Xiao Yang

Summary

Publications

  1. doi request reprint Large-scale metagenomic sequence clustering on map-reduce clusters
    Xiao Yang
    Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
    J Bioinform Comput Biol 11:1340001. 2013
  2. doi request reprint A survey of error-correction methods for next-generation sequencing
    Xiao Yang
    The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
    Brief Bioinform 14:56-66. 2013
  3. pmc De novo assembly of highly diverse viral populations
    Xiao Yang
    The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    BMC Genomics 13:475. 2012
  4. pmc ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
    Chang Liu
    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA, Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA, HLA Laboratory, Barnes Jewish Hospital, St Louis, MO 63110, USA, Department of Surgery, Washington University School of Medicine, St Louis, MO 63110, USA and Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St Louis, MO 63110, USA
    Nucleic Acids Res 41:e142. 2013
  5. pmc Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
    Christine M Malboeuf
    Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    Nucleic Acids Res 41:e13. 2013

Collaborators

Detail Information

Publications5

  1. doi request reprint Large-scale metagenomic sequence clustering on map-reduce clusters
    Xiao Yang
    Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
    J Bioinform Comput Biol 11:1340001. 2013
    ..We show that the resulting framework can produce high quality clustering of metagenomic samples consisting of millions of reads, in reasonable time limits, when executed on a modest size cluster...
  2. doi request reprint A survey of error-correction methods for next-generation sequencing
    Xiao Yang
    The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
    Brief Bioinform 14:56-66. 2013
    ..Availability: All error-correction programs used in this article are downloaded from hosting websites. The evaluation tool kit is publicly available at: http://aluru-sun.ece.iastate.edu/doku.php?id=ecr...
  3. pmc De novo assembly of highly diverse viral populations
    Xiao Yang
    The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    BMC Genomics 13:475. 2012
    ....
  4. pmc ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
    Chang Liu
    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA, Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA, HLA Laboratory, Barnes Jewish Hospital, St Louis, MO 63110, USA, Department of Surgery, Washington University School of Medicine, St Louis, MO 63110, USA and Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St Louis, MO 63110, USA
    Nucleic Acids Res 41:e142. 2013
    ..This novel approach should be broadly applicable to research and clinical laboratories. ..
  5. pmc Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
    Christine M Malboeuf
    Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    Nucleic Acids Res 41:e13. 2013
    ....