Jay Vyas

Summary

Publications

  1. pmc MimoSA: a system for minimotif annotation
    Jay Vyas
    Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave Farmington, CT 06030 3305, USA
    BMC Bioinformatics 11:328. 2010
  2. pmc SciReader enables reading of medical content with instantaneous definitions
    Patrick R Gradie
    School of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV 89154 4004, USA
    BMC Med Inform Decis Mak 11:4. 2011
  3. pmc A proposed syntax for Minimotif Semantics, version 1
    Jay Vyas
    Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030 3305 USA
    BMC Genomics 10:360. 2009
  4. pmc CONNJUR spectrum translator: an open source application for reformatting NMR spectral data
    Ronald J Nowling
    Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030, USA
    J Biomol NMR 50:83-9. 2011
  5. pmc VENN, a tool for titrating sequence conservation onto protein structures
    Jay Vyas
    Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030 3305, USA
    Nucleic Acids Res 37:e124. 2009
  6. pmc Viral infection and human disease--insights from minimotifs
    Krishna Kadaveru
    University of Connecticut Health Center, Department of Molecular, Microbial, and Structural Biology, Biological Systems Modeling Group, 263 Farmington Ave, Farmington, CT, 06030 3305, USA
    Front Biosci 13:6455-71. 2008
  7. pmc Extremely variable conservation of γ-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales
    Jay Vyas
    Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030 3305, USA
    J Bacteriol 193:1884-92. 2011

Collaborators

Detail Information

Publications7

  1. pmc MimoSA: a system for minimotif annotation
    Jay Vyas
    Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, 263 Farmington Ave Farmington, CT 06030 3305, USA
    BMC Bioinformatics 11:328. 2010
    ..Our recently proposed function and sequence syntax for minimotifs enables us to build a general tool that will facilitate structured annotation and management of minimotif data from the biomedical literature...
  2. pmc SciReader enables reading of medical content with instantaneous definitions
    Patrick R Gradie
    School of Life Sciences, University of Nevada, Las Vegas, 4505 Maryland Pkwy, Las Vegas, NV 89154 4004, USA
    BMC Med Inform Decis Mak 11:4. 2011
    ..Currently, searching for medical definitions from an external source is time consuming, distracting, and negatively impacts reading comprehension and memory of the material...
  3. pmc A proposed syntax for Minimotif Semantics, version 1
    Jay Vyas
    Department of Molecular, Microbial, and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030 3305 USA
    BMC Genomics 10:360. 2009
    ..With these two purposes in mind, the authors provide a proposed syntax for minimotif semantics primarily useful for functional annotation...
  4. pmc CONNJUR spectrum translator: an open source application for reformatting NMR spectral data
    Ronald J Nowling
    Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030, USA
    J Biomol NMR 50:83-9. 2011
    ..For the end user, sophisticated metadata readers allow conversion of the majority of files with minimum user configuration. The open source code is freely available at http://connjur.sourceforge.net for inspection and extension...
  5. pmc VENN, a tool for titrating sequence conservation onto protein structures
    Jay Vyas
    Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030 3305, USA
    Nucleic Acids Res 37:e124. 2009
    ..Analyses of a bZIP transcription factor and receptor recognition of Fibroblast Growth Factor using VENN revealed key specificity determinants. Weblink: http://sbtools.uchc.edu/venn/...
  6. pmc Viral infection and human disease--insights from minimotifs
    Krishna Kadaveru
    University of Connecticut Health Center, Department of Molecular, Microbial, and Structural Biology, Biological Systems Modeling Group, 263 Farmington Ave, Farmington, CT, 06030 3305, USA
    Front Biosci 13:6455-71. 2008
    ..This system architecture allows viruses to exploit a motif, whereas the viability of the host is not affected by mutation of a single motif...
  7. pmc Extremely variable conservation of γ-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales
    Jay Vyas
    Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030 3305, USA
    J Bacteriol 193:1884-92. 2011
    ..acidocaldarius spores, although several of the DNA-binding α/β-type SASP were present. These findings have elucidated the phylogenetic origin of the sspE gene, and this may help in determining the precise function of γ-type SASP...