TDRD7

Summary

Gene Symbol: TDRD7
Description: tudor domain containing 7
Alias: CATC4, PCTAIRE2BP, TRAP, tudor domain-containing protein 7, PCTAIRE2-binding protein, tudor repeat associator with PCTAIRE 2
Species: human
Products:     TDRD7

Top Publications

  1. Lachke S, Alkuraya F, Kneeland S, Ohn T, Aboukhalil A, Howell G, et al. Mutations in the RNA granule component TDRD7 cause cataract and glaucoma. Science. 2011;331:1571-6 pubmed publisher
    ..We describe two human cases of pediatric cataract with loss-of-function mutations in TDRD7 and demonstrate that Tdrd7 nullizygosity in mouse causes cataracts, as well as glaucoma and an arrest in ..
  2. Kurpińska A, Suraj J, Bonar E, Zakrzewska A, Stojak M, Sternak M, et al. Proteomic characterization of early lung response to breast cancer metastasis in mice. Exp Mol Pathol. 2019;107:129-140 pubmed publisher
    ..were identified using nano-liquid chromatography coupled to a high-resolution mass spectrometry (nanoLC/hybrid ion trap- Orbitrap XL Discovery)...
  3. Beserra A, Vilegas W, Tangerina M, Ascencio S, Soares I, Pavan E, et al. Chemical characterisation and toxicity assessment in vitro and in vivo of the hydroethanolic extract of Terminalia argentea Mart. leaves. J Ethnopharmacol. 2018;227:56-68 pubmed publisher
    ..HPLC) and mass spectrometry through direct flow infusion coupled with electrospray ionization and ion-trap analyzer (DFI-ESI-IT-MS analyses) The contents of phenols, flavonoids and phytosterols were analysed by ..
  4. Seo B, Ryu H, Park Y, Huh J, Baek Y. Dual effect of WIN-34B on osteogenesis and osteoclastogenesis in cytokine-induced mesenchymal stem cells and bone marrow cells. J Ethnopharmacol. 2016;193:227-236 pubmed publisher
    ..To investigate osteoclast differentiation, tartrate-resistant acid phosphatase (TRAP) staining was conducted after treatment with WIN-34B...
  5. Kandouli C, Cassien M, Mercier A, Delehedde C, Ricquebourg E, Stocker P, et al. Antidiabetic, antioxidant and anti inflammatory properties of water and n-butanol soluble extracts from Saharian Anvillea radiata in high-fat-diet fed mice. J Ethnopharmacol. 2017;207:251-267 pubmed publisher
    ..and hydroxyl radical (by electron paramagnetic resonance spin-trapping) scavenging, antioxidant (DPPH, TRAP and ORAC assays), xanthine oxidase, metal chelating, ?-amylase and ?-glucosidase inhibitory property, and ..
  6. Nadesalingam A, Chen J, Farahvash A, Khan M. Hypertonic Saline Suppresses NADPH Oxidase-Dependent Neutrophil Extracellular Trap Formation and Promotes Apoptosis. Front Immunol. 2018;9:359 pubmed publisher
    ..Excess neutrophil extracellular trap (NET) formation, or NETosis, is associated with many pathological conditions including chronic inflammation...
  7. Chen X, Li X, Zhai X, Zhi X, Cao L, Qin L, et al. Shikimic Acid Inhibits Osteoclastogenesis in Vivo and in Vitro by Blocking RANK/TRAF6 Association and Suppressing NF-κB and MAPK Signaling Pathways. Cell Physiol Biochem. 2018;51:2858-2871 pubmed publisher
    ..First, the in vitro MTT cell viability assay was performed. Tartrate-resistant acid phosphatase (TRAP) and actin ring formation assays, as well as immunofluorescence staining were then performed to evaluate ..
  8. Muller S, Radic M. Citrullinated Autoantigens: From Diagnostic Markers to Pathogenetic Mechanisms. Clin Rev Allergy Immunol. 2015;49:232-9 pubmed publisher
    ..The externalized chromatin is called a neutrophil extracellular "trap" (NET)...
  9. Xiao J, Vemula S, Xue Y, Khan M, Kuruvilla K, Marquez Lona E, et al. Motor phenotypes and molecular networks associated with germline deficiency of Ciz1. Exp Neurol. 2016;283:110-20 pubmed publisher
    ..Overall, neural expression of Ciz1 increased with postnatal age. A Ciz1 gene-trap knock-out (KO) mouse model (Ciz1(-/-)) was generated to examine the functional role(s) of CIZ1 in the sensorimotor ..

More Information

Publications99

  1. Zuo C, Zhang Y, Wang J, Han L, Peng C, Peng D. Deciphering the intervention mechanism of Taohong Siwu Decoction following the abnormal uterine bleeding rats based on serum metabolic profiles. J Pharm Biomed Anal. 2019;170:204-214 pubmed publisher
    ..this study, serum metabolic profile data was collected using ultra high-performance liquid chromatography with ion trap/time-of-flight mass spectrometry and gas chromatography-mass spectrometry...
  2. Huo X, Liu J, Yu Z, Wang Y, Wang C, Tian X, et al. Alisma orientale extract exerts the reversing cholestasis effect by activation of farnesoid X receptor. Phytomedicine. 2018;42:34-42 pubmed publisher
    ..Proteomics was analyzed by liquid chromatography tandem ion-trap mass spectrometry...
  3. Li M, Chen X, Yan J, Zhou L, Wang Y, He F, et al. Inhibition of osteoclastogenesis by stem cell-derived extracellular matrix through modulation of intracellular reactive oxygen species. Acta Biomater. 2018;71:118-131 pubmed publisher
    ..osteoclast differentiation, evidenced by down-regulation of multinucleated tartrate-resistant acid phosphatase (TRAP)-positive cells, areas of actin rings, and osteoclast-specific gene expression...
  4. Mirza F, Lorenzo J, Drissi H, Lee F, Soung D. Dried plum alleviates symptoms of inflammatory arthritis in TNF transgenic mice. J Nutr Biochem. 2017;52:54-61 pubmed publisher
    ..This was associated with fewer tartrate-resistant acid phosphatase (TRAP) positive cells, suggesting decreased osteoclastogenesis...
  5. Tang Y, Yue Z, Xin D, Zeng L, Xiong Z, Hu Z, et al. ??Ecdysterone promotes autophagy and inhibits apoptosis in osteoporotic rats. Mol Med Rep. 2017;: pubmed publisher
    ..Serum concentration of calcium and phosphorus, and the activity of tartrate?resistant acid phosphatase (TRAP) and alkaline phosphatase (ALP) were measured by biochemical assay...
  6. Valentijn A, Saretzki G, Tempest N, Critchley H, Hapangama D. Human endometrial epithelial telomerase is important for epithelial proliferation and glandular formation with potential implications in endometriosis. Hum Reprod. 2015;30:2816-28 pubmed publisher
    ..TA was measured by telomere repeat amplification protocol (TRAP) assay; TL by qPCR, and Q-FISH; cell proliferation was assessed by immunoblotting of histone H3 and 3D-culture to ..
  7. Choe J, Kim S. Melittin inhibits osteoclast formation through the downregulation of the RANKL-RANK signaling pathway and the inhibition of interleukin-1? in murine macrophages. Int J Mol Med. 2017;39:539-548 pubmed publisher
    ..analyses for osteoclast-like multinucleated cells (MNCs) were performed by tartrate-resistant acid phosphatase (TRAP) staining, F-actin staining and pit formation methods...
  8. Alfredsson M, Olafsson E, Eydal M, Unnsteinsdóttir E, Hansford K, Wint W, et al. Surveillance of Ixodes ricinus ticks (Acari: Ixodidae) in Iceland. Parasit Vectors. 2017;10:466 pubmed publisher
    ..Longworth mammal traps were used to trap Apodemus sylvaticus in southwestern and southern Iceland...
  9. Carestia A, Kaufman T, Rivadeneyra L, Landoni V, Pozner R, Negrotto S, et al. Mediators and molecular pathways involved in the regulation of neutrophil extracellular trap formation mediated by activated platelets. J Leukoc Biol. 2016;99:153-62 pubmed publisher
    ..to gain further insight into the stimuli, mediators, molecular pathways, and regulation of neutrophil extracellular trap formation mediated by human platelets...
  10. Zhou Y, Yang Y, Liu Y, Chang H, Liu K, Zhang X, et al. Irp2 Knockout Causes Osteoporosis by Inhibition of Bone Remodeling. Calcif Tissue Int. 2019;104:70-78 pubmed publisher
    ..decreased, while markers for bone resorption including cathepsin K (Ctsk) and tartrate-resistant acid phosphatase (Trap) were all significantly increased...
  11. Sun X, Brieño Enríquez M, Cornelius A, Modzelewski A, Maley T, Campbell Peterson K, et al. FancJ (Brip1) loss-of-function allele results in spermatogonial cell depletion during embryogenesis and altered processing of crossover sites during meiotic prophase I in mice. Chromosoma. 2016;125:237-52 pubmed publisher
    ..In the present study, we investigated the role of Fancj during prophase I using a gene trap mutant allele...
  12. Kamiya N, Yamaguchi R, Aruwajoye O, Kim A, Kuroyanagi G, Phipps M, et al. Targeted Disruption of NF1 in Osteocytes Increases FGF23 and Osteoid With Osteomalacia-like Bone Phenotype. J Bone Miner Res. 2017;32:1716-1726 pubmed publisher
    ..Dynamic bone histomorphometry revealed reduced bone formation rate and mineral apposition rate in the cKO mice. TRAP staining showed a reduced osteoclast number...
  13. Yung L, Nikolic I, Paskin Flerlage S, Pearsall R, Kumar R, Yu P. A Selective Transforming Growth Factor-? Ligand Trap Attenuates Pulmonary Hypertension. Am J Respir Crit Care Med. 2016;194:1140-1151 pubmed
    ..domain expressed as an immunoglobulin-Fc fusion protein (TGFBRII-Fc), serving as a selective TGF-?1/3 ligand trap, in several experimental PH models. Signaling studies used cultured human pulmonary artery smooth muscle cells...
  14. Lorenzo M, Dudzik D, Varas E, Gibellini M, Skotnicki M, Zórawski M, et al. Optimization and validation of a chiral GC-MS method for the determination of free D-amino acids ratio in human urine: application to a gestational diabetes mellitus study. J Pharm Biomed Anal. 2015;107:480-7 pubmed publisher
    ..Detection was performed with an ion trap mass analyzer, operating in the full scan mode in the m/z 50-350 range...
  15. Manrique E, Castillo L, Lazala O, Guerrero C, Acosta O. Bone resorptive activity of human peripheral blood mononuclear cells after fusion with polyethylene glycol. J Bone Miner Metab. 2017;35:127-141 pubmed publisher
    ..PEG-fused PBMCs showed TRAP+-multinucleated cells and bone resorption activity, and were also positive for osteoclast markers such ..
  16. Perez D, Munoz M, Molina J, Muñoz Caro T, Silva L, Taubert A, et al. Eimeria ninakohlyakimovae induces NADPH oxidase-dependent monocyte extracellular trap formation and upregulates IL-12 and TNF-?, IL-6 and CCL2 gene transcription. Vet Parasitol. 2016;227:143-50 pubmed publisher
    Extracellular trap (ET) formation has been demonstrated as novel effector mechanism against diverse pathogens in polymorphonuclear neutrophils (PMN), eosinophils, mast cells, macrophages and recently also in monocytes...
  17. Bose P, Verstovsek S. Developmental Therapeutics in Myeloproliferative Neoplasms. Clin Lymphoma Myeloma Leuk. 2017;17S:S43-S52 pubmed publisher
    ..First-in-class agents such as the activin receptor IIA ligand trap sotatercept (for anemia of MF), the telomerase inhibitor imetelstat, and the antifibrotic agent PRM-151 (..
  18. Kloos B, Chakraborty S, Lindner S, Noack K, Harre U, Schett G, et al. Pasteurella multocida toxin- induced osteoclastogenesis requires mTOR activation. Cell Commun Signal. 2015;13:40 pubmed publisher
    ..PMT induces the differentiation of RAW264.7 macrophages into multinucleated, tartrate resistant acid phosphatase (TRAP) positive osteoclasts that are capable to resorb bone...
  19. Liu D, Li T, Luo H, Zuo X, Liu S, Wu S. The effect of the cholinergic anti-inflammatory pathway on collagen-induced arthritis involves the modulation of dendritic cell differentiation. Arthritis Res Ther. 2018;20:263 pubmed publisher
    ..The degree of arthritis was measured by using the arthritis score, hematoxylin and eosin staining, and TRAP (tartrate-resistant acid phosphatase) staining...
  20. Haas M, Onstead Haas L, Lee T, Torfah M, Mooradian A. Angiotensin II receptor one (AT1) mediates dextrose induced endoplasmic reticulum stress and superoxide production in human coronary artery endothelial cells. Int J Cardiol. 2016;220:842-50 pubmed publisher
    ..The ER stress was measured using the placental alkaline phosphatase (ES-TRAP) assay and western blot analysis of glucose regulated protein 78 (GRP78), c-jun-N-terminal kinase 1 (JNK1), phospho-..
  21. Sikulu M, Monkman J, Dave K, Hastie M, Dale P, Kitching R, et al. Proteomic changes occurring in the malaria mosquitoes Anopheles gambiae and Anopheles stephensi during aging. J Proteomics. 2015;126:234-44 pubmed publisher
    ..tandem time-of-flight mass spectrometry or capillary high-pressure liquid chromatography coupled with a linear ion-trap (LTQ)-Orbitrap XL hybrid mass spectrometer...
  22. Yu H, Herbert B, Valerio M, Yarborough L, Hsu L, Argraves K. FTY720 inhibited proinflammatory cytokine release and osteoclastogenesis induced by Aggregatibacter actinomycetemcomitans. Lipids Health Dis. 2015;14:66 pubmed publisher
    ..Osteoclasts were stained by tartrate-resistant acid phosphatase (TRAP) staining...
  23. Gao Y, Zhang J, Liu Y, Zhang S, Wang Y, Liu B, et al. Regulation of TERRA on telomeric and mitochondrial functions in IPF pathogenesis. BMC Pulm Med. 2017;17:163 pubmed publisher
    ..Telomerase activity was observed using a fluorescent quantitative TRAP assay kit...
  24. Song J, Jing Z, Hu W, Yu J, Cui X. ?-Linolenic Acid Inhibits Receptor Activator of NF-?B Ligand Induced (RANKL-Induced) Osteoclastogenesis and Prevents Inflammatory Bone Loss via Downregulation of Nuclear Factor-KappaB-Inducible Nitric Oxide Synthases (NF-?B-iNOS) Signaling Pathways. Med Sci Monit. 2017;23:5056-5069 pubmed
    ..suppressed the RANKL-induced osteoclast markers c-Fos, c-Jun and NFATc1 together with transcription factor proteins TRAP, OSCAR, cathepsin K and ?3-integrin...
  25. Lei T, Liang Z, Li F, Tang C, Xie K, Wang P, et al. Pulsed electromagnetic fields (PEMF) attenuate changes in vertebral bone mass, architecture and strength in ovariectomized mice. Bone. 2018;108:10-19 pubmed publisher
    ..Besides, serum bone resorption markers including tartrate-resistant acid phosphatase 5b (TRAP-5b) and C-terminal crosslinked telopeptides of type I collagen (CTX-I) were markedly lower in OVX+PEMF group ..
  26. Van Bergen T, Hu T, Etienne I, Reyns G, Moons L, Feyen J. Neutralization of placental growth factor as a novel treatment option in diabetic retinopathy. Exp Eye Res. 2017;165:136-150 pubmed publisher
    ..of the anti-PlGF antibody was compared to anti-VEGFR-2 antibody (DC101), anti-VEGF antibody (B20), VEGF-Trap (aflibercept) and triamcinolone acetonide (TAAC)...
  27. Thummuri D, Jeengar M, Shrivastava S, Nemani H, Ramavat R, Chaudhari P, et al. Thymoquinone prevents RANKL-induced osteoclastogenesis activation and osteolysis in an in vivo model of inflammation by suppressing NF-KB and MAPK Signalling. Pharmacol Res. 2015;99:63-73 pubmed publisher
    ..TQ inhibited the RANKL induced phosphorylation of MAPKs and mRNA expression of osteoclastic specific genes such as TRAP, DC-STAMP, NFATc1 and c-Fos...
  28. Cao X, Chen X, Liu Y, Xu Z, Li L, Zhou Y, et al. An iNTT system for the large-scale screening of differentially expressed, nuclear-targeted proteins: cold-treatment-induced nucleoproteins in Rye (Secale cereale L.). BMC Genomics. 2016;17:189 pubmed publisher
    ..We developed an integrative Nuclear Transportation Trap (iNTT) system that includes an improved nuclear transportation trap and utilizes the "after suppression subtraction"..
  29. Ma F, Guo X, Fan H. Extracellular Nucleases of Streptococcus equi subsp. zooepidemicus Degrade Neutrophil Extracellular Traps and Impair Macrophage Activity of the Host. Appl Environ Microbiol. 2017;83: pubmed publisher
    ..mechanism called neutrophil extracellular traps (NETs), which primarily consist of DNA and granule proteins that trap bacteria via charge interactions...
  30. Bischoff A, Oertel P, Sukul P, Rimmbach C, David R, Schubert J, et al. Smell of cells: Volatile profiling of stem- and non-stem cell proliferation. J Breath Res. 2017;: pubmed publisher
    ..VOCs from headspace were preconcentrated by means of needle trap micro-extraction and analysed by gas chromatography-mass spectrometry (GC-MS)...
  31. Jackson Holmes E, McDevitt T, Lu H. A microfluidic trap array for longitudinal monitoring and multi-modal phenotypic analysis of individual stem cell aggregates. Lab Chip. 2017;17:3634-3642 pubmed publisher
  32. Mäkelä N, Stenroos M, Sarvas J, Ilmoniemi R. Truncated RAP-MUSIC (TRAP-MUSIC) for MEG and EEG source localization. Neuroimage. 2018;167:73-83 pubmed publisher
    ..We introduce a new MUSIC method, called truncated recursively-applied-and-projected MUSIC (TRAP-MUSIC)...
  33. Xu L, Xu J, Zhong K, Shang Z, Wang F, Wang R, et al. Analysis of Non-Volatile Chemical Constituents of Menthae Haplocalycis Herba by Ultra-High Performance Liquid Chromatography-High Resolution Mass Spectrometry. Molecules. 2017;22: pubmed publisher
    ..in Menthae Haplocalycis herba using ultra-high performance liquid chromatography coupled with linear ion trap-Orbitrap mass spectrometry (UHPLC-LTQ-Orbitrap)...
  34. Chaharborj S, Moameni A. Applications of the fractional calculus to study the physical theory of ion motion in a quadrupole ion trap. Eur J Mass Spectrom (Chichester). 2017;23:254-271 pubmed publisher
    ..calculus has been applied to study the motion of ions in a three-dimensional radio frequency quadrupole ion trap; we have called this arrangement a fractional quadrupole ion trap...
  35. Rutsdottir G, I Rasmussen M, Hojrup P, Bernfur K, Emanuelsson C, Söderberg C. Chaperone-client interactions between Hsp21 and client proteins monitored in solution by small angle X-ray scattering and captured by crosslinking mass spectrometry. Proteins. 2017;: pubmed publisher
    ..We propose that the flexible and hydrophobic N-terminal arms of Hsp21 can trap and refold early-unfolding intermediates with or without dodecamer dissociation.
  36. Dryden M, Canfield M, Niedfeldt E, Kinnon A, Kalosy K, Smith A, et al. Evaluation of sarolaner and spinosad oral treatments to eliminate fleas, reduce dermatologic lesions and minimize pruritus in naturally infested dogs in west Central Florida, USA. Parasit Vectors. 2017;10:389 pubmed publisher
    ..8% reductions in flea trap counts in the sarolaner and spinosad treatment groups, respectively...
  37. Burn S, Washkowitz A, Gavrilov S, Papaioannou V. Postimplantation Mga expression and embryonic lethality of two gene-trap alleles. Gene Expr Patterns. 2018;27:31-35 pubmed publisher
    ..is necessary for the survival of the pluripotent epiblast cells of the peri-implantation embryo and a null, gene-trap allele MgaGt results in embryonic lethality shortly after implantation...
  38. Kameche F, Six A, Charra F, Ngo A, Mathevet F, Salzemann C, et al. Directed Organization of Platinum Nanocrystals through Organic Supramolecular Nanoporous Templates. Langmuir. 2017;33:12759-12765 pubmed publisher
    We propose a novel approach to trap 2 nm Pt nanocrystals using nanoporous two-dimensional supramolecular networks for cavity-confined host-guest recognition process...
  39. Jin Y, Stohn J, Wang Q, Nagano K, Baron R, Bouxsein M, et al. Inhibition of osteoclast differentiation and collagen antibody-induced arthritis by CTHRC1. Bone. 2017;97:153-167 pubmed publisher
    ..and increased osteoclast activity together with enhanced expression of osteoclastogenic genes such as c-Fos, Rankl, Trap, and Nfatc1...
  40. Le Goff G, Damiens D, Ruttee A, Payet L, Lebon C, Dehecq J, et al. Comparison of Efficiency of BG-Sentinel Traps Baited with Mice, Mouse-Litter, and CO? Lures for Field Sampling of Male and Female Aedes albopictus Mosquitoes. Insects. 2017;8: pubmed publisher
    ..albopictus males and females were tested using a Latin square design. The BG-Sentinel trap baited with CO? + ML caught a significantly larger number of mosquitoes compared to traps baited with mice only...
  41. Giannoukos S, Agapiou A, Taylor S. Advances in chemical sensing technologies for VOCs in breath for security/threat assessment, illicit drug detection, and human trafficking activity. J Breath Res. 2018;12:027106 pubmed publisher
    ..g. non-scanning digital light processing linear ion trap MS (DLP-LIT-MS), nanoparticles, mid-infrared photo-acoustic spectroscopy and hyphenated technologies)...
  42. Salinas Muñoz M, Garrido Flores M, Baeza M, Huamán Chipana P, Garcia Sesnich J, Bologna R, et al. Bone resorptive activity in symptomatic and asymptomatic apical lesions of endodontic origin. Clin Oral Investig. 2017;21:2613-2618 pubmed publisher
    ..aim of this study is to assess the levels and diagnostic accuracy of a set of bone resorption biomarkers, including TRAP-5, RANKL, and OPG in symptomatic and asymptomatic apical lesions and controls...
  43. Cifani P, Kentsis A. High Sensitivity Quantitative Proteomics Using Automated Multidimensional Nano-flow Chromatography and Accumulated Ion Monitoring on Quadrupole-Orbitrap-Linear Ion Trap Mass Spectrometer. Mol Cell Proteomics. 2017;16:2006-2016 pubmed publisher
    ..and quantitative accuracy of targeted proteomics using the recently developed hybrid quadrupole-Orbitrap-linear ion trap mass spectrometer...
  44. Rao T, Shao Y, Hamada N, Li Y, Ye H, Kang D, et al. Pharmacokinetic study based on a matrix-assisted laser desorption/ionization quadrupole ion trap time-of-flight imaging mass microscope combined with a novel relative exposure approach: A case of octreotide in mouse target tissues. Anal Chim Acta. 2017;952:71-80 pubmed publisher
    ..pressure ion-source chamber for matrix-assisted laser desorption/ionization (AP-MALDI) and a hybrid quadrupole ion trap time-of-flight (QIT-TOF) analyzer, was first validated and applied to visualize drug disposition in vivo...
  45. Piro A, Hernandez D, Luoma S, Feeley E, Finethy R, Yirga A, et al. Detection of Cytosolic Shigella flexneri via a C-Terminal Triple-Arginine Motif of GBP1 Inhibits Actin-Based Motility. MBio. 2017;8: pubmed publisher
    ..thailandensis These studies reveal that human GBP1 uniquely functions as an intracellular "glue trap," inhibiting the cytosolic movement of normally actin-propelled Gram-negative bacteria...
  46. Jara C, Leyton M, Osorio M, Silva V, Fleming F, Paz M, et al. Antioxidant, phenolic and antifungal profiles of Acanthus mollis (Acanthaceae). Nat Prod Res. 2017;31:2325-2328 pubmed publisher
    ..In addition, the antioxidant activity was evaluated using four methods: Hydrogen atoms transfer (TRAP, ORAC and DPPH assays), and single electron transfer (FRAP assay)...
  47. Ni X, Cottrell T, Buntin G, Li X, Wang W, Zhuang H. Monitoring of brown stink bug (Hemiptera: Pentatomidae) population dynamics in corn to predict its abundance using weather data. Insect Sci. 2017;: pubmed publisher
    ..e., late May to mid-September) using pheromone traps in three corn fields from 2005 to 2009. The trap data showed two peaks in early June and mid-August, respectively...
  48. McCravy K, Ruholl J. Bee (Hymenoptera: Apoidea) Diversity and Sampling Methodology in a Midwestern USA Deciduous Forest. Insects. 2017;8: pubmed publisher
    ..Among pan trap colors/elevations, elevated yellow pan traps collected the greatest number of bees (266) but the lowest diversity...
  49. Reber S, Mechtersheimer J, Nasif S, Benitez J, Colombo M, Domanski M, et al. CRISPR-Trap: a clean approach for the generation of gene knockouts and gene replacements in human cells. Mol Biol Cell. 2018;29:75-83 pubmed publisher
    ..we recommend an alternative approach for knocking out genes, which combines CRISPR/Cas9 with gene traps (CRISPR-Trap) and is applicable to ∼50% of all spliced human protein-coding genes and a large subset of lncRNAs...
  50. Antila S, Karaman S, Nurmi H, Airavaara M, Voutilainen M, Mathivet T, et al. Development and plasticity of meningeal lymphatic vessels. J Exp Med. 2017;214:3645-3667 pubmed publisher
    ..VEGF-C or VEGFR3 deletion, administration of the tyrosine kinase inhibitor sunitinib, or expression of VEGF-C/D trap, which also compromised the lymphatic drainage function...
  51. Swearingen K, Lindner S, Flannery E, Vaughan A, Morrison R, Patrapuvich R, et al. Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites. PLoS Negl Trop Dis. 2017;11:e0005791 pubmed publisher
    ..Additionally, the sporozoite surface proteins CSP and TRAP, which were recently discovered to be glycosylated in P...
  52. van der Linden M, Meyaard L. Fine-tuning neutrophil activation: Strategies and consequences. Immunol Lett. 2016;178:3-9 pubmed publisher
    ..The discovery of potential inhibitors of the release of neutrophil extracellular trap is still in its infancy...
  53. Bhalothia D, Yang Y. Trapping of Micro Particles in Nanoplasmonic Optical Lattice. J Vis Exp. 2017;: pubmed publisher
    ..We report the experimental procedures to trap micro-particles in a simple square nanoplasmonic optical lattice...
  54. Harlepp S, Thalmann F, Follain G, Goetz J. Hemodynamic forces can be accurately measured in vivo with optical tweezers. Mol Biol Cell. 2017;28:3252-3260 pubmed publisher
    ..Nevertheless, the main obstacles lie in the accurate determination of the trap stiffness in heterogeneous living organisms, at any position where the trap is used...
  55. Brox J, Kiefer P, Bujak M, Schaetz T, Landa H. Spectroscopy and Directed Transport of Topological Solitons in Crystals of Trapped Ions. Phys Rev Lett. 2017;119:153602 pubmed publisher
    ..solitons in crystalline structures consisting of several tens of laser-cooled ions confined in a radio frequency trap. Resonantly exciting localized, spectrally gapped vibrational modes of the soliton, a nonlinear mechanism leads to ..
  56. Ramadhar T, Zheng S, Chen Y, Clardy J. The Crystalline Sponge Method: A Solvent-Based Strategy to Facilitate Noncovalent Ordered Trapping of Solid and Liquid Organic Compounds. CrystEngComm. 2017;19:4528-4534 pubmed publisher
    A strategy that leverages solvent effects to noncovalently trap solid and unstable liquid organic compounds within a crystalline sponge ({[(ZnI2)3(tris(4-pyridyl)-1,3,5-triazine)2x(CHCl3
  57. Du L, Zhou A, Patel A, Rao M, Anderson K, Roy S. Unique patterns of organization and migration of FGF-expressing cells during Drosophila morphogenesis. Dev Biol. 2017;427:35-48 pubmed publisher
    ..To enable targeted gene expression specifically in the bnl expressing cells, a new LexA based bnl enhancer trap line was generated using CRISPR/Cas9 based genome editing...
  58. Wada Mihara C, Seto H, Ohba H, Tokunaga K, Kido J, Nagata T, et al. Local administration of calcitonin inhibits alveolar bone loss in an experimental periodontitis in rats. Biomed Pharmacother. 2018;97:765-770 pubmed publisher
    ..Histological examination clarified that there were fewer TRAP-positive cells in the CTN treatment groups than in the periodontitis group on day 5...
  59. An K, Shi X, Cui F, Cheng J, Liu N, Zhao X, et al. Characterization and overexpression of a glycosyl hydrolase family 16 beta-agarase YM01-1 from marine bacterium Catenovulum agarivorans YM01T. Protein Expr Purif. 2018;143:1-8 pubmed publisher
    ..YM01-1 was stable at a pH of pH 6.0-9.0 and temperatures below 45 °C. Thin layer chromatography (TLC) and ion trap mass spectrometer of the YM01-1 hydrolysis products displayed that YM01-1 was an endo-type β-agarase and degrades ..
  60. Orta M, Pastor N, Burgos Morón E, Domínguez I, Calderón Montaño J, Huertas Castaño C, et al. Zebularine induces replication-dependent double-strand breaks which are preferentially repaired by homologous recombination. DNA Repair (Amst). 2017;57:116-124 pubmed publisher
    ..It acts primarily as a trap for DNA methyl transferases (DNMTs) protein by forming covalent complexes between DNMT protein and zebularine-..
  61. Murali K, Kallatt S, Majumdar K. Substrate effects in high gain, low operating voltage SnSe2 photoconductor. Nanotechnology. 2017;: pubmed publisher
    ..In addition, the characteristics are often confounded by substrate induced trap effects...
  62. Xu C, Xu F, Konenkov N, Ding C. Simulation of the Simultaneous Dual-Frequency Resonance Excitation of Ions in a Linear Ion trap. J Mass Spectrom. 2017;: pubmed publisher
    The process of ion resonance dipolar excitation in a linear ion trap by two ejection waveforms with close frequencies is studied...
  63. Sun J, Jiao K, Niu L, Jiao Y, Song Q, Shen L, et al. Intrafibrillar silicified collagen scaffold modulates monocyte to promote cell homing, angiogenesis and bone regeneration. Biomaterials. 2017;113:203-216 pubmed publisher
    ..Increased numbers of TRAP-positive monocytes, nestin-positive bone marrow stromal cells (BMSCs) and CD31-positive and endomucin-positive new ..
  64. Lopes R, Eigen C, Navon N, Clement D, Smith R, Hadzibabic Z. Quantum Depletion of a Homogeneous Bose-Einstein Condensate. Phys Rev Lett. 2017;119:190404 pubmed publisher
    ..Our atomic homogeneous condensate is produced in an optical-box trap, the interactions are tuned via a magnetic Feshbach resonance, and the condensed fraction is determined by momentum-..
  65. Núñez A, Amo De Paz G, Ferencová Z, Rastrojo A, Guantes R, Garcia A, et al. Validation of the Hirst-Type Spore Trap for Simultaneous Monitoring of Prokaryotic and Eukaryotic Biodiversities in Urban Air Samples by Next-Generation Sequencing. Appl Environ Microbiol. 2017;83: pubmed publisher
    ..Here, we assessed the use of the Hirst-type spore trap to characterize the global airborne biota by high-throughput DNA sequencing, selecting regions of the 16S rRNA gene ..
  66. Brennan P, Cheng T, Pellicci D, Watts G, Veerapen N, Young D, et al. Structural determination of lipid antigens captured at the CD1d-T-cell receptor interface. Proc Natl Acad Sci U S A. 2017;114:8348-8353 pubmed publisher
    ..The specific antigens captured by this "TCR trap" method were identified as ?-linked monohexosylceramides by mass spectrometry fragmentation patterns that ..
  67. Guo J, Li W, Wu Y, Jing X, Huang J, Zhang J, et al. Meclizine Prevents Ovariectomy-Induced Bone Loss and Inhibits Osteoclastogenesis Partially by Upregulating PXR. Front Pharmacol. 2017;8:693 pubmed publisher
    ..Meanwhile, meclizine reduced the expression of osteoclast-specific genes, including TRAP, MMP9, Cathepsin K and NFATc1...
  68. Höök P, Litvinov R, Kim O, Xu S, Xu Z, Bennett J, et al. Strong Binding of Platelet Integrin αIIbβ3 to Fibrin Clots: Potential Target to Destabilize Thrombi. Sci Rep. 2017;7:13001 pubmed publisher
    ..Surprisingly, there is little understanding of αIIbβ3 interaction with fibrin polymers. Here we used an optical trap-based system to measure the binding of single αIIbβ3 molecules to polymeric fibrin and compare it to αIIbβ3 ..
  69. Muimo R, Alothaid H, Mehta A. NM23 proteins: innocent bystanders or local energy boosters for CFTR?. Lab Invest. 2018;98:272-282 pubmed publisher
    ..CFTR alone among family members possesses a trap for other proteins that it unfurls as a 'fish-net' and which bears consensus phosphorylation sites for many protein ..
  70. Okano H, Hayashi S, Tanimura T, Sawamoto K, Yoshikawa S, Watanabe J, et al. Regulation of Drosophila neural development by a putative secreted protein. Differentiation. 1992;52:1-11 pubmed
    ..expression of the sty gene during development by histochemical staining for lacZ expression from enhancer trap elements inserted within the sty gene...
  71. Attard C, Beheregaray L, Möller L. Genotyping-by-sequencing for estimating relatedness in non-model organisms: avoiding the trap of precise bias. Mol Ecol Resour. 2017;: pubmed publisher
    ..This article is protected by copyright. All rights reserved...
  72. Abaza L, Taamalli A, Arráez Román D, Segura Carretero A, Fernández Gutierrérez A, Zarrouk M, et al. Changes in phenolic composition in olive tree parts according to development stage. Food Res Int. 2017;100:454-461 pubmed publisher
    ..The extracts were then analyzed by using high performance liquid chromatography coupled to time of flight and ion trap mass spectrometry detectors...
  73. Scavuzzi B, Simão A, Iriyoda T, Lozovoy M, Stadtlober N, Franchi Santos L, et al. Increased lipid and protein oxidation and lowered anti-oxidant defenses in systemic lupus erythematosus are associated with severity of illness, autoimmunity, increased adhesion molecules, and Th1 and Th17 immune shift. Immunol Res. 2018;66:158-171 pubmed publisher
    ..acid (DNA)/ribonucleic acid (RNA) oxidative degradation, and total radical-trapping anti-oxidant parameter (TRAP)...
  74. Mawale R, Ausekar M, Prokeš L, Nazabal V, Baudet E, Halenkovič T, et al. Laser Desorption Ionization of As2Ch3 (Ch = S, Se, and Te) Chalcogenides Using Quadrupole Ion Trap Time-of-Flight Mass Spectrometry: A Comparative Study. J Am Soc Mass Spectrom. 2017;28:2569-2579 pubmed publisher
    Laser desorption ionization using time-of-flight mass spectrometer afforded with quadrupole ion trap was used to study As2Ch3 (Ch = S, Se, and Te) bulk chalcogenide materials...
  75. Ning H, Liu X, Zhang H, Fang Z, Cai W, Chen J, et al. Effect of Intrinsic Stress on Structural and Optical Properties of Amorphous Si-Doped SnO? Thin-Film. Materials (Basel). 2017;10: pubmed publisher
    ..7 cm²/Vs, a ratio of Ion/Ioff as 7.34 × 107, a steep sub-threshold swing at 0.625 V/decade, and a low trap density of 7.96 × 1011 eV-1·cm-2, respectively.
  76. Weisslocker Schaetzel M, Lembrouk M, Santolini J, Dorlet P. Revisiting the Val/Ile Mutation in Mammalian and Bacterial Nitric Oxide Synthases: A Spectroscopic and Kinetic Study. Biochemistry. 2017;56:748-756 pubmed publisher
    ..On the basis of these results, we performed rapid freeze-quench experiments to trap the biopterin radical and found the same results that we had obtained for the wild types...
  77. Ang M, Dutta A, Wee W, Dymock D, Paterson I, Choo S. Comparative Genome Analysis of Fusobacterium nucleatum. Genome Biol Evol. 2016;8:2928-2938 pubmed
    ..we found a horizontally transferred W1481-specific genomic island harboring the tripartite ATP-independent (TRAP)-like transporter genes, suggesting this bacterium might have a high-affinity transport system for the C4-..
  78. Grasso S, Neumann A, Lang I, Etscheid M, von Köckritz Blickwede M, Kanse S. Interaction of factor VII activating protease (FSAP) with neutrophil extracellular traps (NETs). Thromb Res. 2018;161:36-42 pubmed publisher
    ..actively extruded into the extracellular space by neutrophils through a process called neutrophil extracellular trap (NET) formation (NETosis). NETs are thought to be involved in host defense, inflammation as well as thrombosis...
  79. Thomas D, Puyoo E, Le Berre M, Militaru L, Koneti S, Malchere A, et al. Investigation of the in-plane and out-of-plane electrical properties of metallic nanoparticles in dielectric matrix thin films elaborated by atomic layer deposition. Nanotechnology. 2017;28:455602 pubmed publisher
    ..Both vertical and planar test structures show a Poole-Frenkel conduction mechanism. Low trap energy levels (<0...
  80. Villalta P, Hochalter J, Hecht S. Ultrasensitive High-Resolution Mass Spectrometric Analysis of a DNA Adduct of the Carcinogen Benzo[a]pyrene in Human Lung. Anal Chem. 2017;: pubmed publisher
    ..These efforts are directly translatable to the development of sensitive detection of other small molecules using trap-based LC-ESI-MS/MS detection...
  81. Choi J, Vaidyanathan G, Koumarianou E, Kang C, Zalutsky M. Astatine-211 labeled anti-HER2 5F7 single domain antibody fragment conjugates: radiolabeling and preliminary evaluation. Nucl Med Biol. 2018;56:10-20 pubmed publisher
    ..2-h half-life α-emitter, if appropriate labeling chemistry can be devised to trap 211At in cancer cells after sdAb binding...
  82. Nardiello D, Natale A, Palermo C, Quinto M, Centonze D. Combined use of peptide ion and normalized delta scores to evaluate milk authenticity by ion-trap based proteomics coupled with error tolerant searching. Talanta. 2017;164:684-692 pubmed publisher
    ..to measure the quality of search results, the definition of a scoring criterion is still highly desirable in ion-trap based proteomics...
  83. Wang W, Peng W, Ning X. Increased levels of neutrophil extracellular trap remnants in the serum of patients with rheumatoid arthritis. Int J Rheum Dis. 2017;: pubmed publisher
    ..The aim of this study was to evaluate serum levels of NET remnants in patients with rheumatoid arthritis (RA), as well as potential associations between NET remnants and indicators of RA...
  84. Golovko A, Kojukhov A, Guan B, Morpurgo B, Merrick W, Mazumder B, et al. The eIF2A knockout mouse. Cell Cycle. 2016;15:3115-3120 pubmed
    ..function in mammalian systems in vivo, we have obtained homozygous eIF2A-total knockout (KO) mice, in which a gene trap cassette was inserted between eIF2A exons 1 and 2 disrupting expression of all exons downstream of the insertion...
  85. Hsu Y, Garrison J, Kim G, Schmitz A, Searby C, Zhang Q, et al. BBSome function is required for both the morphogenesis and maintenance of the photoreceptor outer segment. PLoS Genet. 2017;13:e1007057 pubmed publisher
    ..Notably, using a mouse model in which a gene trap inhibiting Bbs8 gene expression can be removed by an inducible FLP recombinase, we show that when BBS8 is restored ..
  86. Anand B, Dubey K, Shekhawat D, Kar K. Intrinsic property of phenylalanine to trigger protein aggregation and hemolysis has a direct relevance to phenylketonuria. Sci Rep. 2017;7:11146 pubmed publisher
    ..higher order entities is predicted to promote both hydrophobic and electrostatic interaction, sufficient enough to trap proteins and to preferentially interact with the membrane components of RBCs...
  87. Lee I, Sng E, Lee K, Molton J, Chan M, Kalimuddin S, et al. Comparison of Diabetic and Non-diabetic Human Leukocytic Responses to Different Capsule Types of Klebsiella pneumoniae Responsible for Causing Pyogenic Liver Abscess. Front Cell Infect Microbiol. 2017;7:401 pubmed publisher
    ..individuals indicating neutrophil activation, but diabetic status had no effect on these neutrophil extracellular trap (NET) biomarkers in both subject groups...
  88. Souza H, Laurindo F, Ziegelstein R, Berlowitz C, Zweier J. Vascular NAD(P)H oxidase is distinct from the phagocytic enzyme and modulates vascular reactivity control. Am J Physiol Heart Circ Physiol. 2001;280:H658-67 pubmed
    ..vascular superoxide generation was measured by electron paramagnetic resonance spectroscopy using the spin-trap 5,5'-dimethly-pyrroline-N-oxide in aortas from wild-type (WT) and gp91(phox)-deficient mice (gp91(phox)-/-), which ..
  89. Zhang Y, Jiang P, Li W, Liu X, Lu Y, Huang Z, et al. Calcineurin/NFAT signaling pathway mediates titanium particle?induced inflammation and osteoclast formation by inhibiting RANKL and M?CSF in vitro. Mol Med Rep. 2017;16:8223-8230 pubmed publisher
    ..Osteoclastogenesis was measured by tartrate?resistant acid phosphatase (TRAP) mRNA quantification...
  90. Chen Y, Huang Y, Yan C, Chiu K, Wei Q, Zhao J, et al. Abnormal subchondral bone remodeling and its association with articular cartilage degradation in knees of type 2 diabetes patients. Bone Res. 2017;5:17034 pubmed publisher
    ..Cartilage degradation was estimated using histology. The expression of tartrate-resistant acidic phosphatase (TRAP), osterix, and osteocalcin were calculated using immunohistochemistry...