D

Summary

Gene Symbol: D
Description: external scaffolding protein
Species: Enterobacteria phage phiX174 sensu lato

Top Publications

  1. Heidekamp F, Langeveld S, Baas P, Jansz H. Studies of the recognition sequence of phi X174 gene A protein. Cleavage site of phi X gene A protein in St-1 RFI DNA. Nucleic Acids Res. 1980;8:2009-21 pubmed
    ..The results suggest that the recognition sequence of the phi X174 gene A protein lies within these 10 nucleotides. ..
  2. Sanger F, Coulson A, Friedmann T, Air G, Barrell B, Brown N, et al. The nucleotide sequence of bacteriophage phiX174. J Mol Biol. 1978;125:225-46 pubmed
  3. Fiddes J. Nucleotide sequence of the intercistronic region between genes G and F in bacteriophage phiX174 DNA. J Mol Biol. 1976;107:1-24 pubmed
  4. Ueda K, Morita J, Komano T. Sequence specificity of heat-labile sites in DNA induced by mitomycin C. Biochemistry. 1984;23:1634-40 pubmed
    ..The 3' termini seemed not to have simple structures, judging from their electrophoretic mobilities. Oxygen radicals such as singlet oxygen and hydroxyl radical were possibly involved in the induction of heat-labile sites. ..
  5. Air G, Els M, Brown L, Laver W, Webster R. Location of antigenic sites on the three-dimensional structure of the influenza N2 virus neuraminidase. Virology. 1985;145:237-48 pubmed
    ..There are, however, several aspects of the antigen-antibody interaction which are not easily explained, and which will probably only be fully elucidated by X-ray crystallographic analysis of NA-antibody complexes...
  6. Sedat J, Ziff E, Galibert F. Direct determination of DNA nucleotide sequences. Structure of large specific fragments of bacteriophage phiX174 DNA. J Mol Biol. 1976;107:391-416 pubmed
  7. Merville M, Piette J, Lopez M, Decuyper J, Van de Vorst A. Termination sites of the in vitro DNA synthesis on single-stranded DNA photosensitized by promazines. J Biol Chem. 1984;259:15069-77 pubmed
    ..Kinetics of chlorpromazine photoaddition on single-stranded and double-stranded DNAs were determined. ..
  8. Robertson H, Barrell B, Weith H, Donelson J. Isolation and sequence analysis of a ribosome-protected fragment from bacteriophage phiX 174 DNA. Nat New Biol. 1973;241:38-40 pubmed
  9. Barrell B, Weith H, Donelson J, Robertson H. Sequence analysis of the ribosome-protected bacteriophase phiX174 DNA fragment containing the gene G initiation site. J Mol Biol. 1975;92:377-93 pubmed

More Information

Publications23

  1. Air G, Blackburn E, Coulson A, Galibert F, Sanger F, Sedat J, et al. Gene F of bacteriophage phiX174. Correlation of nucleotide sequences from the DNA and amino acid sequences from the gene product. J Mol Biol. 1976;107:445-58 pubmed
  2. Mansfeld A, Vereijken J, Jansz H. The nucleotide sequence of a DNA fragment, 71 base pairs in length, near the origin of DNA replication of bacteriophage 0X174. Nucleic Acids Res. 1976;3:2827-44 pubmed
    ..The sequence suggests that at least 4 of the 5 amber mutants 2 that have been mapped on this fragment are identical. On account of this and other evidence a reading frame is proposed. ..
  3. Smith M, Brown N, Air G, Barrell B, Coulson A, Hutchison C, et al. DNA sequence at the C termini of the overlapping genes A and B in bacteriophage phi X174. Nature. 1977;265:702-5 pubmed
  4. Brown N, Smith M. The sequence of a region of bacteriophage phiX174 DNA coding for parts of genes A and B. J Mol Biol. 1977;116:1-28 pubmed
  5. Fiddes J. The nucleotide sequence of a viral DNA. Sci Am. 1977;237:54-67 pubmed
  6. Air G, Sanger F, Coulson A. Nucleotide and amino acid sequences of gene G of omegaX174. J Mol Biol. 1976;108:519-33 pubmed
  7. Sanger F, Air G, Barrell B, Brown N, Coulson A, Fiddes C, et al. Nucleotide sequence of bacteriophage phi X174 DNA. Nature. 1977;265:687-95 pubmed
    ..Two pairs of genes are coded by the same region of DNA using different reading frames...
  8. Brown N, Smith M. DNA sequence of a region of the phi X174 genome coding for a ribosome binding site. Nature. 1977;265:695-8 pubmed
    ..Assignments of the binding site to a specific gene are discussed, and the possibility of a second case of overlapping genes in phi X174 is considered. ..
  9. Takeshita M, Kappen L, Grollman A, Eisenberg M, Goldberg I. Strand scission of deoxyribonucleic acid by neocarzinostatin, auromomycin, and bleomycin: studies on base release and nucleotide sequence specificity. Biochemistry. 1981;20:7599-606 pubmed
    ..The cleavage pattern of Tlm shows quantitative differences from the other analogues tested. Differences between bleomycin and its analogues may be related to structural differences in these molecules. ..
  10. Blackburn E. Transcription and sequence analysis of a fragment of bacteriophage phiX174 DNA. J Mol Biol. 1976;107:417-31 pubmed
  11. Langeveld S, van Mansfeld A, de Winter J, Weisbeek P. Cleavage of single-stranded DNA by the A and A* proteins of bacteriophage phi X174. Nucleic Acids Res. 1979;7:2177-88 pubmed
    ..000 daltons) can cleave the single-stranded viral DNA at many different sites. It has however a strong preference for the origin of replication. Both proteins generate 3'OH ends and blocked 5' termini at the nick site. ..
  12. Air G, Blackburn E, Sanger F, Coulson A. The nucleotide and amino acid sequences of the N (5') terminal region of gene G of bacteriophage phiphiX 174. J Mol Biol. 1975;96:703-19 pubmed
  13. Ziff E, Sedat J, Galibert F. Determination of the nucleotide sequence of a fragment of bacteriophage phiX 174 DNA. Nat New Biol. 1973;241:34-7 pubmed
  14. Air G, Coulson A, Fiddes J, Friedmann T, Hutchison C, Sanger F, et al. Nucleotide sequence of the F protein coding region of bacteriophage phiX174 and the amino acid sequence of its product. J Mol Biol. 1978;125:247-54 pubmed