Christian M Zmasek

Summary

Publications

  1. ncbi request reprint Phylogenomic analysis of glycogen branching and debranching enzymatic duo
    Christian M Zmasek
    Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N, Torrey Pines Road, La Jolla 92037, CA, USA
    BMC Evol Biol 14:183. 2014
  2. pmc Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase
    Anna Sheydina
    Joint Center for Structural Genomics, 10550 North Torrey Pines Road, BCC 206, La Jolla, California 92037, USA
    BMC Bioinformatics 15:112. 2014
  3. pmc Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
    Christian M Zmasek
    Program in Bioinformatics and Systems Biology, Sanford Burnham Medical Research Institute, La Jolla, CA 92037, USA
    Genome Biol 12:R4. 2011
  4. pmc This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes
    Christian M Zmasek
    Program in Bioinformatics and Systems Biology, Sanford Burnham Medical Research Institute, La Jolla, CA, USA
    PLoS Comput Biol 8:e1002701. 2012
  5. pmc Novel genes dramatically alter regulatory network topology in amphioxus
    Qing Zhang
    Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA 92037, USA
    Genome Biol 9:R123. 2008
  6. pmc Domain architecture evolution of pattern-recognition receptors
    Qing Zhang
    Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
    Immunogenetics 62:263-72. 2010
  7. pmc Evolution of the animal apoptosis network
    Christian M Zmasek
    Program on Bioinformatics and Systems Biology, Sanford Burnham Medical Research Institute, La Jolla, California 92037, USA
    Cold Spring Harb Perspect Biol 5:a008649. 2013
  8. pmc TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog
    Qing Zhang
    Sanford Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
    Dev Comp Immunol 35:461-8. 2011
  9. pmc Divergent evolution of protein conformational dynamics in dihydrofolate reductase
    Gira Bhabha
    1 Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California, USA 2 Skaggs Institute for Chemical Biology, Scripps Research Institute, La Jolla, California, USA 3
    Nat Struct Mol Biol 20:1243-9. 2013
  10. pmc TOPSAN: a dynamic web database for structural genomics
    Kyle Ellrott
    Joint Center for Structural Genomics, Bioinformatics Core, Sanford Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
    Nucleic Acids Res 39:D494-6. 2011

Detail Information

Publications14

  1. ncbi request reprint Phylogenomic analysis of glycogen branching and debranching enzymatic duo
    Christian M Zmasek
    Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, 10901 N, Torrey Pines Road, La Jolla 92037, CA, USA
    BMC Evol Biol 14:183. 2014
    ....
  2. pmc Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase
    Anna Sheydina
    Joint Center for Structural Genomics, 10550 North Torrey Pines Road, BCC 206, La Jolla, California 92037, USA
    BMC Bioinformatics 15:112. 2014
    ..Initial analysis of the archetypal Bacteroides thetaiotaomicron genome identified 172 glycosyl hydrolases and a large number of uncharacterized proteins associated with polysaccharide metabolism...
  3. pmc Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
    Christian M Zmasek
    Program in Bioinformatics and Systems Biology, Sanford Burnham Medical Research Institute, La Jolla, CA 92037, USA
    Genome Biol 12:R4. 2011
    ..Underlying trends in the evolution of the functional content and capabilities of different eukaryotic genomes might be hidden by simultaneous gains and losses of genes...
  4. pmc This Déjà vu feeling--analysis of multidomain protein evolution in eukaryotic genomes
    Christian M Zmasek
    Program in Bioinformatics and Systems Biology, Sanford Burnham Medical Research Institute, La Jolla, CA, USA
    PLoS Comput Biol 8:e1002701. 2012
    ....
  5. pmc Novel genes dramatically alter regulatory network topology in amphioxus
    Qing Zhang
    Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA 92037, USA
    Genome Biol 9:R123. 2008
    ....
  6. pmc Domain architecture evolution of pattern-recognition receptors
    Qing Zhang
    Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
    Immunogenetics 62:263-72. 2010
    ....
  7. pmc Evolution of the animal apoptosis network
    Christian M Zmasek
    Program on Bioinformatics and Systems Biology, Sanford Burnham Medical Research Institute, La Jolla, California 92037, USA
    Cold Spring Harb Perspect Biol 5:a008649. 2013
    ....
  8. pmc TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog
    Qing Zhang
    Sanford Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
    Dev Comp Immunol 35:461-8. 2011
    ....
  9. pmc Divergent evolution of protein conformational dynamics in dihydrofolate reductase
    Gira Bhabha
    1 Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California, USA 2 Skaggs Institute for Chemical Biology, Scripps Research Institute, La Jolla, California, USA 3
    Nat Struct Mol Biol 20:1243-9. 2013
    ....
  10. pmc TOPSAN: a dynamic web database for structural genomics
    Kyle Ellrott
    Joint Center for Structural Genomics, Bioinformatics Core, Sanford Burnham Medical Research Institute, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
    Nucleic Acids Res 39:D494-6. 2011
    ..TOPSAN can be found at http://www.topsan.org...
  11. pmc The amphioxus genome illuminates vertebrate origins and cephalochordate biology
    Linda Z Holland
    Marine Biology Research Division, Scripps Institution of Oceanography, La Jolla, California 92093 0202, USA
    Genome Res 18:1100-11. 2008
    ..Our results indicate that the amphioxus genome is elemental to an understanding of the biology and evolution of nonchordate deuterostomes, invertebrate chordates, and vertebrates...
  12. ncbi request reprint Evolution of the human ion channel set
    Timothy J Jegla
    The Scripps Research Institute, La Jolla, CA 92037, USA
    Comb Chem High Throughput Screen 12:2-23. 2009
    ..Furthermore, genome-wide patterns of sequence conservation can now be used to refine strategies for the identification of gene-specific channel probes...
  13. pmc A mighty small heart: the cardiac proteome of adult Drosophila melanogaster
    Anthony Cammarato
    Development and Aging Program, NASCR Center, Sanford Burnham Medical Research Institute, La Jolla, California, United States of America
    PLoS ONE 6:e18497. 2011
    ....
  14. pmc Surprising complexity of the ancestral apoptosis network
    Christian M Zmasek
    Burnham Institute for Medical Research, North Torrey Pines Road, La Jolla, CA 92037, USA
    Genome Biol 8:R226. 2007
    ....