Jiqiang Yao

Summary

Publications

  1. pmc Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    Harshavardhan Doddapaneni
    University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA
    BMC Genomics 7:225. 2006
  2. ncbi request reprint nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms
    Jiqiang Yao
    Citrus Research Board, 323 W Oak, P O Box 230, Visalia, CA 93279, USA
    In Silico Biol 7:195-200. 2007
  3. pmc PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
  4. ncbi request reprint Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
  5. ncbi request reprint The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
    Christina A Cuomo
    Broad Institute of the Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142, USA
    Science 317:1400-2. 2007
  6. pmc VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008

Collaborators

  • Hong Lin
  • Harshavardhan Doddapaneni
  • Allen Van Deynze
  • Igor V Tetko
  • H Quesneville
  • Christina A Cuomo
  • Rubella S Goswami
  • Kye Yong Seong
  • Scott Kroken
  • Sarah Calvo
  • H Corby Kistler
  • Martin Munsterkotter
  • Thomas Baldwin
  • Weihong Qi
  • Li Jun Ma
  • Thérèse Ouellet
  • Bruce W Birren
  • Cees Waalwijk
  • Gary Muehlbauer
  • David Nelson
  • Ulrich Guldener
  • Martijn Rep
  • Gerhard Adam
  • Rudolf Mitterbauer
  • Liane R Gale
  • Kim Hammond-Kosack
  • Evan Mauceli
  • Linda J Harris
  • Scott E Baker
  • Jon K Magnuson
  • David DeCaprio
  • M Isabel G Roncero
  • Gertrud Mannhaupt
  • Todd J Ward
  • B Gillian Turgeon
  • Antonio Di Pietro
  • Kerry O'Donnell
  • Hans Werner Mewes
  • Yueh Long Chang
  • John Antoniw
  • Sante Gnerre
  • Martin Urban
  • Frances Trail
  • Karen Hilburn
  • Jonathan D Walton
  • John C Kennell
  • Jin Rong Xu

Detail Information

Publications6

  1. pmc Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa
    Harshavardhan Doddapaneni
    University of California Davis, Department of Viticulture and Enology, Davis, CA 95616, USA
    BMC Genomics 7:225. 2006
    ..With the availability of genome sequence information for four strains, it is now possible to perform genome-wide analyses to identify and categorize such DNA variations and to understand their influence on strain functional divergence...
  2. ncbi request reprint nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms
    Jiqiang Yao
    Citrus Research Board, 323 W Oak, P O Box 230, Visalia, CA 93279, USA
    In Silico Biol 7:195-200. 2007
    ..The nWayComp package provides users with a quick and convenient tool to compare genomic sequences among multiple organisms at the whole-genome level...
  3. pmc PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
    Jiqiang Yao
    Citrus Research Board, 323 W Oak Street, Visalia, CA 93291, USA
    BMC Microbiol 8:185. 2008
    ..PrimerSNP attempts to identify reliable strain-specific markers, on which specific primers are designed for pathogen detection purpose...
  4. ncbi request reprint Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method
    Hong Lin
    USDA ARS, San Joaquin Valley Agricultural Science Center, Parlier, CA 93648, USA
    Mol Cell Probes 22:30-7. 2008
    ....
  5. ncbi request reprint The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization
    Christina A Cuomo
    Broad Institute of the Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142, USA
    Science 317:1400-2. 2007
    ..These regions of genome innovation may result from selection due to interactions of F. graminearum with its plant hosts...
  6. pmc VitisExpDB: a database resource for grape functional genomics
    Harshavardhan Doddapaneni
    USDA ARS, San Joaquin Valley Agricultural Science Center, 9611 So Riverbend Ave, Parlier, CA 93648, USA
    BMC Plant Biol 8:23. 2008
    ..Our goal is to develop a comprehensive web data source for Vitaceae...