Jorge Valdes

Summary

Publications

  1. pmc Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
    Jorge Valdes
    Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida, Facultad de Ciencias de la Salud, Universidad Andres Bello, Santiago, Chile
    BMC Genomics 9:597. 2008
  2. pmc Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus
    Jorge Valdes
    Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida and Depto de Ciencias Biologicas, Facultad de Ciencias Biologicas, Universidad Andres Bello, Santiago, Chile
    J Bacteriol 191:5877-8. 2009
  3. doi request reprint Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms
    Juan Pablo Cárdenas
    Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida, Avda Zanartu 1482, Santiago, Chile
    Appl Microbiol Biotechnol 88:605-20. 2010
  4. ncbi request reprint Generation and analysis of expressed sequence tags from Botrytis cinerea
    Evelyn Silva
    Fundacíon Ciencia para la Vida and Instituto MIFAB, Santiago, Chile
    Biol Res 39:367-76. 2006
  5. pmc Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus
    Jorge Valdes
    Center for Bioinformatics and Genome Biology, Fundación Ciencia and Vida and Depto de Ciencias Biologicas, Facultad de Ciencias Biologicas, Universidad Andres Bello, Santiago, Chile
    J Bacteriol 193:7003-4. 2011
  6. pmc Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus
    Lillian G Acuña
    Fundación Ciencia and Vida, Santiago, Chile Facultad de Ciencias Biológicas, Universidad Andres Bello, Santiago, Chile
    PLoS ONE 8:e78237. 2013
  7. doi request reprint Preparation and analysis of an expressed sequence tag library from the toxic dinoflagellate Alexandrium catenella
    Paulina Uribe
    Fundación Ciencia para la Vida, Av Zañartu 1482, Nunoa, Santiago, Chile
    Mar Biotechnol (NY) 10:692-700. 2008
  8. pmc Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
    Jorge Valdes
    Laboratory of Bioinformatics and Genome Biology, University of Santiago USACH, Santiago, Chile
    BMC Genomics 4:51. 2003

Collaborators

Detail Information

Publications8

  1. pmc Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
    Jorge Valdes
    Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida, Facultad de Ciencias de la Salud, Universidad Andres Bello, Santiago, Chile
    BMC Genomics 9:597. 2008
    ..Also, confusion has been caused by prior metabolic models constructed based upon the examination of multiple, and sometimes distantly related, strains of the microorganism...
  2. pmc Draft genome sequence of the extremely acidophilic bacterium Acidithiobacillus caldus ATCC 51756 reveals metabolic versatility in the genus Acidithiobacillus
    Jorge Valdes
    Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida and Depto de Ciencias Biologicas, Facultad de Ciencias Biologicas, Universidad Andres Bello, Santiago, Chile
    J Bacteriol 191:5877-8. 2009
    ....
  3. doi request reprint Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms
    Juan Pablo Cárdenas
    Center for Bioinformatics and Genome Biology, Fundación Ciencia para la Vida, Avda Zanartu 1482, Santiago, Chile
    Appl Microbiol Biotechnol 88:605-20. 2010
    ....
  4. ncbi request reprint Generation and analysis of expressed sequence tags from Botrytis cinerea
    Evelyn Silva
    Fundacíon Ciencia para la Vida and Instituto MIFAB, Santiago, Chile
    Biol Res 39:367-76. 2006
    ..Several genes involved in putative and known fungal virulence and general pathogenicity were identified. The results provide important information for future research on this fungal pathogen...
  5. pmc Draft genome sequence of the extremely acidophilic biomining bacterium Acidithiobacillus thiooxidans ATCC 19377 provides insights into the evolution of the Acidithiobacillus genus
    Jorge Valdes
    Center for Bioinformatics and Genome Biology, Fundación Ciencia and Vida and Depto de Ciencias Biologicas, Facultad de Ciencias Biologicas, Universidad Andres Bello, Santiago, Chile
    J Bacteriol 193:7003-4. 2011
    ..Here we present the draft genome sequence of A. thiooxidans ATCC 19377, which has allowed the identification of genes for survival and colonization of extremely acidic environments...
  6. pmc Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus
    Lillian G Acuña
    Fundación Ciencia and Vida, Santiago, Chile Facultad de Ciencias Biológicas, Universidad Andres Bello, Santiago, Chile
    PLoS ONE 8:e78237. 2013
    ..In this study, we explore the genomic diversity of A. caldus strains using a combination of bioinformatic and experimental techniques, thus contributing first insights into the elucidation of the species pangenome...
  7. doi request reprint Preparation and analysis of an expressed sequence tag library from the toxic dinoflagellate Alexandrium catenella
    Paulina Uribe
    Fundación Ciencia para la Vida, Av Zañartu 1482, Nunoa, Santiago, Chile
    Mar Biotechnol (NY) 10:692-700. 2008
    ..The sequences of 9,847 ESTs have been deposited in Gene Bank (accession numbers EX 454357-464203)...
  8. pmc Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
    Jorge Valdes
    Laboratory of Bioinformatics and Genome Biology, University of Santiago USACH, Santiago, Chile
    BMC Genomics 4:51. 2003
    ..Nearly complete genome sequences of A. ferrooxidans are available from two public sources and we have exploited this information to reconstruct aspects of its sulfur metabolism...