Howard Ochman

Summary

Affiliation: Yale University
Country: USA

Publications

  1. pmc Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes
    David Williams
    Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA
    BMC Genomics 14:537. 2013
  2. pmc Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    Howard Ochman
    Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, United States of America
    PLoS Biol 8:e1000546. 2010
  3. pmc Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli
    Rahul Raghavan
    Department of Ecology and Evolutionary Biology, Yale University, P O Box 27388, West Haven, CT 06516 7388, USA
    J Bacteriol 193:2871-4. 2011
  4. pmc Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera
    Patrick H Degnan
    Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America
    PLoS Genet 7:e1002252. 2011
  5. pmc SIV-induced instability of the chimpanzee gut microbiome
    Andrew H Moeller
    Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, USA
    Cell Host Microbe 14:340-5. 2013

Collaborators

  • Michael Worobey
  • Philip Hugenholtz
  • Chih Horng Kuo
  • Andrew H Moeller
  • David Williams
  • Meghan Shilts
  • Patrick H Degnan
  • Rahul Raghavan
  • Folker Meyer
  • Rebecca S Rudicell
  • William L Trimble
  • Yingying Li
  • Elizabeth V Lonsdorf
  • Anne E Pusey
  • Michael L Wilson
  • Beatrice H Hahn
  • Alan Sage
  • Nancy A Moran

Detail Information

Publications5

  1. pmc Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes
    David Williams
    Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06520, USA
    BMC Genomics 14:537. 2013
    ..We demonstrate a simple and rapid means to ascertain the repeat structure and total size of a bacterial or archaeal genome without the need for assembly by directly analyzing the abundances of distinct k-mers among reads...
  2. pmc Evolutionary relationships of wild hominids recapitulated by gut microbial communities
    Howard Ochman
    Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona, United States of America
    PLoS Biol 8:e1000546. 2010
    ....
  3. pmc Genome-wide identification of transcription start sites yields a novel thermosensing RNA and new cyclic AMP receptor protein-regulated genes in Escherichia coli
    Rahul Raghavan
    Department of Ecology and Evolutionary Biology, Yale University, P O Box 27388, West Haven, CT 06516 7388, USA
    J Bacteriol 193:2871-4. 2011
    ....
  4. pmc Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera
    Patrick H Degnan
    Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut, United States of America
    PLoS Genet 7:e1002252. 2011
    ..Although pseudogene formation, and thus IGS formation, are ongoing processes in these genomes, a large proportion of intergenic spacers contain functional sequences...
  5. pmc SIV-induced instability of the chimpanzee gut microbiome
    Andrew H Moeller
    Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, USA
    Cell Host Microbe 14:340-5. 2013
    ..Our results indicate that immune function maintains temporally stable gut communities that are lost when individuals become infected with SIVcpz...