Xiao Yang

Summary

Publications

  1. pmc ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
    Chang Liu
    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA
    Nucleic Acids Res 41:e142. 2013
  2. pmc V-Phaser 2: variant inference for viral populations
    Xiao Yang
    Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142 USA
    BMC Genomics 14:674. 2013
  3. doi request reprint Large-scale metagenomic sequence clustering on map-reduce clusters
    Xiao Yang
    Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
    J Bioinform Comput Biol 11:1340001. 2013
  4. doi request reprint A survey of error-correction methods for next-generation sequencing
    Xiao Yang
    The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
    Brief Bioinform 14:56-66. 2013
  5. pmc De novo assembly of highly diverse viral populations
    Xiao Yang
    The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    BMC Genomics 13:475. 2012
  6. pmc Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
    Christine M Malboeuf
    Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    Nucleic Acids Res 41:e13. 2013

Collaborators

Detail Information

Publications6

  1. pmc ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
    Chang Liu
    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA
    Nucleic Acids Res 41:e142. 2013
    ..This novel approach should be broadly applicable to research and clinical laboratories. ..
  2. pmc V-Phaser 2: variant inference for viral populations
    Xiao Yang
    Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142 USA
    BMC Genomics 14:674. 2013
    ..However, differentiation of true low frequency variants from sequencing errors remains challenging...
  3. doi request reprint Large-scale metagenomic sequence clustering on map-reduce clusters
    Xiao Yang
    Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
    J Bioinform Comput Biol 11:1340001. 2013
    ..We show that the resulting framework can produce high quality clustering of metagenomic samples consisting of millions of reads, in reasonable time limits, when executed on a modest size cluster...
  4. doi request reprint A survey of error-correction methods for next-generation sequencing
    Xiao Yang
    The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
    Brief Bioinform 14:56-66. 2013
    ..Apart from providing explicit recommendations useful to practitioners, the review serves to identify the current state of the art and promising directions for future research...
  5. pmc De novo assembly of highly diverse viral populations
    Xiao Yang
    The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    BMC Genomics 13:475. 2012
    ....
  6. pmc Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
    Christine M Malboeuf
    Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    Nucleic Acids Res 41:e13. 2013
    ....