermann B, Baranović G, Gembarovski D. Experimental and theoretical study of the cation binding properties of macrocyclic dehydrodibenzopyrido[15]annulenes. Spectrochim Acta A Mol Biomol Spectrosc. 2015;137:730-9 pubmed publisher
    The UV/Vis titration measurements, vibrational and NMR spectroscopy of isomeric dehydrodibenzopyrido[15]annulenes (DBPA) 1 and 2 clearly show that under proper conditions these macrocycles can achieve fast, quantitative and unselective ..
  7. Zhang W, Urban A, Mihara H, Leimkuhler S, Kurihara T, Esaki N. IscS functions as a primary sulfur-donating enzyme by interacting specifically with MoeB and MoaD in the biosynthesis of molybdopterin in Escherichia coli. J Biol Chem. 2010;285:2302-8 pubmed publisher
    ..It has been shown that three cysteine desulfurases (CsdA, SufS, and IscS) of Escherichia coli can transfer sulfur from l-cysteine to the thiocarboxylate of MoaD in vitro...
  8. Pan W, Wang L, Zhang X, Zhang H, Zhang J, Wang G, et al. Hypoxia-induced microRNA-191 contributes to hepatic ischemia/reperfusion injury through the ZONAB/Cyclin D1 axis. Cell Death Differ. 2019;26:291-305 pubmed publisher
    ..upon induction by hypoxia or ischemia, miR-191 suppresses expression of ZO-1-associated Y-box factor (ZONAB) and its downstream factor Cyclin D1, consequently resulting in cell death and tissue injury...
  9. Morgan A, Wang X. Structural mechanisms underlying sequence-dependent variations in GAG affinities of decorin binding protein A, a Borrelia burgdorferi adhesin. Biochem J. 2015;467:439-51 pubmed publisher
    Decorin-binding protein A (DBPA) is an important surface adhesin of the bacterium Borrelia burgdorferi, the causative agent of Lyme disease...
  10. Dixon D, Choi J, El Ghazali A, Park S, Roos K, Jordan M, et al. Loss of muscleblind-like 1 results in cardiac pathology and persistence of embryonic splice isoforms. Sci Rep. 2015;5:9042 pubmed publisher
    ..Atp2a1, Atp11a, Cacna1s, Ryr2, intra and inter cellular transport, Clta, Stx2, Tjp1, cell survival, Capn3, Sirt2, Csda, sarcomere and cytoskeleton organization and function, Trim55, Mapt, Pdlim3, Pdlim5, Sorbs1, Sorbs2, Fhod1, Spag9 ..
  11. Arnaboldi P, Sambir M, Dattwyler R. Decorin binding proteins A and B in the serodiagnosis of Lyme disease in North America. Clin Vaccine Immunol. 2014;21:1426-36 pubmed publisher
    ..study, we mapped the linear epitopes of the prominently expressed Borrelia adhesins decorin binding protein A (DbpA) and DbpB...
  12. Ricke S, Dawoud T, Kim S, Park S, Kwon Y. Salmonella Cold Stress Response: Mechanisms and Occurrence in Foods. Adv Appl Microbiol. 2018;104:1-38 pubmed publisher
    ..modification, transcriptional and translational responses, cold-induced protein synthesis including CspA, CsdA, NusA, DnaA, RecA, RbfA, PNPase, KsgA, SrmB, trigger factors, and initiation factors are discussed...
  13. Hong S, Kwon Y, Martin R, Des Soye B, de Paz A, Swonger K, et al. Improving cell-free protein synthesis through genome engineering of Escherichia coli lacking release factor 1. Chembiochem. 2015;16:844-53 pubmed publisher
    ..We targeted five potential negative effectors to be disabled: the nuclease genes rna, rnb, csdA, mazF, and endA. Using our most productive extract from strain MCJ...
  14. Lin Y, Chen Y, Smith T, Karna S, Seshu J. Short-Chain Fatty Acids Alter Metabolic and Virulence Attributes of Borrelia burgdorferi. Infect Immun. 2018;86: pubmed publisher
    ..Immunoblot analysis revealed elevated levels of RpoS, OspC, and DbpA with increased levels of SCFAs...
  15. Carmona Antoñanzas G, Santi M, Migaud H, Vera L. Light- and clock-control of genes involved in detoxification. Chronobiol Int. 2017;34:1026-1041 pubmed publisher
    ..Under LD, tefb, dbpa and dbpb expression peaked at the end of the darkness period whereas tefa showed peak levels of expression at the ..
  16. López Estepa M, Ardá A, Savko M, Round A, Shepard W, Bruix M, et al. The crystal structure and small-angle X-ray analysis of CsdL/TcdA reveal a new tRNA binding motif in the MoeB/E1 superfamily. PLoS ONE. 2015;10:e0118606 pubmed publisher
    ..Furthermore, we show by nuclear magnetic resonance that CsdL/TcdA engages in transient interactions with CsdA and CsdE, which, in the latter case, involve catalytically important residues...
  17. Salo J, Jaatinen A, Söderström M, Viljanen M, Hytönen J. Decorin binding proteins of Borrelia burgdorferi promote arthritis development and joint specific post-treatment DNA persistence in mice. PLoS ONE. 2015;10:e0121512 pubmed publisher
    Decorin binding proteins A and B (DbpA and B) of Borrelia burgdorferi are of critical importance for the virulence of the spirochete...
  18. Georgiadis A, Tschernutter M, Bainbridge J, Balaggan K, Mowat F, West E, et al. The tight junction associated signalling proteins ZO-1 and ZONAB regulate retinal pigment epithelium homeostasis in mice. PLoS ONE. 2010;5:e15730 pubmed publisher
    ..regulates cell proliferation and gene expression by inhibiting the activity of the Y-box transcription factor ZONAB in cultured epithelial cells...
  19. Su C, Chen C, Ho W, Hu F, Lee S, Wang I. Phenotypes of trypsin- and collagenase-prepared bovine corneal endothelial cells in the presence of a selective Rho kinase inhibitor, Y-27632. Mol Vis. 2015;21:633-43 pubmed
    ..Western blot analysis evaluated F-actin, zonule occludin, and ZO-1 associated nucleic acid binding protein (ZONAB) and RhoA expression. Rho A pulldown assay evaluated Rho A activity...
  20. Söderholm H, Derman Y, Lindström M, Korkeala H. Functional csdA is needed for effective adaptation and initiation of growth of Clostridium botulinum ATCC 3502 at suboptimal temperature. Int J Food Microbiol. 2015;208:51-7 pubmed publisher
    The activity of RNA helicase csdA (cbo2802) after temperature downshift was compared to its activity at optimal growth temperature, and the effect of sense and antisense oriented insertional inactivation of cbo2802 on the growth of ATCC ..
  21. Brousmiche S, Souris K, de Xivry J, Lee J, Macq B, Seco J. Combined influence of CT random noise and HU-RSP calibration curve nonlinearities on proton range systematic errors. Phys Med Biol. 2017;62:8226-8245 pubmed publisher
    ..The statistics of the RSP and the range continuous slowing down approximation (CSDA) have been analytically derived for the general case of a calibration curve obtained by the stoichiometric ..
  22. Morgan A, Sepuru K, Feng W, Rajarathnam K, Wang X. Flexible Linker Modulates Glycosaminoglycan Affinity of Decorin Binding Protein A. Biochemistry. 2015;54:5113-9 pubmed publisher
    Decorin binding protein A (DBPA) is a glycosaminoglycan (GAG)-binding adhesin found on the surface of the bacterium Borrelia burgdorferi (B. burgdorferi), the causative agent of Lyme disease...
  23. Salo J, Pietikäinen A, Söderström M, Auvinen K, Salmi M, Ebady R, et al. Flow-Tolerant Adhesion of a Bacterial Pathogen to Human Endothelial Cells Through Interaction With Biglycan. J Infect Dis. 2016;213:1623-31 pubmed publisher
    ..The adhesion was mediated by the decorin-binding protein A (DbpA) and DbpB surface molecules of B. garinii...
  24. Tamiya S, Kaplan H. Role of epithelial-mesenchymal transition in proliferative vitreoretinopathy. Exp Eye Res. 2016;142:26-31 pubmed publisher
    ..pathways such as β-catenin/Wnt and Hippo signaling, as well as transcription factors involving Zeb1, Snail, and ZONAB. Upon EMT, RPE cells can further differentiate into myofibroblasts in the presence of TGF-β with cytoskeletal ..
  25. Obulhasim G, Yasen M, Kajino K, Mogushi K, Tanaka S, Mizushima H, et al. Up-regulation of dbpA mRNA in hepatocellular carcinoma associated with metabolic syndrome. Hepatol Int. 2013;7:215-25 pubmed publisher
    ..Also, the aim was to investigate the cold shock protein: DNA-binding protein A (dbpA) expression in HCC patients with MS...
  26. Del Campo M, Mohr S, Jiang Y, Jia H, Jankowsky E, Lambowitz A. Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones. J Mol Biol. 2009;389:674-93 pubmed publisher
    ..coli DEAD-box protein DbpA and the vaccinia virus DExH-box protein NPH-II gave little, if any, group I or group II intron splicing stimulation ..
  27. Melkina O, Koval V, Ivanov A, Zhuze A, Zavilgelsky G. DNA sequence-specific dimeric bisbenzimidazoles DBP(n) and DBPA(n) as inhibitors of H-NS silencing in bacterial cells. Microbiol Res. 2018;207:75-82 pubmed publisher
    DNA sequence-specific fluorescent dimeric bisbenzimidazoles DBP(n) and DBPA(n), noncovalently interacting with A-T pairs in the minor groove of double-stranded DNA were used for studying and monitoring the expression of histone-like H-NS-..
  28. Feng W, Wang X. Structure of decorin binding protein B from Borrelia burgdorferi and its interactions with glycosaminoglycans. Biochim Biophys Acta. 2015;1854:1823-1832 pubmed publisher
    Decorin-binding proteins (DBPs), DBPA and DBPB, are surface lipoproteins on Borrelia burgdorferi, the causative agent of Lyme disease...
  29. Embers M, Hasenkampf N, Barnes M, Didier E, Philipp M, Tardo A. Five-Antigen Fluorescent Bead-Based Assay for Diagnosis of Lyme Disease. Clin Vaccine Immunol. 2016;23:294-303 pubmed publisher
    ..The five B. burgdorferi antigens, consisting of OspC, OspA, DbpA, OppA2, and the C6 peptide, were combined into a fluorescent cytometric bead-based assay for the detection of B...
  30. Esteve Gassent M, Smith T, Small C, Thomas D, Seshu J. Absence of sodA Increases the Levels of Oxidation of Key Metabolic Determinants of Borrelia burgdorferi. PLoS ONE. 2015;10:e0136707 pubmed publisher
    ..Immunoblot analysis revealed reduced levels of Outer surface protein C (OspC), Decorin binding protein A (DbpA), fibronectin binding protein (BBK32), RpoS and BosR in the sodA mutant compared to the control strains...
  31. Kenne A, Kim S, PARK S. The crystal structure of Escherichia coli CsdE. Int J Biol Macromol. 2016;87:317-21 pubmed publisher
    ..b>CsdA which is one of the three cysteine desulfurases identified in Escherichia coli transfers sulfur to the non Fe-S ..
  32. Jahfari S, Krawczyk A, Coipan E, Fonville M, Hovius J, Sprong H, et al. Enzootic origins for clinical manifestations of Lyme borreliosis. Infect Genet Evol. 2017;49:48-54 pubmed publisher
    ..Spirochetes from ticks feeding on birds were overrepresented in genotypes of the plasmid and regulatory genes dbpA, rpoN and rpoS from spirochetes in neuroborreliosis patients...
  33. De Angelis L, Balasubramanian S, Berghella L. Akt-mediated phosphorylation controls the activity of the Y-box protein MSY3 in skeletal muscle. Skelet Muscle. 2015;5:18 pubmed publisher
    The Y-box protein MSY3/Csda represses myogenin transcription in skeletal muscle by binding a highly conserved cis-acting DNA element located just upstream of the myogenin minimal promoter (myogHCE)...
  34. Boulay P, Mitchell L, Turpin J, Huot Marchand J, Lavoie C, Sanguin Gendreau V, et al. Rab11-FIP1C Is a Critical Negative Regulator in ErbB2-Mediated Mammary Tumor Progression. Cancer Res. 2016;76:2662-74 pubmed publisher
    ..these FIP1C-proficient and -deficient tumor models revealed that FIP1C regulated E-cadherin (CDH1) trafficking and ZONAB (YBX3) function in Cdk4-mediated cell-cycle progression...
  35. Manikas R, Thomson E, Thoms M, Hurt E. The K⁺-dependent GTPase Nug1 is implicated in the association of the helicase Dbp10 to the immature peptidyl transferase centre during ribosome maturation. Nucleic Acids Res. 2016;44:1800-12 pubmed publisher
    ..The binding sites of Dbp10 are the same as those identified for the prokaryotic helicase DbpA bound to the 50S subunit...
  36. Liu L, Liu X, Ma J, Liu Y, Li Z, Ma T, et al. Bradykinin increased the permeability of BTB via NOS/NO/ZONAB-mediating down-regulation of claudin-5 and occludin. Biochem Biophys Res Commun. 2015;464:118-25 pubmed publisher
    ..possible mechanism is unclear, we demonstrated that BK could increase the expressions of eNOS and nNOS and promote ZONAB translocation into nucleus...
  37. Festa B, Chen Z, Berquez M, Debaix H, Tokonami N, Prange J, et al. Impaired autophagy bridges lysosomal storage disease and epithelial dysfunction in the kidney. Nat Commun. 2018;9:161 pubmed publisher
    ..phosphorylation of tight junction ZO-1 and triggers a signaling cascade involving ZO-1-associated Y-box factor ZONAB, which leads to cell proliferation and transport defects...
  38. He L, Zhou Z, Shao Y, Yang Z, Zhou S, Zou X, et al. Bradykinin potentially stimulates cell proliferation in rabbit corneal endothelial cells through the ZO?1/ZONAB pathway. Int J Mol Med. 2018;42:71-80 pubmed publisher
    ..and assess the involvement of the zonula occludens?1(ZO?1)/ZO?1associated nucleic acid binding protein (ZONAB) pathway. Cell proliferation and cell cycle distribution was analyzed following treatment with BK (0.01, 0.1,1...
  39. Koo H, Hakim J, Fisher P, Grueneberg A, Andersen D, Bej A. Distribution of cold adaptation proteins in microbial mats in Lake Joyce, Antarctica: Analysis of metagenomic data by using two bioinformatics tools. J Microbiol Methods. 2016;120:23-8 pubmed publisher
    ..Overall, the abundance of cold-shock DEAD-box protein A (CSDA), antifreeze proteins (AFPs), fatty acid desaturase (FAD), trehalose synthase (TS), and cold-shock family of ..
  40. Wang G, Durussel J, Shurlock J, Mooses M, Fuku N, Bruinvels G, et al. Validation of whole-blood transcriptome signature during microdose recombinant human erythropoietin (rHuEpo) administration. BMC Genomics. 2017;18:817 pubmed publisher
    ..of the adaptive model, 15 genes showed a high sensitivity (? 93%) and specificity (? 71%), with BCL2L1 and CSDA having the highest sensitivity (93%) and specificity (93%)...
  41. Na H, Lee J. Molecular Basis of Alcohol-Related Gastric and Colon Cancer. Int J Mol Sci. 2017;18: pubmed publisher
    ..phospholipids and disrupts organization of tight junctions, leading to nuclear translocation of β-catenin and ZONAB, which may contributes to regulation of genes involved in proliferation, invasion and metastasis...
  42. Sharpe Elles L, Sykes M, Williamson J, Uhlenbeck O. A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit. Nucleic Acids Res. 2009;37:6503-14 pubmed publisher
    Escherichia coli DbpA is an ATP-dependent RNA helicase with specificity for hairpin 92 of 23S ribosomal RNA, an important part of the peptidyl transferase center...
  43. Argyrokastritis A, Kontaraki J, Kamakari S, Pasparaki A, Moschonas N. Assignment of a human cold shock domain protein A intronless pseudogene (CSDAP1) to human chromosome 16 band p11.2 by in situ hybridization. Cytogenet Cell Genet. 1999;84:53-4 pubmed
  44. Moorthamer M, Zumstein Mecker S, Chaudhuri B. DNA binding protein dbpA binds Cdk5 and inhibits its activity. FEBS Lett. 1999;446:343-50 pubmed
    ..We have determined that a C-terminal 172 amino acid domain of the DNA binding protein, dbpA, binds to Cdk5...
  45. Zhu C, Sauter E, Schreiter A, van Roeyen C, Ostendorf T, Floege J, et al. Cold Shock Proteins Mediate GN with Mesangioproliferation. J Am Soc Nephrol. 2016;27:3678-3689 pubmed
    b>DNA binding protein A (DbpA) is a member of the human cold shock domain-containing protein superfamily, with known functions in cell proliferation, differentiation, and stress responses...
  46. Frankel P, Aronheim A, Kavanagh E, Balda M, Matter K, Bunney T, et al. RalA interacts with ZONAB in a cell density-dependent manner and regulates its transcriptional activity. EMBO J. 2005;24:54-62 pubmed
    ..and found that RalA interacts with a Y-box transcription factor, ZO-1-associated nucleic acid-binding protein (ZONAB), in a GTP-dependent manner...
  47. Buchert M, Darido C, Lagerqvist E, Sedello A, Cazevieille C, Buchholz F, et al. The symplekin/ZONAB complex inhibits intestinal cell differentiation by the repression of AML1/Runx1. Gastroenterology. 2009;137:156-64, 164.e1-3 pubmed publisher
    ..The association between symplekin and the Y-box transcription factor ZONAB activates proliferation in intestinal and kidney cells...
  48. Coles L, Lambrusco L, Burrows J, Hunter J, Diamond P, Bert A, et al. Phosphorylation of cold shock domain/Y-box proteins by ERK2 and GSK3beta and repression of the human VEGF promoter. FEBS Lett. 2005;579:5372-8 pubmed
    ..We found that the cold shock domain (Y-box) repressor proteins, dbpA and dbpB/YB-1, bind distinct strands of the human VEGF HRR...
  49. Bradshaw G, Thueson R, Uriona T. Improved Serodiagnostic Performance for Lyme Disease by Use of Two Recombinant Proteins in Enzyme-Linked Immunosorbent Assay Compared to Standardized Two-Tier Testing. J Clin Microbiol. 2017;55:3046-3056 pubmed publisher
    ..These two proteins were generated from (i) the full-length dbpA gene combined with the invariable region 6 of the vlsE gene (DbpA/C6) and (b) the full-length ospC..
  50. Uehara R, Nozawa R, Tomioka A, Petry S, Vale R, Obuse C, et al. The augmin complex plays a critical role in spindle microtubule generation for mitotic progression and cytokinesis in human cells. Proc Natl Acad Sci U S A. 2009;106:6998-7003 pubmed publisher
    ..These results demonstrate that MT generation mediated by augmin and gamma-TuRC is critical for chromosome segregation and cytokinesis in human cells. ..
  51. Xu L, Wang L, Peng J, Li F, Wu L, Zhang B, et al. Insights into the Structure of Dimeric RNA Helicase CsdA and Indispensable Role of Its C-Terminal Regions. Structure. 2017;25:1795-1808.e5 pubmed publisher
    b>CsdA has been proposed to be essential for the biogenesis of ribosome and gene regulation after cold shock. However, the structure of CsdA and the function of its long C-terminal regions are still unclear...
  52. Spadaro D, Le S, Laroche T, Méan I, Jond L, Yan J, et al. Tension-Dependent Stretching Activates ZO-1 to Control the Junctional Localization of Its Interactors. Curr Biol. 2017;27:3783-3795.e8 pubmed publisher
    ..We also show that ZO-1 and ZO-2 regulate the localization of the transcription factor DbpA and the tight junction membrane protein occludin in a manner that depends on the organization of the actin ..
  53. López de Victoria A, Moore A, Gittis A, Koculi E. Kinetics and Thermodynamics of DbpA Protein's C-Terminal Domain Interaction with RNA. ACS Omega. 2017;2:8033-8038 pubmed publisher
    b>DbpA is an Escherichia coli DEAD-box RNA helicase implicated in RNA structural isomerization in the peptide bond formation site...
  54. Liu R, Wang G, Liu C, Qiu J, Yan L, Li X, et al. Gene expression profile analysis of dbpA knockdown in colorectal cancer cells. Cell Biol Int. 2016;40:1280-1293 pubmed publisher
    DNA-binding protein A (dbpA) has been reported associated with the pathogenesis and development of various cancers...
  55. Dupasquier S, Delmarcelle A, Marbaix E, Cosyns J, Courtoy P, Pierreux C. Validation of housekeeping gene and impact on normalized gene expression in clear cell renal cell carcinoma: critical reassessment of YBX3/ZONAB/CSDA expression. BMC Mol Biol. 2014;15:9 pubmed publisher
    YBX3/ZONAB/CSDA is an epithelial-specific transcription factor acting in the density-based switch between proliferation and differentiation...
  56. Bernstein H, Lindquist J, Keilhoff G, Dobrowolny H, Brandt S, Steiner J, et al. Differential distribution of Y-box-binding protein 1 and cold shock domain protein A in developing and adult human brain. Brain Struct Funct. 2015;220:2235-45 pubmed publisher
    The two cold shock domain containing proteins, Y-box-binding protein-1 and cold shock domain protein A were immunolocalized in developing and adult human brain...
  57. Chiang D, Lebesgue N, Beavers D, Alsina K, Damen J, Voigt N, et al. Alterations in the interactome of serine/threonine protein phosphatase type-1 in atrial fibrillation patients. J Am Coll Cardiol. 2015;65:163-73 pubmed publisher
    ..Increases in binding were found between PP1c and PPP1R7, cold-shock domain protein A (CSDA), and phosphodiesterase type-5A (PDE5A) in PAF patients, with CSDA and PDE5A being novel interactors validated by ..
  58. Funke B, Zuleger B, Benavente R, Schuster T, Goller M, Stevenin J, et al. The mouse poly(C)-binding protein exists in multiple isoforms and interacts with several RNA-binding proteins. Nucleic Acids Res. 1996;24:3821-8 pubmed
    ..The interaction between mCBP and splicing factor 9G8 was confirmed in vivo. These results suggest a function of mCBP in RNA metabolism. ..
  59. Coles L, Bartley M, Bert A, Hunter J, Polyak S, Diamond P, et al. A multi-protein complex containing cold shock domain (Y-box) and polypyrimidine tract binding proteins forms on the vascular endothelial growth factor mRNA. Potential role in mRNA stabilization. Eur J Biochem. 2004;271:648-60 pubmed
    ..Finally, as the VEGF gene is also regulated at the transcriptional level by CSD proteins, we propose a combined transcriptional/post-transcriptional role for these proteins in VEGF and other growth factor gene regulation. ..
  60. Coles L, Diamond P, Occhiodoro F, Vadas M, Shannon M. Cold shock domain proteins repress transcription from the GM-CSF promoter. Nucleic Acids Res. 1996;24:2311-7 pubmed
    ..is identical to the previously reported CSD protein dbpB and the other is a previously unreported variant of the dbpA CSD factor. This is the first report of CSD factors binding to a cytokine gene...
  61. Lloberas J, Soler C, Celada A. Repression mechanisms of the I-A beta gene of the major histocompatibility complex. Immunobiology. 1997;198:249-63 pubmed
    ..The dbpA protein represses the expression of I-A beta by a quenching mechanism, forming a complex with NF-YA and the dbpB ..
  62. Oliver P, Thomson R. Cavity theory applications for kilovoltage cellular dosimetry. Phys Med Biol. 2017;62:4440-4459 pubmed publisher
    ..Formula: see text], where L is the mean chord length of the cavity and ? is given by [Formula: see text] (R CSDA is the continuous slowing down approximation range of an electron of energy equal to that of incident photons)..
  63. Liu R, Wang G, Liu C, Qiu J, Yan L, Li X, et al. RNAi-mediated downregulation of DNA binding protein A inhibits tumorigenesis in colorectal cancer. Int J Mol Med. 2016;38:703-12 pubmed publisher
    DNA binding protein A (dbpA) belongs to the Y-box binding protein family and has been reported to play an important role in carcinogenesis...
  64. Saito Y, Nakagami H, Azuma N, Hirata S, Sanada F, Taniyama Y, et al. Critical roles of cold shock domain protein A as an endogenous angiogenesis inhibitor in skeletal muscle. Antioxid Redox Signal. 2011;15:2109-20 pubmed publisher
    ..Our objectives were to investigate the effect of cold shock domain protein A (CSDA) as an endogenous angiogenesis inhibitor and to develop a novel strategy of therapeutic ..
  65. Weinmann A, Yan P, Oberley M, Huang T, Farnham P. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev. 2002;16:235-44 pubmed
    ..We suggest that human CpG microarrays, in combination with chromatin immunoprecipitation, will allow rapid identification of target promoters for many mammalian transcription factors. ..
  66. Peña Soler E, Aranda J, López Estepa M, Gomez S, Garces F, Coll M, et al. Insights into the inhibited form of the redox-sensitive SufE-like sulfur acceptor CsdE. PLoS ONE. 2017;12:e0186286 pubmed publisher
    ..The recent elucidation of the mechanistic basis for transpersulfuration in the CsdA-CsdE model system has paved the way for a better understanding of its role under oxidative stress...
  67. Hesemann P, Nguyen T, Hankari S. Precursor Mediated Synthesis of Nanostructured Silicas: From Precursor-Surfactant Ion Pairs to Structured Materials. Materials (Basel). 2014;7:2978-3001 pubmed publisher
    ..This method is based on the use of anionic surfactants together with a co-structure-directing agent (CSDA), mostly a silylated ammonium precursor...