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Genomes and Genes
| FOXI1SummaryGene Symbol: FOXI1 Description: forkhead box I1 Alias: FKH10, FKHL10, FREAC-6, FREAC6, HFH-3, HFH3, HNF-3/fork-head homolog 3, HNF-3/fork-head homolog-3, forkhead box protein I1, forkhead-like 10, forkhead-related activator 6, forkhead-related protein FKHL10, forkhead-related transcription factor 6, hepatocyte nuclear factor 3 forkhead homolog 3 Species: human Top Publications
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Publications
The winged helix transcriptional activator HFH-3 is expressed in the distal tubules of embryonic and adult mouse kidneyD G Overdier
Department of Biochemistry, University of Illinois, Chicago, Illinois 60612 7334, USA
J Biol Chem 272:13725-30. 1997..These putative HFH-3 target genes include the Na/K-ATPase, Na/H and anion exchangers, E-cadherin, and mineralocorticoid receptor genes as well as genes for the transcription factors HNF-1, vHNF-1, and HNF-4...
Molecular and functional characterization of human pendrin and its allelic variantsSilvia Dossena
Institute of Pharmacology and Toxicology, Paracelsus Medical University, Salzburg, Austria
Cell Physiol Biochem 28:451-66. 2011..the pendrin coding region, such as its promoter region and/or the coding regions of functionally related genes (FOXI1, KCNJ10), should be taken into account...
Transcriptional control of terminal nephron differentiationSamir S El-Dahr
Section of Pediatric Nephrology, Department of Pediatrics, SL 37, Tulane Univ Health Sciences Center, 1430 Tulane Ave, New Orleans, LA 70112, USA
Am J Physiol Renal Physiol 294:F1273-8. 2008..nuclear factor-1beta) promote the terminal epithelial differentiation fate, others (Notch, Brn-1, IRX, KLF4, and Foxi1) tend to regulate differentiation of specific nephron segments and individual cell types...
Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteinsJue Zeng
Division of Hematology Oncology, Department of Medicine, University of California, Irvine, CA, USA
Nucleic Acids Res 36:e8. 2008..The experimental approach was validated with the tumor suppressor protein p53 and the forkhead protein FoxI1 using genomic libraries for zebrafish and mouse generated by shotgun cloning of short genomic fragments...
Distinct roles of Fgf8, Foxi1, Dlx3b and Pax8/2 during otic vesicle induction and maintenance in medakaNarges Aghaallaei
Institute of Animal Breeding and Genetics, University of Veterinary Medicine, Veterinarplatz 1, A 1210 Vienna, Austria
Dev Biol 307:408-20. 2007..We demonstrate that misexpression of Fgf8, Dlx3b and Foxi1 during early gastrulation is sufficient to produce ectopic otic vesicles...
Changes in retinoic acid signaling alter otic patterningStefan Hans
Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
Development 134:2449-58. 2007..Excess RA leads to ectopic foxi1 expression throughout the entire preplacodal domain. Foxi1 provides competence to adopt an otic fate...
Transcriptional control of SLC26A4 is involved in Pendred syndrome and nonsyndromic enlargement of vestibular aqueduct (DFNB4)Tao Yang
Department of Otolaryngology Head and Neck, University of Iowa, Iowa City, IA 52242, USA
Am J Hum Genet 80:1055-63. 2007..We have identified and characterized a key transcriptional regulatory element in the SLC26A4 promoter that binds FOXI1, a transcriptional activator of SLC26A4. In nine patients with PS or nonsyndromic EVA, a novel c...
Fgf-dependent otic induction requires competence provided by Foxi1 and Dlx3bStefan Hans
Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
BMC Dev Biol 7:5. 2007..We previously suggested that Foxi1 and Dlx3b may provide competence to form the ear because loss of both foxi1 and dlx3b results in ablation of all ..
Epibranchial and otic placodes are induced by a common Fgf signal, but their subsequent development is independentShun Kuo Sun
Children s Brain Tumour Research Centre, Institute of Genetics, Queen s Medical Centre, University of Nottingham, Nottingham, NG7 2UH, UK
Dev Biol 303:675-86. 2007..However, the forkhead factor, Foxi1, is required for both otic and epibranchial placode development...
Specification of epibranchial placodes in zebrafishAlexei Nechiporuk
Department of Biological Structure, University of Washington, Seattle, WA 98195 7420, USA
Development 134:611-23. 2007..Here, we show that zebrafish embryos mutant for fgf3 and fgf8 do not express early EB placode markers, including foxi1 and pax2a...
Zebrafish atoh1 genes: classic proneural activity in the inner ear and regulation by Fgf and NotchBonny B Millimaki
Biology Department, Texas A and M University, College Station, TX 77843 3258, USA
Development 134:295-305. 2007..Fgf3 and Fgf8 are upstream activators of atoh1 genes during both phases, and foxi1, pax8 and dlx genes regulate atoh1b in the preplacode...
The forkhead transcription factor Foxi1 is a master regulator of vacuolar H-ATPase proton pump subunits in the inner ear, kidney and epididymisHilmar Vidarsson
Center of Medical Genetics, Institute of Biomedicine, The Sahlgrenska Academy, Goteborg University, Goteborg, Sweden
PLoS ONE 4:e4471. 2009..that expression of four such subunits A1, B1, E2 and a4 all co-localize with the forkhead transcription factor Foxi1 in a subset of epithelial cells at these three locations...
Mechanism of development of ionocytes rich in vacuolar-type H(+)-ATPase in the skin of zebrafish larvaeMasahiro Esaki
Department of Biological Sciences, Tokyo Institute of Technology, Midori ku, Yokohama, Japan
Dev Biol 329:116-29. 2009..In the present study, we analyzed a zebrafish mutant, quadro (quo), deficient in foxi1 gene expression and found that foxi1 is essential for development of an MRC subpopulation rich in vacuolar-type H(+..
Using a yeast inverse one-hybrid system to identify functional binding sites of transcription factorsJizhou Yan
Institute for Marine Biosystem and Neurosciences, Department of Hydrobiology, Shanghai Ocean University, College of Fisheries and Life Sciences, Lingang New City, Shanghai, China
Methods Mol Biol 786:275-90. 2012..g., zebrafish FoxI1. The bound fragments in hundreds of positive clones are sequenced and retested for their binding activities using ..
Identification of SLC26A4 mutations in patients with hearing loss and enlarged vestibular aqueduct using high-resolution melting curve analysisStephen Mercer
Murdoch Childrens Research Institute, Royal Children s Hospital, Flemington Road, Parkville, Melbourne, Australia
Genet Test Mol Biomarkers 15:365-8. 2011..We also used this approach to scan for mutations in KCNJ10 and FOXI1, two genes reported to play a role in the pathogenesis of Pendred syndrome and enlarged vestibular aqueduct...
Specification of ion transport cells in the Xenopus larval skinIan K Quigley
The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA
Development 138:705-14. 2011..Like PSCs in other species, we show that the expression of these genes is likely to be driven by an ortholog of foxi1, which is also sufficient to promote the formation of PSC precursors...
Pax2/8 proteins coordinate sequential induction of otic and epibranchial placodes through differential regulation of foxi1, sox3 and fgf24Mahesh S Padanad
Biology Department, Texas A and M University, College Station, TX 77843 3258, USA
Dev Biol 351:90-8. 2011..In zebrafish, both are initiated by localized Fgf signaling plus the ubiquitous competence factor Foxi1, and both express pax8 and sox3 in response...
Variants in CFTR untranslated regions are associated with congenital bilateral absence of the vas deferensEstelle Lopez
Université Montpellier1, UFR de Medecine, Montpellier, France
J Med Genet 48:152-9. 2011..Despite extensive testing for point mutations and large rearrangements, a small proportion of alleles still remains unidentified in CBAVD patients...
African signatures of recent positive selection in human FOXI1Andres Moreno-Estrada
Departament de Ciencies Experimentals i de la Salut, Universitat Pompeu Fabra, Institut de Biologia Evolutiva UPF CSIC, Parc de Recerca Biomedica de Barcelona, 08003 Barcelona, Spain
BMC Evol Biol 10:267. 2010The human FOXI1 gene codes for a transcription factor involved in the physiology of the inner ear, testis, and kidney. Using three interspecies comparisons, it has been suggested that this may be a gene under human-specific selection...
Screening of SLC26A4, FOXI1 and KCNJ10 genes in unilateral hearing impairment with ipsilateral enlarged vestibular aqueductLaurence Jonard
AP HP, Centre de Référence des Surdités Généttiques, Hopital Armand Trousseau, Paris, France
Int J Pediatr Otorhinolaryngol 74:1049-53. 2010..To investigate the implication of SLC26A4, FOXI and KCNJ10 genes in unilateral hearing impairment associated with ipsilateral inner ear malformation (Enlargement of the vestibular aqueduct and/or Mondini dysplasia)...
Phenotypic analyses and mutation screening of the SLC26A4 and FOXI1 genes in 101 Taiwanese families with bilateral nonsyndromic enlarged vestibular aqueduct (DFNB4) or Pendred syndromeChen Chi Wu
Department of Otolaryngology, National Taiwan University Hospital, Taipei, Taiwan
Audiol Neurootol 15:57-66. 2010..we screened related genomic fragments, including the SLC26A4 coding regions, the SLC26A4 promoter and the FOXI1 transcription factor gene, in 101 Taiwanese families, and analyzed their phenotypic and genotypic results...
Requirement for Shh and Fox family genes at different stages in sweat gland developmentMakoto Kunisada
Laboratory of Genetics, National Institute on Aging, National Institutes of Health, NIH Biomedical Research Center, Baltimore, MD 21224, USA
Hum Mol Genet 18:1769-78. 2009..During the further development of sweat gland secretory portions, Foxa1 and Foxi1, not at all expressed in hair follicles, were progressively up-regulated in WT but not in Tabby footpads...
The transcription factor six1 inhibits neuronal and promotes hair cell fate in the developing zebrafish (Danio rerio) inner earOlivier Bricaud
Leslie and Susan Gonda Goldschmied Cell and Molecular Biology Department, House Ear Institute, Los Angeles, California 90057, USA
J Neurosci 26:10438-51. 2006..Furthermore, six1 expression appears to be regulated by pax2b and also by foxi1 (forkhead box I1) as expected for an early inducer of the otic placode...
Expression of marker genes during early ear development in medakaSarah Hochmann
Institute of Animal Breeding and Genetics, University of Veterinary Medicine, Veterinarplatz 1, A 1210 Vienna, Austria
Gene Expr Patterns 7:355-62. 2007..Further investigations on the molecular level identified in zebrafish Fgf3, Fgf8, Foxi1, Pax8, Dlx3b and Dlx4b genes as key players during the induction phase...
Epididymal expression of the forkhead transcription factor Foxi1 is required for male fertilitySandra Rodrigo Blomqvist
Center of Medical Genetics, Institute of Biomedicine, Goteborg University, Goteborg, Sweden
EMBO J 25:4131-41. 2006..This depends on active proton secretion into the epididymal lumen. We have identified Foxi1 as an important regulator of gene expression in narrow and clear cells-the major proton secretory cells of ..
A fork in the road of cell differentiation in the kidney tubuleQais Al-Awqati
Department of Medicine, College of Physicians and Surgeons, Columbia University, New York, New York 10032, USA
J Clin Invest 113:1528-30. 2004..In this issue, Blomqvist et al. find that mice lacking Foxi1 have no intercalated cells in the kidney...
Expression and phylogenetic analyses of three zebrafish FoxI class genesKeely S Solomon
Department of Biology, Emory University, Atlanta, Georgia, USA
Dev Dyn 228:301-7. 2003..We have reported previously the identification of zebrafish foxi1, which is required for otic placode and jaw development...
Zebrafish foxi one modulates cellular responses to Fgf signaling required for the integrity of ear and jaw patterningRobert M Nissen
Center for Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
Development 130:2543-54. 2003..We identified foxi one (foo), the zebrafish ortholog of Foxi1 (FREAC6, FKHL10, HFH-3, Fkh10) and a member of the forkhead domain transcriptional regulator family, as the gene mutated ..
Transcriptional regulation of human CYP3A4 basal expression by CCAAT enhancer-binding protein alpha and hepatocyte nuclear factor-3 gammaC Rodriguez-Antona
Departamento de Bioquimica, Facultad de Medicina, Universidad de Valencia, Valencia, Spain
Mol Pharmacol 63:1180-9. 2003..These findings revealed that C/EBP alpha and HNF-3 gamma cooperatively regulate CYP3A4 expression in hepatic cells by a mechanism that probably involves chromatin remodeling...
Lack of pendrin expression leads to deafness and expansion of the endolymphatic compartment in inner ears of Foxi1 null mutant miceMalin Hulander
Medical Genetics, Department of Medical Biochemistry, Institute of Anatomy and Cell Biology, Goteborg University, Box 440, SE 405 30 Goteborg, Sweden
Development 130:2013-25. 2003Mice that lack the winged helix/forkhead gene Foxi1 (also known as Fkh10) are deaf and display shaker/waltzer behavior, an indication of disturbed balance. While Foxi1 is expressed in the entire otic vesicle at E9...
Zebrafish foxi1 mediates otic placode formation and jaw developmentKeely S Solomon
Department of Biology, Emory University, Atlanta, GA 30322, USA
Development 130:929-40. 2003..We show that hearsay disrupts foxi1, a forkhead domain-containing gene, which is expressed in otic precursor cells before placodes become visible; ..
The winged helix transcription factor Fkh10 is required for normal development of the inner earM Hulander
Department of Molecular Biology, The Lundberg Laboratory, Goteborg University, Sweden
Nat Genet 20:374-6. 1998..These findings implicate Fkh10 as an early regulator necessary for development of both cochlea and vestibulum and identify its human homologue FKHL10 as a previously unknown candidate deafness gene at 5q34.
Chromosomal localization of six human forkhead genes, freac-1 (FKHL5), -3 (FKHL7), -4 (FKHL8), -5 (FKHL9), -6 (FKHL10), and -8 (FKHL12)C Larsson
Department of Molecular Medicine, Karolinska Hospital, Stockholm, Sweden
Genomics 30:464-9. 1995..HGMW-approved symbols FKHL5, FKHL7, FKHL8, FKHL9 and FKHL10). We also report the sequence and the chromosomal position of a novel human forkhead gene, freac-8 (FKHL12)...
Cloning and characterization of seven human forkhead proteins: binding site specificity and DNA bendingS Pierrou
Department of Molecular Biology, Goteborg University, Sweden
EMBO J 13:5002-12. 1994..Applying a circular permutation assay, we show that binding of FREAC proteins to their cognate sites results in bending of the DNA at an angle of 80-90 degrees...
Distal renal tubular acidosis in mice that lack the forkhead transcription factor Foxi1Sandra Rodrigo Blomqvist
Medical Genetics, Department of Medical Biochemistry, Institute of Anatomy and Cell Biology, Goteborg University, Sweden
J Clin Invest 113:1560-70. 2004While macro- and microscopic kidney development appear to proceed normally in mice that lack Foxi1, electron microscopy reveals an altered ultrastructure of cells lining the distal nephron...
Genetic interactions underlying otic placode induction and formationKeely S Solomon
Department of Biology, Emory University, Atlanta, Georgia, USA
Dev Dyn 230:419-33. 2004..In zebrafish, fgf3 and fgf8, dlx3b and dlx4b, and foxi1 have been identified as the earliest-acting genes in this process...
Foxg1 is required for morphogenesis and histogenesis of the mammalian inner earSarah Pauley
Creighton University, Department of Biomedical Sciences, Omaha, Nebraska 68178, USA
Dev Dyn 235:2470-82. 2006..Several Fox genes (Foxi1, Foxg1) are expressed in the developing otocyst of both zebrafish and mammals...
The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structureJizhou Yan
National Human Genome Research Institute, Genome Technology Branch, NIH, Bldg 50, Rm 5537, 50 South Dr, Bethesda, MD 20892, USA
Mol Cell Biol 26:155-68. 2006..We created a stable cell line expressing FoxI1-green fluorescent protein (GFP) or FoxI1-V5 fusion proteins under control of the reverse tetracycline-controlled ..
Ubiquitous and kidney-specific subunits of vacuolar H+-ATPase are differentially expressed during nephrogenesisFrancois Jouret
Division of Nephrology, Universite Catholique de Louvain, 10 Avenue Hippocrate, Brussels, Belgium B 1200
J Am Soc Nephrol 16:3235-46. 2005..expression of IC-specific a4, B1, G3, and C2 subunits, after the induction of the forkhead transcription factor Foxi1. From E15.5, Foxi1 mRNA was detected in IC, where it co-distributed with B1 in late nephrogenesis...
The forkhead transcription factor Foxi1 directly activates the AE4 promoterIngo Kurth
Institut fur Humangenetik, Universitatsklinikum Hamburg Eppendorf, Butenfeld 42, 22529 Hamburg, Germany
Biochem J 393:277-83. 2006..Mice with a targeted disruption of the gene for the forkhead transcription factor Foxi1 display renal tubular acidosis due to an intercalated cell-differentiation defect...
Endoderm-derived Fgf3 is necessary and sufficient for inducing neurogenesis in the epibranchial placodes in zebrafishAlexei Nechiporuk
Department of Biological Structure, University of Washington, Seattle, WA 98195 7420, USA
Development 132:3717-30. 2005..Surprisingly, ectodermal foxi1 expression, a marker for the epibranchial placode precursors, is present in both endoderm-deficient embryos and ..
Zebrafish pax8 is required for otic placode induction and plays a redundant role with Pax2 genes in the maintenance of the otic placodeMelinda D Mackereth
Department of Biology, Emory University, Atlanta, GA 30322, USA
Development 132:371-82. 2005..In contrast, the phenotype caused by disrupting foxi1, which is required for pax8 expression, was not enhanced by simultaneously disrupting pax8...
Human FOX gene family (Review)Masuko Katoh
M and M Medical BioInformatics, Hongo 113 0033, Japan
Int J Oncol 25:1495-500. 2004..foxd2, foxd3, foxd4, foxd5 (foxd4l1), foxd6 (foxd4l3), foxe1, foxe2, foxe3, foxf1, foxf2, foxg1 (foxg1b), foxh1, foxi1, foxj1, foxj2, foxj3, foxk1, foxk2, foxl1, foxl2, foxm1, foxn1, foxn2 (htlf), foxn3 (ches1), foxn4, foxn5 (foxr1), ..
Pax8 and Pax2a function synergistically in otic specification, downstream of the Foxi1 and Dlx3b transcription factorsStefan Hans
Institute of Neuroscience, University of Oregon, Eugene, OR 97403, USA
Development 131:5091-102. 2004..further provide evidence that pax8 expression and pax2a expression are regulated by two independent factors, Foxi1 and Dlx3b, respectively. Combined loss of both factors eliminates all indications of otic specification...
Expression of mouse Foxi class genes in early craniofacial developmentTakahiro Ohyama
Gonda Department of Cell and Molecular Biology, House Ear Institute, 2100 West 3rd Street, Los Angeles, CA 90057, USA
Dev Dyn 231:640-6. 2004..Its expression becomes restricted to the ectoderm and the endoderm of the branchial pouches at E10.5. Foxi1 expression is first detected in the endolymphatic duct in the otic vesicle at E10.5...
Identification of nine tissue-specific transcription factors of the hepatocyte nuclear factor 3/forkhead DNA-binding-domain familyD E Clevidence
Department of Biochemistry M C 536, University of Illinois College of Medicine, Chicago 60612
Proc Natl Acad Sci U S A 90:3948-52. 1993..The HNF-3/fkh motif therefore comprises a large gene family of transcription factors that play a role in tissue-specific gene regulation and development...
Research Grants
- GENETIC REGULATION OF INNER EAR FORMATIONMonte Westerfield; Fiscal Year: 2010..and that the Fgf and Bmp signaling pathways converge on a set of transcription factors, notably Dlx3b, Sox9a, and Foxi1, that mediate induction and differentiation of the otic primordium...
- The function of Foxi3 in craniofacial developmentTakahiro Ohyama; Fiscal Year: 2007..In addition, recent studies have shown that zebrafish foxi1 is required for otic and jaw development...
- Non-Syndromic Hearing Loss -- A Collaborative StudyRichard Smith; Fiscal Year: 2007..ARNSD genes; (2) To define genotype-phenotype associations in persons with DFNB1 deafness; (3) To study Pendred syndrome as a complex disease, focusing on the role of FOXI1 and its interacting partners in the Pendred syndrome phenotype.
- ACTIVE H+ TRANSPORT IN URINARY ACIDIFICATIONQais Al Awqati; Fiscal Year: 2006..These studies should define the function of this critical new protein in differentiation of the kidney tubule, in acid base balance and in early embryonic development. ..
- TERMINAL DIFFERENTIATION OF THE RENAL EPITHELIUMSamir El Dahr; Fiscal Year: 2006..The results should advance our understanding of the transcriptional program of epithelial cell differentiation and elucidate a novel function for p53 in regulating epithelial cell differentiation in the kidney. ..
- Inducible Dysplastic Nephropathy in B2-Deficient MiceSamir El Dahr; Fiscal Year: 2007..We anticipate that new pathogenetic paradigms and therapeutic strategies will emerge from our studies that can hopefully be applied for the treatment of renal dysgenesis. ..
- TERMINAL DIFFERENTIATION OF THE RENAL EPITHELIUMSamir S El Dahr; Fiscal Year: 2010....
- Histone Deacetylases and Kidney DevelopmentSamir S El Dahr; Fiscal Year: 2010..Thus, understanding the epigenetic regulation of kidney development may open new avenues to the treatment or prevention of kidney and urinary tract malformations and kidney failure. ..
- Inducible Dysplastic Nephropathy in B2-Deficient MiceSamir S El Dahr; Fiscal Year: 2010..g., BdkrB2-/-) interacts with a defined embryonic stressor (gestational salt) to alter the regulation of kidney development may open new avenues to the treatment or prevention of kidney and urinary tract malformations. ..
- TERMINAL DIFFERENTIATION OF THE RENAL EPITHELIUMSamir S El Dahr; Fiscal Year: 2010....
- Histone Deacetylases and Kidney DevelopmentSamir El Dahr; Fiscal Year: 2009..Thus, understanding the epigenetic regulation of kidney development may open new avenues to the treatment or prevention of kidney and urinary tract malformations and kidney failure. ..
- TERMINAL DIFFERENTIATION OF THE RENAL EPITHELIUMSamir El Dahr; Fiscal Year: 2009....
- ACTIVE H+ TRANSPORT IN URINARY ACIDIFICATIONQais Al Awqati; Fiscal Year: 2002....
- INDUCIBLE DYSPLASTIC NEPHROPATHY IN B2-DEFICENT MICESamir El Dahr; Fiscal Year: 2003....
