Robert D Bjornson

Summary

Affiliation: Yale University
Country: USA

Publications

  1. pmc A spatial simulation approach to account for protein structure when identifying non-random somatic mutations
    Gregory A Ryslik
    Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA
    BMC Bioinformatics 15:231. 2014
  2. pmc X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers
    Robert D Bjornson
    Yale University, Department of Computer Science, P O Box 208285, New Haven, Connecticut 06520 8285, USA
    J Proteome Res 7:293-9. 2008
  3. pmc YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research
    Christopher M Colangelo
    W M Keck Foundation Biotechnology Resource Laboratory, School of Medicine, Yale University, New Haven, CT 06510, USA Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA Electronic address
    Genomics Proteomics Bioinformatics 13:25-35. 2015
  4. pmc Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants
    Jiang Du
    Department of Computer Science, Yale University, New Haven, Connecticut, USA
    PLoS Comput Biol 5:e1000432. 2009
  5. pmc Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families
    Prianka V Patel
    Department of Molecular Biophysics, Yale University, New Haven, Connecticut 06520, USA
    Genome Res 20:960-71. 2010

Collaborators

Detail Information

Publications5

  1. pmc A spatial simulation approach to account for protein structure when identifying non-random somatic mutations
    Gregory A Ryslik
    Department of Biostatistics, Yale School of Public Health, New Haven, CT, USA
    BMC Bioinformatics 15:231. 2014
    ..Based on the hypothesis that driver mutations tend to cluster in key regions of the protein, the development of cluster identification algorithms has become critical...
  2. pmc X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers
    Robert D Bjornson
    Yale University, Department of Computer Science, P O Box 208285, New Haven, Connecticut 06520 8285, USA
    J Proteome Res 7:293-9. 2008
    ..Furthermore, the parallelization technique used is unusual and potentially useful for parallelizing other complex programs...
  3. pmc YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research
    Christopher M Colangelo
    W M Keck Foundation Biotechnology Resource Laboratory, School of Medicine, Yale University, New Haven, CT 06510, USA Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA Electronic address
    Genomics Proteomics Bioinformatics 13:25-35. 2015
    ..In addition, we have built enhanced functionality to curate peptide identifications into an MS/MS peptide spectral library for all of our protein database search identification results. ..
  4. pmc Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants
    Jiang Du
    Department of Computer Science, Yale University, New Haven, Connecticut, USA
    PLoS Comput Biol 5:e1000432. 2009
    ..Our strategy should facilitate the sequencing of human genomes at maximum accuracy and low cost...
  5. pmc Analysis of membrane proteins in metagenomics: networks of correlated environmental features and protein families
    Prianka V Patel
    Department of Molecular Biophysics, Yale University, New Haven, Connecticut 06520, USA
    Genome Res 20:960-71. 2010
    ....