Research Topics
Species | D E WildmanSummaryAffiliation: Wayne State University Country: USA Publications
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Detail Information
Publications
Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variationZuogang Peng
School of Biology, Institute of Bioscience and Bioengineering, Institute of Biosystems, Georgia Institute of Technology, Atlanta, GA 30332, USA
BMC Genomics 10:247. 2009..Advances in genomics have the potential to alleviate the shortage of neutral markers. Here we present a method to develop numerous markers from putatively neutral regions of primate genomes...- Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzeesDonna M Toleno
Department of Biochemistry and Molecular Biology, University of Southern California, Los Angeles, CA 90089, USA
BMC Bioinformatics 10:77. 2009..In this process, only data from oligonucleotide probes predicted to have robust hybridization sensitivity and specificity for both transcriptomes are retained for analysis... - Genomics, biogeography, and the diversification of placental mammalsDerek E Wildman
Perinatology Research Branch, National Institute of Child Health and Human Development National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20892, USA
Proc Natl Acad Sci U S A 104:14395-400. 2007..Crown placental mammalian diversification appears to be largely the result of ancient plate tectonic events that allowed time for convergent phenotypes to evolve in the descendant clades... - Sources for comparative studies of placentation. II. Genomic resourcesD E Wildman
Center for Molecular Medicine and Genetics, Wayne State University, Detroit, MI 48201, USA
Placenta 29:144-7. 2008..Additionally, museums, zoos, and commercial entities are available to provide genomic resources to the placental research community. Recommendations for tissue storage conditions of placentas in genomic research are given... - OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequencesGuozhen Liu
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine Detroit, MI 48201, USA
Source Code Biol Med 2:5. 2007..Since this feature is not available in most alignment tools, codon reading frames often must be checked manually before evolutionary analyses can commence... 
A fully resolved genus level phylogeny of neotropical primates (Platyrrhini)Derek E Wildman
Center for Molecular Medicine and Genetics, Wayne State University, School of Medicine, 540 E Canfield Ave, Detroit, MI 48201, USA
Mol Phylogenet Evol 53:694-702. 2009..With a fully resolved platyrrhine phylogeny in place it is now possible to design and test hypotheses regarding the evolution and diversification of platyrrhine phenotypes and life histories...- Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profilesMonica Uddin
Center for Molecular Medicine and Genetics, Department of Anatomy and Cell Biology, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 101:2957-62. 2004.... - Rapid electrostatic evolution at the binding site for cytochrome c on cytochrome c oxidase in anthropoid primatesTimothy R Schmidt
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 102:6379-84. 2005..We suggest that reducing the electrostatic interaction between COX and CYC was part of the adaptive evolution underlying the emergence of anthropoid primates... - Phylogeny of the Ferungulata (Mammalia: Laurasiatheria) as determined from phylogenomic dataZhuo Cheng Hou
Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development NIH DHHS, Detroit, MI 48201, USA
Mol Phylogenet Evol 52:660-4. 2009.... 
Coadaptive evolution in cytochrome c oxidase: 9 of 13 subunits show accelerated rates of nonsynonymous substitution in anthropoid primatesJeffrey W Doan
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
Mol Phylogenet Evol 33:944-50. 2004- A map of the common chimpanzee genomeDerek E Wildman
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, 540 E Canfield Ave, Detroit, MI 48201, USA
Bioessays 24:490-3. 2002..77%) between humans and chimpanzees, while highlighting intriguing areas of potential difference. If we wish to understand the genetic basis of humankind, the completion of the chimpanzee genome deserves high priority... - Molecular evolution of the cytochrome c oxidase subunit 5A gene in primatesMonica Uddin
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit MI 48201, USA
BMC Evol Biol 8:8. 2008..Here, we test the hypothesis that COX5A, the ETC gene that encodes cytochrome c oxidase subunit 5A, shows a pattern of anthropoid-specific adaptive evolution, and investigate the distribution of this protein in catarrhine brains... - Severe preeclampsia is characterized by increased placental expression of galectin-1Nandor Gabor Than
Perinatology Research Branch, NICHD, NIH, DHHS, Detroit, Michigan 48201, USA
J Matern Fetal Neonatal Med 21:429-42. 2008..To test this hypothesis, we studied placental galectin-1 mRNA and protein expression and localization in women with preeclampsia (PE) and in those who delivered a small-for-gestational age (SGA) neonate... - Chorioamnionitis and increased galectin-1 expression in PPROM --an anti-inflammatory response in the fetal membranes?Nandor Gabor Than
Perinatology Research Branch, NICHD NIH DHHS, Wayne State University Hutzel Women s Hospital, 3990 John R, Box 4, Detroit, MI 48201, USA
Am J Reprod Immunol 60:298-311. 2008..Galectin-1 can regulate immune responses upon infection and inflammation. We determined galectin-1 expression in the chorioamniotic membranes and its changes during histological chorioamnionitis... - Emergence of hormonal and redox regulation of galectin-1 in placental mammals: implication in maternal-fetal immune toleranceNandor Gabor Than
Perinatology Research Branch, National Institute of Child Health and Human Development, National Institutes of Health, and Department of Health and Human Services, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 105:15819-24. 2008.... - Phylogenomic analyses reveal convergent patterns of adaptive evolution in elephant and human ancestriesMorris Goodman
Center for Molecular Medicine and Genetics, Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 106:20824-9. 2009.... - Mitochondrial evidence for the origin of hamadryas baboonsDerek E Wildman
Department of Anthropology, New York Univesity, USA
Mol Phylogenet Evol 32:287-96. 2004..The mitochondrial paraphyly of Ethiopian hamadryas and anubis (P. anubis) baboons suggests an extensive and complex history of sex-specific introgression... - Ancient origin of placental expression in the growth hormone genes of anthropoid primatesZack Papper
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 106:17083-8. 2009..e., the roles played by placenta-expressed GHs in human pregnancy may have a longer evolutionary history than previously appreciated)... - Accelerated evolution of the electron transport chain in anthropoid primatesLawrence I Grossman
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
Trends Genet 20:578-85. 2004..Two important questions are: (i) how has evolution altered ETC function? and; (ii) how might functional changes in the ETC be linked to evolution of an expanded neocortical brain?.. - Moving primate genomics beyond the chimpanzee genomeMorris Goodman
Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, Michigan 48201, USA
Trends Genet 21:511-7. 2005..Some of these traits have been discovered recently, particularly in genes encoding proteins that are important for brain function... - Comparative analysis of encephalization in mammals reveals relaxed constraints on anthropoid primate and cetacean brain scalingA M Boddy
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI, USA
J Evol Biol 25:981-94. 2012..We propose both neutral drift and selective factors may have played a role in the evolution of brain-body allometry... - Review: Toward an integrated evolutionary understanding of the mammalian placentaD E Wildman
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
Placenta 32:S142-5. 2011.... - Adaptive evolution of cytochrome c oxidase subunit VIII in anthropoid primatesAllon Goldberg
Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 100:5873-8. 2003..We argue that these changes were linked to the evolution of an expanded neocortex in anthropoid primates... - Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: enlarging genus HomoDerek E Wildman
Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, 540 East Canfield Avenue, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 100:7181-8. 2003.... - The human progesterone receptor shows evidence of adaptive evolution associated with its ability to act as a transcription factorCaoyi Chen
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA
Mol Phylogenet Evol 47:637-49. 2008..Positive selection provides the basis for the hypothesis that changes in structure and function of the progesterone receptor during evolution contribute to the diversity of primate reproductive biology, especially in parturition... - Over-expression of the thrombin receptor (PAR-1) in the placenta in preeclampsia: a mechanism for the intersection of coagulation and inflammationOffer Erez
Perinatology Research Branch, NICHD, NIH, DHHS, Bethesda, Maryland, USA
J Matern Fetal Neonatal Med 21:345-55. 2008..The aim of this study was to determine whether preterm PE is associated with changes in placental expression of PAR-1... - Rapid nonsynonymous evolution of the iron-sulfur protein in anthropoid primatesJeffrey W Doan
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, 540 E Canfield Avenue, Detroit, MI 48201, USA
J Bioenerg Biomembr 37:35-41. 2005..Nevertheless, we find that the catalytically active ISP has an accelerated rate of amino acid replacement in anthropoid primates whereas the catalytically inactive subunit 9 does not... - Evolution of the mammalian placenta revealed by phylogenetic analysisDerek E Wildman
Perinatology Research Branch, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA
Proc Natl Acad Sci U S A 103:3203-8. 2006..The influence of these factors on placental development needs further investigation... - Adaptive history of single copy genes highly expressed in the term human placentaZhuocheng Hou
Perinatology Research Branch, NICHD NIH DHHS Wayne State University, Detroit, MI 48201, USA
Genomics 93:33-41. 2009..Adaptations in genes highly expressed in human placenta are attractive candidates for functional and clinical studies... - Molecular evolution of aerobic energy metabolism in primatesL I Grossman
Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, Michigan 48201, USA
Mol Phylogenet Evol 18:26-36. 2001..Discovering the biochemical adaptations suggested by molecular evolutionary analysis will be an exciting challenge... - Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates)Juan C Opazo
Center for Molecular Medicine and Genetics, School of Medicine, Wayne State University, Detroit, MI 48201, USA
Mol Phylogenet Evol 40:274-80. 2006..Divergence time estimations using both local molecular clock and Bayesian approaches suggest the families diverged from one another over a short period of geological time in the late Oligocene-early Miocene... - Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolutionMonica Uddin
Center for Molecular Medicine and Genetics and Department of Anatomy and Cell Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 105:3215-20. 2008..Comparing adaptively evolving genes from pre- and postnatal-stage tissues suggests that different selective pressures act on the development vs. the maintenance of the human phenotype... - A primate subfamily of galectins expressed at the maternal-fetal interface that promote immune cell deathNandor Gabor Than
Perinatology Research Branch, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Department of Health and Human Services, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 106:9731-6. 2009.... - The phylogenetic history of New World monkey beta globin reveals a platyrrhine beta to delta gene conversion in the atelid ancestryTom Prychitko
Department of Anatomy and Cell Biology, Wayne State University, Detroit, MI, USA
Mol Phylogenet Evol 35:225-34. 2005..This phylogeny generally agreed with results from other nuclear genes. The one exception was that the beta sequences did not place the callitrichine clade within the Cebidae but weakly joined the callitrichine and atelid clades... - Phylogenetic comparisons suggest that distance from the locus control region guides developmental expression of primate beta-type globin genesRobert M Johnson
Department of Biochemistry and Molecular Biology, Wayne State University School of Medicine, Detroit, MI 48201, USA
Proc Natl Acad Sci U S A 103:3186-91. 2006.... - Relationship between maternal and fetal plasma glucose and insulin concentrations during graded maternal hyperglycemic states in primatesJoaquin Santolaya-Forgas
Perinatology Research Branch, NICHD NIH DHHS, Bethesda, Maryland 20892, USA
Am J Perinatol 23:369-75. 2006.... - New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-TranslatePurvesh Khatri
Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, USA
Nucleic Acids Res 34:W626-31. 2006..Currently, Onto-Translate allows arbitrary mappings between 28 types of IDs for 53 organisms. Onto-Tools are freely available at http://vortex.cs.wayne.edu/Projects.html... - Episodic positive selection in ape cytochrome c oxidase subunit IVDerek E Wildman
Mol Biol Evol 19:1812-5. 2002 - Evolution of increased glia-neuron ratios in the human frontal cortexChet C Sherwood
Department of Anthropology, The George Washington University, Washington, DC 20052, USA
Proc Natl Acad Sci U S A 103:13606-11. 2006.... - Functionally important glycosyltransferase gain and loss during catarrhine primate emergenceChihiro Koike
Department of Surgery and Thomas E Starzl Transplantation Institute, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213, USA
Proc Natl Acad Sci U S A 104:559-64. 2007..However, we emphasize that positively selected regulatory changes in sugar chain metabolism might well have contributed in a major way to catarrhine origins...