Linda Wegley

Summary

Publications

  1. ncbi request reprint Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
    Linda W Kelly
    Department of Biology, San Diego State University, San Diego, CA 92182
    Proc Natl Acad Sci U S A 111:10227-32. 2014
  2. pmc Black reefs: iron-induced phase shifts on coral reefs
    Linda Wegley Kelly
    Department of Biology, San Diego State University, San Diego, CA 92182, USA
    ISME J 6:638-49. 2012
  3. ncbi request reprint Rapid estimation of microbial numbers in water using bulk fluorescence
    Linda Wegley
    Department of Biology, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA
    Environ Microbiol 8:1775-82. 2006
  4. ncbi request reprint Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    Linda Wegley
    Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA 92182 4614, USA
    Environ Microbiol 9:2707-19. 2007
  5. doi request reprint Functional metagenomic profiling of nine biomes
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nature 452:629-32. 2008
  6. doi request reprint Viral and microbial community dynamics in four aquatic environments
    Beltran Rodriguez-Brito
    Computational Science Research Center, San Diego State University, San Diego, CA 92182 1245, USA
    ISME J 4:739-51. 2010
  7. doi request reprint Biodiversity and biogeography of phages in modern stromatolites and thrombolites
    Christelle Desnues
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nature 452:340-3. 2008
  8. pmc Microbial ecology of four coral atolls in the Northern Line Islands
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California, USA
    PLoS ONE 3:e1584. 2008
  9. pmc Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa
    Rebecca L Vega Thurber
    Department of Biology, Computational Sciences Research Center, and Center for Microbial Sciences, San Diego State University, San Diego, CA 92182, USA
    Proc Natl Acad Sci U S A 105:18413-8. 2008
  10. pmc Using pyrosequencing to shed light on deep mine microbial ecology
    Robert A Edwards
    Department of Biology, San Diego State University, San Diego, USA
    BMC Genomics 7:57. 2006

Detail Information

Publications16

  1. ncbi request reprint Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors
    Linda W Kelly
    Department of Biology, San Diego State University, San Diego, CA 92182
    Proc Natl Acad Sci U S A 111:10227-32. 2014
    ..These results support the hypothesis that core microbiomes are determined by holobiont macroorganisms, and that those core taxa adapt to local conditions by selecting for advantageous metabolic genes. ..
  2. pmc Black reefs: iron-induced phase shifts on coral reefs
    Linda Wegley Kelly
    Department of Biology, San Diego State University, San Diego, CA 92182, USA
    ISME J 6:638-49. 2012
    ..Together these results demonstrate that shipwrecks and their associated iron pose significant threats to coral reefs in iron-limited regions...
  3. ncbi request reprint Rapid estimation of microbial numbers in water using bulk fluorescence
    Linda Wegley
    Department of Biology, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA
    Environ Microbiol 8:1775-82. 2006
    ..Treatment with DNase I increased sensitivity by lowering background noise attributed to free DNA. This technique is simple, rapid, inexpensive and adaptable for automatically estimating microbial numbers in water samples...
  4. ncbi request reprint Metagenomic analysis of the microbial community associated with the coral Porites astreoides
    Linda Wegley
    Department of Biology, San Diego State University, 5500 Campanile Dr, San Diego, CA 92182 4614, USA
    Environ Microbiol 9:2707-19. 2007
    ....
  5. doi request reprint Functional metagenomic profiling of nine biomes
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nature 452:629-32. 2008
    ....
  6. doi request reprint Viral and microbial community dynamics in four aquatic environments
    Beltran Rodriguez-Brito
    Computational Science Research Center, San Diego State University, San Diego, CA 92182 1245, USA
    ISME J 4:739-51. 2010
    ..Microbial taxa, viral taxa, and metabolic function persist over time in stable ecosystems and both communities fluctuate in a Kill-the-Winner manner at the level of viral genotypes and microbial strains...
  7. doi request reprint Biodiversity and biogeography of phages in modern stromatolites and thrombolites
    Christelle Desnues
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nature 452:340-3. 2008
    ..Taken together, these results prove that viruses in modern microbialites display biogeographical variability and suggest that they may be derived from an ancient community...
  8. pmc Microbial ecology of four coral atolls in the Northern Line Islands
    Elizabeth A Dinsdale
    Department of Biology, San Diego State University, San Diego, California, USA
    PLoS ONE 3:e1584. 2008
    ..Obtaining the microbial data set, from atolls is particularly important given the association of microbes in the ongoing degradation of coral reef ecosystems worldwide...
  9. pmc Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa
    Rebecca L Vega Thurber
    Department of Biology, Computational Sciences Research Center, and Center for Microbial Sciences, San Diego State University, San Diego, CA 92182, USA
    Proc Natl Acad Sci U S A 105:18413-8. 2008
    ..These data support the hypotheses that corals experience viral infections, which are exacerbated by stress, and that herpes-like viruses are common in Cnidarians...
  10. pmc Using pyrosequencing to shed light on deep mine microbial ecology
    Robert A Edwards
    Department of Biology, San Diego State University, San Diego, USA
    BMC Genomics 7:57. 2006
    ..These sites were adjacent to each other, but differed significantly in chemistry and hydrogeology...
  11. doi request reprint Laboratory procedures to generate viral metagenomes
    Rebecca V Thurber
    Department of Biology, San Diego State University, San Diego, California 92182, USA
    Nat Protoc 4:470-83. 2009
    ..Overall, a sample can be processed to isolate viral nucleic acids suitable for high-throughput sequencing in approximately 1 week...
  12. pmc The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes
    Florent E Angly
    Biology Department, San Diego State University, San Diego, California, United States of America
    PLoS Comput Biol 5:e1000593. 2009
    ....
  13. pmc Phage community dynamics in hot springs
    Mya Breitbart
    Department of Biology, San Diego State University, San Diego, California 92182 4614, USA
    Appl Environ Microbiol 70:1633-40. 2004
    ..Together, these results show that phages exert an important influence on microbial community structure and energy flow in extreme thermal environments...
  14. pmc Movement of viruses between biomes
    Emiko Sano
    Center for Microbial Sciences, San Diego State University, 5500 Campanile Dr, San Diego, CA 92182, USA
    Appl Environ Microbiol 70:5842-6. 2004
    ..These results imply that viruses can laterally transfer DNA between microbes in different biomes...
  15. ncbi request reprint Widespread association of a Rickettsiales-like bacterium with reef-building corals
    Veronica Casas
    San Diego State University, Department of Biology, LS301, 5500 Campanile Drive, San Diego, CA 92182 4614, USA
    Environ Microbiol 6:1137-48. 2004
    ..These results suggest CAR1 is a relatively new bacterial associate of Acroporids and that a non-bacterial pathogen might be the cause of WBD I...
  16. pmc Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals
    J Michael Beman
    Department of Geological and Environmental Sciences, Building 320 Room 118, Stanford University, Stanford, CA 94305 2115, USA
    Appl Environ Microbiol 73:5642-7. 2007
    ..In contrast, the bacterial amoA gene could not be amplified from any of these samples. These results offer further evidence for the widespread presence of the archaeal amoA gene in marine ecosystems, including coral reefs...