Li Yang

Summary

Affiliation: Western Michigan University
Country: USA

Publications

  1. ncbi request reprint Distance-preserving projection of high-dimensional data for nonlinear dimensionality reduction
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo, MI 49008, USA
    IEEE Trans Pattern Anal Mach Intell 26:1243-6. 2004
  2. ncbi request reprint Building k edge-disjoint spanning trees of minimum total length for isometric data embedding
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo, MI 49008 5466, USA
    IEEE Trans Pattern Anal Mach Intell 27:1680-3. 2005
  3. ncbi request reprint Building k-connected neighborhood graphs for isometric data embedding
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo 49008, USA
    IEEE Trans Pattern Anal Mach Intell 28:827-31. 2006
  4. doi request reprint Alignment of overlapping locally scaled patches for multidimensional scaling and dimensionality reduction
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo, MI 49008 5466, USA
    IEEE Trans Pattern Anal Mach Intell 30:438-50. 2008
  5. doi request reprint Genotypic characterization of Neisseria meningitidis serogroup B strains circulating in China
    Li Yang
    College of Life Sciences, Wuhan University, Wuhan, China
    J Infect 56:211-8. 2008
  6. doi request reprint Granular parakeratosis of eccrine ostia
    Lei Wang
    Department of Dermatology, Xijing Hospital, The Fourth Military Medical University, Xian, China
    Am J Dermatopathol 30:65-6. 2008
  7. ncbi request reprint Structural parameterization and functional prediction of antigenic polypeptome sequences with biological activity through quantitative sequence-activity models (QSAM) by molecular electronegativity edge-distance vector (VMED)
    Zhiliang Li
    College of Chemistry and Chemical Engineering Key Laboratory for Chemobiomedical Science and Engineering under Chongqing Municipality, Chongqing University, Chongqing 400044, China
    Sci China C Life Sci 50:706-16. 2007
  8. ncbi request reprint Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy
    Brian M Balgley
    Calibrant Biosystems, Gaithersburg, MD 20878, USA
    Mol Cell Proteomics 6:1599-608. 2007
  9. pmc The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination
    Tao Liu
    State Key Lab for Molecular Virology and Genetic Engineering, Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, PR China
    BMC Genomics 8:100. 2007
  10. pmc Munich information center for protein sequences plant genome resources: a framework for integrative and comparative analyses 1(W)
    Heiko Schoof
    Technische Universitat Munchen, Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, D 85354 Freising Weihenstephan, Germany
    Plant Physiol 138:1301-9. 2005

Collaborators

  • Lei Wang
  • Qing Xiong
  • Brian M Balgley
  • Tao Song
  • Heiko Schoof
  • Li Ma
  • Ping Zhou
  • Hui Yuan Wang
  • Tao Liu
  • Zhiliang Li
  • Sheng Yong Yang
  • Zhi Xing Cao
  • Pei Du Jiang
  • Shi Dong Luo
  • Ying Lan Zhao
  • Lin Li Li
  • Yu Quan Wei
  • Ying Xue
  • ZeCong Chen
  • MengJun Zhang
  • Lihong Chen
  • Hu Mei
  • Na Zhao
  • ZiHua Ling
  • Yafang Zhu
  • Lilian Sun
  • Nancy Ye
  • Qi Jin
  • Shushen Liu
  • Jie Dong
  • Wenchuan Leng
  • Lu Yu
  • Weijun Li
  • ShengXi Yang
  • Yuan Zhou
  • Fudong Yu
  • Ziliang Qian
  • Zhe Wan
  • GenRong Li
  • Wenliang Zhang
  • ShiRong Wu
  • Hong Xu
  • Gang Chen
  • Yan Yang
  • Junping Peng
  • ChunYang Liao
  • Ruoyu Li
  • Yan Shen
  • Kang Tu
  • Xingye Xu
  • GuoHui Ding
  • Qian Zhang
  • Jian Yang
  • Yixue Li

Detail Information

Publications12

  1. ncbi request reprint Distance-preserving projection of high-dimensional data for nonlinear dimensionality reduction
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo, MI 49008, USA
    IEEE Trans Pattern Anal Mach Intell 26:1243-6. 2004
    ..The method has no user-selectable parameter. It can successfully project data when the data points are spread among multiple clusters. Results of experiments show its usefulness in projecting high-dimensional data...
  2. ncbi request reprint Building k edge-disjoint spanning trees of minimum total length for isometric data embedding
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo, MI 49008 5466, USA
    IEEE Trans Pattern Anal Mach Intell 27:1680-3. 2005
    ..It works by finding k edge-disjoint spanning trees the sum of whose total lengths is a minimum. Experiments show that it outperforms the nearest neighbor approach for geodesic distance estimation...
  3. ncbi request reprint Building k-connected neighborhood graphs for isometric data embedding
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo 49008, USA
    IEEE Trans Pattern Anal Mach Intell 28:827-31. 2006
    ..This approach is applicable to a wide range of data. Experiments show that it gives better estimation of geodesic distances than other approaches, especially when the data are undersampled or nonuniformly distributed...
  4. doi request reprint Alignment of overlapping locally scaled patches for multidimensional scaling and dimensionality reduction
    Li Yang
    Department of Computer Science, Western Michigan University, Kalamazoo, MI 49008 5466, USA
    IEEE Trans Pattern Anal Mach Intell 30:438-50. 2008
    ..Experiments on both synthetic and real world data sets demonstrate the effectiveness of this method. Extensions and variations of the method are discussed...
  5. doi request reprint Genotypic characterization of Neisseria meningitidis serogroup B strains circulating in China
    Li Yang
    College of Life Sciences, Wuhan University, Wuhan, China
    J Infect 56:211-8. 2008
    ..In China, comparatively little research has been directed at serogroup B meningococci, which are mainly isolated from healthy individuals. We attempted to study the genotypic characterization of Neisseria meningitidis serogroup B strains...
  6. doi request reprint Granular parakeratosis of eccrine ostia
    Lei Wang
    Department of Dermatology, Xijing Hospital, The Fourth Military Medical University, Xian, China
    Am J Dermatopathol 30:65-6. 2008
    ..The follicular involvement in granular parakeratosis has been described. In this report we have presented a case of granular parakeratosis that mainly affected the eccrine ostia...
  7. ncbi request reprint Structural parameterization and functional prediction of antigenic polypeptome sequences with biological activity through quantitative sequence-activity models (QSAM) by molecular electronegativity edge-distance vector (VMED)
    Zhiliang Li
    College of Chemistry and Chemical Engineering Key Laboratory for Chemobiomedical Science and Engineering under Chongqing Municipality, Chongqing University, Chongqing 400044, China
    Sci China C Life Sci 50:706-16. 2007
    ..Finally, a preliminary conclusion was drawn: both classical and modified MED vectors were very useful structural descriptors. Some suggestions were proposed for further studies on QSAR/QSAM of proteins in various fields...
  8. ncbi request reprint Comparative evaluation of tandem MS search algorithms using a target-decoy search strategy
    Brian M Balgley
    Calibrant Biosystems, Gaithersburg, MD 20878, USA
    Mol Cell Proteomics 6:1599-608. 2007
    ..The results showed that some commonly used scoring procedures may lead to excessive false discovery rates. Finally an alternative method for the determination of an optimal cutoff threshold is proposed...
  9. pmc The use of global transcriptional analysis to reveal the biological and cellular events involved in distinct development phases of Trichophyton rubrum conidial germination
    Tao Liu
    State Key Lab for Molecular Virology and Genetic Engineering, Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, PR China
    BMC Genomics 8:100. 2007
    ..Conidia are considered to be the primary cause of infections by Trichophyton rubrum...
  10. pmc Munich information center for protein sequences plant genome resources: a framework for integrative and comparative analyses 1(W)
    Heiko Schoof
    Technische Universitat Munchen, Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, D 85354 Freising Weihenstephan, Germany
    Plant Physiol 138:1301-9. 2005
    ..This allows a consistent view of the model plant genomes for comparative and evolutionary studies, the transfer of knowledge between species, and the integration with functional genomics data...
  11. ncbi request reprint Theory of light propagation incorporating scattering and absorption in turbid media
    Li Yang
    Department of Science and Technology, Linkoping University, S 601 74 Norrköping, Sweden
    Opt Lett 30:792-4. 2005
    ..Experimental results obtained for dyed-paper systems illuminated by diffuse light are demonstrated to be qualitatively and quantitatively reproduced by the theory...
  12. doi request reprint Pharmacophore modeling and virtual screening for designing potential PLK1 inhibitors
    Hui Yuan Wang
    State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, West China Medical School, Sichuan University, Keyuan Road 4, Chengdu, Sichuan 610041, China
    Bioorg Med Chem Lett 18:4972-7. 2008
    ..As far as we know, this is the first report on the pharmacophore modeling even the first publicly reported virtual screening study of PLK1 inhibitors...