Gary H Thorgaard

Summary

Affiliation: Washington State University
Country: USA

Publications

  1. pmc Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads
    Matthew C Hale
    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA
    BMC Genomics 12:404. 2011
  2. pmc Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
    Mohamed Salem
    Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
    BMC Genomics 11:564. 2010
  3. pmc A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
  4. ncbi request reprint Status and opportunities for genomics research with rainbow trout
    Gary H Thorgaard
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
    Comp Biochem Physiol B Biochem Mol Biol 133:609-46. 2002
  5. pmc Assignment of rainbow trout linkage groups to specific chromosomes
    Ruth B Phillips
    Department of Biological Sciences, Washington State University, Vancouver, Washington 98686 9600, USA
    Genetics 174:1661-70. 2006
  6. pmc A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammals
    Qianjun Xiao
    Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
    Int J Biol Sci 2:171-8. 2006
  7. pmc Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
    Kris A Christensen
    School of Molecular Biosciences, Washington State University, Pullman WA 99164 4660, USA
    BMC Bioinformatics 14:325. 2013
  8. pmc Genome assembly anchored QTL map of bovine chromosome 14
    Tito A Wibowo
    Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
    Int J Biol Sci 4:406-14. 2008
  9. pmc The genetic basis of smoltification-related traits in Oncorhynchus mykiss
    Krista M Nichols
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164, USA
    Genetics 179:1559-75. 2008
  10. doi request reprint Y chromosome phylogeny for cutthroat trout (Oncorhynchus clarkii) subspecies is generally concordant with those of other markers
    JOSEPH P BRUNELLI
    School of Biological Sciences, Washington State University, Pullman, WA 99164 4236, United States
    Mol Phylogenet Evol 66:592-602. 2013

Collaborators

Detail Information

Publications30

  1. pmc Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads
    Matthew C Hale
    Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA
    BMC Genomics 12:404. 2011
    ..Here we use data from a microarray and qRT-PCR to identify genes differentially expressed between the sexes at three time points in pre-hatch embryos, prior to the known timing of sexual differentiation in this species...
  2. pmc Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
    Mohamed Salem
    Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
    BMC Genomics 11:564. 2010
    ..Although a large number (258,973) of EST sequences are publicly available, the nature of rainbow trout duplicated genome hinders assembly and complicates annotation...
  3. pmc A first generation BAC-based physical map of the rainbow trout genome
    Yniv Palti
    National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
    BMC Genomics 10:462. 2009
    ..This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species...
  4. ncbi request reprint Status and opportunities for genomics research with rainbow trout
    Gary H Thorgaard
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
    Comp Biochem Physiol B Biochem Mol Biol 133:609-46. 2002
    ..The development and analysis of additional genomic sequence data will provide distinctive opportunities to address problems in areas such as evolution of the immune system and duplicate genes...
  5. pmc Assignment of rainbow trout linkage groups to specific chromosomes
    Ruth B Phillips
    Department of Biological Sciences, Washington State University, Vancouver, Washington 98686 9600, USA
    Genetics 174:1661-70. 2006
    ..The set of BACs compiled for this research will be especially useful in construction of genome maps and identification of QTL for important traits in other salmonid fishes...
  6. pmc A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammals
    Qianjun Xiao
    Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
    Int J Biol Sci 2:171-8. 2006
    ..3 standard deviations for the trait in both cases. Our study provides evidence for a new mechanism--the involvement of compound heterosis in extreme obesity, which warrants further examination...
  7. pmc Identification of single nucleotide polymorphisms from the transcriptome of an organism with a whole genome duplication
    Kris A Christensen
    School of Molecular Biosciences, Washington State University, Pullman WA 99164 4660, USA
    BMC Bioinformatics 14:325. 2013
    ..Specifically, single nucleotide polymorphism (SNP) detection is problematic because nucleotide variation can be found between the duplicate copies (paralogs) of a gene as well as between alleles...
  8. pmc Genome assembly anchored QTL map of bovine chromosome 14
    Tito A Wibowo
    Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
    Int J Biol Sci 4:406-14. 2008
    ..Therefore, our review provides a standardized QTL map anchored within the current genome assembly, which would enhance the process of selecting positional and physiological candidate genes for many important traits in cattle...
  9. pmc The genetic basis of smoltification-related traits in Oncorhynchus mykiss
    Krista M Nichols
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164, USA
    Genetics 179:1559-75. 2008
    ..Dissecting the genetic architecture of this highly complex trait has profound implications for understanding the genetic and evolutionary basis of life-history diversity within and among migratory fishes...
  10. doi request reprint Y chromosome phylogeny for cutthroat trout (Oncorhynchus clarkii) subspecies is generally concordant with those of other markers
    JOSEPH P BRUNELLI
    School of Biological Sciences, Washington State University, Pullman, WA 99164 4236, United States
    Mol Phylogenet Evol 66:592-602. 2013
    ..Identification of subspecies and sex with this Y-chromosome marker may prove useful in conservation efforts...
  11. ncbi request reprint Polymorphism and differentiation of rainbow trout Y chromosomes
    Alicia Felip
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164, USA
    Genome 47:1105-13. 2004
    ..Fishes appear to be an excellent group of organisms for studying sex chromosome evolution and differentiation in vertebrates because they show considerable variability in the mechanisms and (or) patterns involved in sex determination...
  12. pmc Quantitative trait loci x maternal cytoplasmic environment interaction for development rate in Oncorhynchus mykiss
    Krista M Nichols
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164 4236, USA
    Genetics 175:335-47. 2007
    ..Both MCE and QTL x MCE effects contribute to variability in development rate, but QTL x MCE were minor and detected only at small-effect QTL...
  13. pmc Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss)
    Mahmoud A Alfaqih
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
    BMC Genet 10:2. 2009
    ..Orthologous sequences of the major genes of the mammalian sex determination pathway have been reported in the rainbow trout but the map position for the majority of these genes has not been assigned...
  14. pmc Deep divergence and apparent sex-biased dispersal revealed by a Y-linked marker in rainbow trout
    JOSEPH P BRUNELLI
    School of Biological Sciences, Washington State University, Pullman, WA 99164 4236, USA
    Mol Phylogenet Evol 56:983-90. 2010
    ..This new Y marker may also aid conservation efforts by genetically identifying inland populations that have not hybridized with widely stocked coastal-derived hatchery fish...
  15. doi request reprint Y-specific sequences and polymorphisms in rainbow trout and Chinook salmon
    JOSEPH P BRUNELLI
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
    Genome 51:739-48. 2008
    ....
  16. pmc Characterization of the OmyY1 Region on the Rainbow Trout Y Chromosome
    Ruth B Phillips
    School of Biological Sciences, Washington State University Vancouver, 14204 NE, Salmon Creek Avenue, Vancouver, WA 98686 9600, USA Center for Reproductive Biology, Washington State University, Pullman, WA 99164 7520, USA
    Int J Genomics 2013:261730. 2013
    ..By BLASTn evaluations using hypothetical transcripts of OmyY1-linked candidate genes as query against several EST databases, we conclude at least 12 of these candidate genes are likely functional, and expressed...
  17. ncbi request reprint A single major chromosomal region controls natural killer cell-like activity in rainbow trout
    Anastasia M Zimmerman
    Department of Animal Sciences, Washington State University, Pullman, WA 99164 6332, USA
    Immunogenetics 55:825-35. 2004
    ....
  18. doi request reprint Oxidative stress among SOD-1 genotypes in rainbow trout (Oncorhynchus mykiss)
    Anna E Heink
    School of Biological Sciences, Washington State University, Pullman, WA 99164 4236, USA Electronic address
    Aquat Toxicol 144:75-82. 2013
    ....
  19. ncbi request reprint Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I region
    Ruth B Phillips
    School of Biological Sciences, Washington State University, 14204 N E Salmon Creek Ave, Vancouver, WA 98686 9600, USA
    Immunogenetics 55:561-9. 2003
    ..Our data demonstrate that the trout MH regions are located on at least four different chromosomes and the corresponding linkage groups, while also providing direct evidence for the partial duplication of the MH class I region in trout...
  20. pmc A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
    Michael R Miller
    Institute of Molecular Biology and Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
    Mol Ecol 21:237-49. 2012
    ..The repeated use of adaptive genetic variation across distant geographical areas could be a general theme in salmonids and have important implications for conservation and restoration...
  21. ncbi request reprint A simplified QTL mapping approach for screening and mapping of novel AFLP markers associated with beef marbling
    Qianjun Xiao
    Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
    J Biotechnol 127:177-87. 2007
    ..54+/-0.21 on BTA13) on beef-marbling score (BMS) (P<0.05). Overall, this approach is less time consuming, inexpensive and in particular, suitable for screening and mapping QTL-linked markers when targeting one or a few complex traits...
  22. ncbi request reprint Comparative genome mapping reveals evidence of gene conversion between Sox9 paralogs of rainbow trout (Oncorhynchus mykiss)
    Mahmoud A Alfaqih
    School of Molecular Biosciences, Washington State University, Pullman, WA 99164 4234 USA Department of Pharmacology and Physiology, Mutah University, Karak, 61710, Jordan
    Comp Biochem Physiol Part D Genomics Proteomics 4:147-53. 2009
    ..The conflicting phylogenetic topology of Sox9 genes in rainbow trout indicates the occurrence of gene conversion events between Sox9 and Sox9?2 which is supported by a number of recombination analyses...
  23. doi request reprint Heat shock protein (HSP70) RNA expression differs among rainbow trout (Oncorhynchus mykiss) clonal lines
    Pilar Heredia-Middleton
    School of Earth and Environmental Sciences, Washington State University, Pullman, WA 99164 2812, USA
    Comp Biochem Physiol B Biochem Mol Biol 149:552-6. 2008
    ..The discovery of variation in HSP70 expression among the clonal lines indicates that future studies to map the genetic control of HSP70 expression differences are possible...
  24. ncbi request reprint Mapping multiple genetic loci associated with Ceratomyxa shasta resistance in Oncorhynchus mykiss
    Krista M Nichols
    School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164 4236, USA
    Dis Aquat Organ 56:145-54. 2003
    ..We found multiple genomic loci associated with C. shasta resistance through these models, confirming studies by previous investigators that suggested C. shasta resistance is polygenic...
  25. doi request reprint Universal mtDNA primers for species identification of degraded bony fish samples
    Leah G Jordan
    School of Molecular Biosciences, Washington State University, Pullman, WA 99164 4234, USA School of Biological Sciences and Center for Reproductive Biology, Washington State, University, Pullman, WA 99164 4236, USA
    Mol Ecol Resour 10:225-8. 2010
    ..Based on alignments of additional deposited sequences, these primers are conserved in many other species, making them useful for species identification using degraded DNA samples such as archaeological specimens...
  26. ncbi request reprint Molecular cloning and genomic structure of an interleukin-8 receptor-like gene from homozygous clones of rainbow trout (Oncorhynchus mykiss)
    Hui Zhang
    Department of Animal Sciences, Washington State University, Pullman 99164 6351, USA
    Fish Shellfish Immunol 13:251-8. 2002
    ..This paper reports the molecular cloning and genomic structure of an IL-8 receptor-like gene from four homozygous clones of rainbow trout: Oregon State University (OSU), Hot Creek (HC), Arlee (AR) and Swanson (SW)...
  27. ncbi request reprint Behavioral differences among rainbow trout clonal lines
    Megan D Lucas
    School of Biological Sciences, Washington State University, Pullman, Washington, USA
    Behav Genet 34:355-65. 2004
    ..These results will facilitate future investigation of the genetic factors underlying population variation in these behavior patterns influenced by domestication...
  28. ncbi request reprint Cloning novel immune-type inhibitory receptors from the rainbow trout, Oncorhynchus mykiss
    Jeffrey A Yoder
    Immunology Program, H Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, FL 33612, USA
    Immunogenetics 54:662-70. 2002
    ..Several probable scenarios that explain the origins of variant forms of NITRs are described...
  29. doi request reprint Transcriptional profiling of MHC class I genes in rainbow trout infected with infectious hematopoietic necrosis virus
    Eric D Landis
    Molecular Medicine, University of Maryland Medical School, Baltimore, MD, USA
    Mol Immunol 45:1646-57. 2008
    ..Our results support a non-classical designation for the majority of the class IB genes surveyed in this study based upon expression levels while also indicating that they may play an important role in anti-viral immunity in trout...
  30. ncbi request reprint Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virus
    Maureen K Purcell
    School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98195, USA
    Mol Immunol 43:2089-106. 2006
    ..The results presented here suggest that the IHNV DNA vaccine induces up-regulation of the type I IFN system across multiple tissues, which is the functional basis of early anti-viral immunity...