Xiao Yang

Summary

Publications

  1. pmc ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
    Chang Liu
    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA
    Nucleic Acids Res 41:e142. 2013
  2. ncbi request reprint V-Phaser 2: variant inference for viral populations
    Xiao Yang
    Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142 USA
    BMC Genomics 14:674. 2013
  3. ncbi request reprint Large-scale metagenomic sequence clustering on map-reduce clusters
    Xiao Yang
    Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
    J Bioinform Comput Biol 11:1340001. 2013
  4. doi request reprint A survey of error-correction methods for next-generation sequencing
    Xiao Yang
    The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
    Brief Bioinform 14:56-66. 2013
  5. pmc De novo assembly of highly diverse viral populations
    Xiao Yang
    The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    BMC Genomics 13:475. 2012
  6. pmc Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
    Christine M Malboeuf
    Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    Nucleic Acids Res 41:e13. 2013

Collaborators

Detail Information

Publications6

  1. pmc ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
    Chang Liu
    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, MO 63110, USA
    Nucleic Acids Res 41:e142. 2013
    ..This novel approach should be broadly applicable to research and clinical laboratories. ..
  2. ncbi request reprint V-Phaser 2: variant inference for viral populations
    Xiao Yang
    Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142 USA
    BMC Genomics 14:674. 2013
    ..However, differentiation of true low frequency variants from sequencing errors remains challenging...
  3. ncbi request reprint Large-scale metagenomic sequence clustering on map-reduce clusters
    Xiao Yang
    Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA
    J Bioinform Comput Biol 11:1340001. 2013
    ..We show that the resulting framework can produce high quality clustering of metagenomic samples consisting of millions of reads, in reasonable time limits, when executed on a modest size cluster...
  4. doi request reprint A survey of error-correction methods for next-generation sequencing
    Xiao Yang
    The Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA
    Brief Bioinform 14:56-66. 2013
    ..Availability: All error-correction programs used in this article are downloaded from hosting websites. The evaluation tool kit is publicly available at: http://aluru-sun.ece.iastate.edu/doku.php?id=ecr...
  5. pmc De novo assembly of highly diverse viral populations
    Xiao Yang
    The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    BMC Genomics 13:475. 2012
    ....
  6. pmc Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
    Christine M Malboeuf
    Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
    Nucleic Acids Res 41:e13. 2013
    ....