Jean Baptiste Veyrieras

Summary

Publications

  1. pmc Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data
    Jean Baptiste Veyrieras
    Department of Human Genetics, The University of Chicago, Chicago, Illinois, United States of America
    PLoS ONE 7:e30629. 2012
  2. pmc Construction of a potato consensus map and QTL meta-analysis offer new insights into the genetic architecture of late blight resistance and plant maturity traits
    Sarah Danan
    Institut National de la Recherche Agronomique, UR 1052 Génétique et Amélioration des Fruits et Légumes, BP94, 84140 Montfavet, France
    BMC Plant Biol 11:16. 2011
  3. pmc High-resolution mapping of expression-QTLs yields insight into human gene regulation
    Jean Baptiste Veyrieras
    Department of Human Genetics, The University of Chicago, Chicago, IL, USA
    PLoS Genet 4:e1000214. 2008
  4. pmc The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels
    Athma A Pai
    Department of Human Genetics, University of Chicago, Chicago, Illinois, USA
    PLoS Genet 8:e1003000. 2012
  5. pmc Dissecting the regulatory architecture of gene expression QTLs
    Daniel J Gaffney
    Department of Human Genetics, University of Chicago, 920 E58th Street, Chicago, IL 60637, USA
    Genome Biol 13:R7. 2012
  6. pmc Understanding mechanisms underlying human gene expression variation with RNA sequencing
    Joseph K Pickrell
    Department of Human Genetics, The University of Chicago, Chicago 60637, USA
    Nature 464:768-72. 2010
  7. pmc DNase I sensitivity QTLs are a major determinant of human expression variation
    Jacob F Degner
    Department of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA
    Nature 482:390-4. 2012
  8. pmc Gene expression levels are a target of recent natural selection in the human genome
    Sridhar Kudaravalli
    Department of Human Genetics, The University of Chicago, USA
    Mol Biol Evol 26:649-58. 2009
  9. pmc Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information
    Sébastien Ducrocq
    UMR de Genetique Vegetale, Institut National de la Recherche Agronomique, Universite Paris Sud, Centre National de la Recherche Scientifique, AgroParisTech, Ferme du Moulon, 91190 Gif sur Yvette, France
    Genetics 178:2433-7. 2008
  10. pmc MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments
    Jean Baptiste Veyrieras
    UMR, INRA UPS XI INAPG CNRS Génétique Végétale, Ferme du Moulon, 91190 Gif sur Yvette, France
    BMC Bioinformatics 8:49. 2007

Collaborators

Detail Information

Publications11

  1. pmc Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data
    Jean Baptiste Veyrieras
    Department of Human Genetics, The University of Chicago, Chicago, Illinois, United States of America
    PLoS ONE 7:e30629. 2012
    ..Nonetheless, we do observe an overall enrichment of eQTLs in exons versus introns in all three data sets, consistent with an important role for exonic sequences in gene regulation...
  2. pmc Construction of a potato consensus map and QTL meta-analysis offer new insights into the genetic architecture of late blight resistance and plant maturity traits
    Sarah Danan
    Institut National de la Recherche Agronomique, UR 1052 Génétique et Amélioration des Fruits et Légumes, BP94, 84140 Montfavet, France
    BMC Plant Biol 11:16. 2011
    ..Moreover, late blight resistance was often associated with plant maturity. To get insight into the genomic organization of late blight resistance loci as compared to maturity QTLs, a QTL meta-analysis was performed for both traits...
  3. pmc High-resolution mapping of expression-QTLs yields insight into human gene regulation
    Jean Baptiste Veyrieras
    Department of Human Genetics, The University of Chicago, Chicago, IL, USA
    PLoS Genet 4:e1000214. 2008
    ..Our results suggest an important role for mRNA stability in determining steady-state mRNA levels, and highlight the potential of eQTL mapping as a high-resolution tool for studying the determinants of gene regulation...
  4. pmc The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels
    Athma A Pai
    Department of Human Genetics, University of Chicago, Chicago, Illinois, USA
    PLoS Genet 8:e1003000. 2012
    ..By analyzing our data within the context of known steady-state eQTLs, we estimate that a substantial fraction of eQTLs are associated with inter-individual variation in mRNA decay rates...
  5. pmc Dissecting the regulatory architecture of gene expression QTLs
    Daniel J Gaffney
    Department of Human Genetics, University of Chicago, 920 E58th Street, Chicago, IL 60637, USA
    Genome Biol 13:R7. 2012
    ..Using the HapMap lymphoblastoid cell lines, we combine 1000 Genomes genotypes and an extensive catalogue of human functional elements to investigate the biological mechanisms that eQTLs perturb...
  6. pmc Understanding mechanisms underlying human gene expression variation with RNA sequencing
    Joseph K Pickrell
    Department of Human Genetics, The University of Chicago, Chicago 60637, USA
    Nature 464:768-72. 2010
    ..Our results illustrate the power of high-throughput sequencing for the joint analysis of variation in transcription, splicing and allele-specific expression across individuals...
  7. pmc DNase I sensitivity QTLs are a major determinant of human expression variation
    Jacob F Degner
    Department of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA
    Nature 482:390-4. 2012
    ..Our observations indicate that dsQTLs are highly abundant in the human genome and are likely to be important contributors to phenotypic variation...
  8. pmc Gene expression levels are a target of recent natural selection in the human genome
    Sridhar Kudaravalli
    Department of Human Genetics, The University of Chicago, USA
    Mol Biol Evol 26:649-58. 2009
    ....
  9. pmc Key impact of Vgt1 on flowering time adaptation in maize: evidence from association mapping and ecogeographical information
    Sébastien Ducrocq
    UMR de Genetique Vegetale, Institut National de la Recherche Agronomique, Universite Paris Sud, Centre National de la Recherche Scientifique, AgroParisTech, Ferme du Moulon, 91190 Gif sur Yvette, France
    Genetics 178:2433-7. 2008
    ..Analysis of allele frequencies in a landrace collection supports a key role of Vgt1 in maize altilatitudinal adaptation...
  10. pmc MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments
    Jean Baptiste Veyrieras
    UMR, INRA UPS XI INAPG CNRS Génétique Végétale, Ferme du Moulon, 91190 Gif sur Yvette, France
    BMC Bioinformatics 8:49. 2007
    ..Presently, the few computational and statistical frameworks to do so are mainly based on empirical methods (e.g. consensus genetic maps are generally built by iterative projection)...
  11. pmc GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics
    Delphine Samson
    Génoplante Info, Unité de Recherche Génomique Info, INRA, Infobiogen, 523 Place des Terrasses, F 91000 Evry, France
    Nucleic Acids Res 31:179-82. 2003
    ..This continuous flood of data and tools is regularly updated and will grow continuously during the coming two years. Access to the GPI databases and tools is available at http://genoplante-info.infobiogen.fr/...