Research Topics
Genomes and GenesSpecies | Gary H ThorgaardSummaryAffiliation: Washington State University Country: USA Publications
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Detail Information
Publications
Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonadsMatthew C Hale
Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA
BMC Genomics 12:404. 2011..Here we use data from a microarray and qRT-PCR to identify genes differentially expressed between the sexes at three time points in pre-hatch embryos, prior to the known timing of sexual differentiation in this species...- Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approachesMohamed Salem
Laboratory of Animal Biotechnology and Genomics, Division of Animal and Nutritional Sciences, West Virginia University, Morgantown, WV 26506, USA
BMC Genomics 11:564. 2010..Although a large number (258,973) of EST sequences are publicly available, the nature of rainbow trout duplicated genome hinders assembly and complicates annotation... - A first generation BAC-based physical map of the rainbow trout genomeYniv Palti
National Center for Cool and Cold Water Aquaculture, ARS USDA, Kearneysville, WV 25430, USA
BMC Genomics 10:462. 2009..This resource will also facilitate efforts to obtain and assemble a whole-genome reference sequence for this species... 
Status and opportunities for genomics research with rainbow troutGary H Thorgaard
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
Comp Biochem Physiol B Biochem Mol Biol 133:609-46. 2002..The development and analysis of additional genomic sequence data will provide distinctive opportunities to address problems in areas such as evolution of the immune system and duplicate genes...- Assignment of rainbow trout linkage groups to specific chromosomesRuth B Phillips
Department of Biological Sciences, Washington State University, Vancouver, Washington 98686 9600, USA
Genetics 174:1661-70. 2006..The set of BACs compiled for this research will be especially useful in construction of genome maps and identification of QTL for important traits in other salmonid fishes... - A novel nuclear-encoded mitochondrial poly(A) polymerase PAPD1 is a potential candidate gene for the extreme obesity related phenotypes in mammalsQianjun Xiao
Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
Int J Biol Sci 2:171-8. 2006..3 standard deviations for the trait in both cases. Our study provides evidence for a new mechanism--the involvement of compound heterosis in extreme obesity, which warrants further examination... - The genetic basis of smoltification-related traits in Oncorhynchus mykissKrista M Nichols
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164, USA
Genetics 179:1559-75. 2008..Dissecting the genetic architecture of this highly complex trait has profound implications for understanding the genetic and evolutionary basis of life-history diversity within and among migratory fishes... - Genome assembly anchored QTL map of bovine chromosome 14Tito A Wibowo
Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
Int J Biol Sci 4:406-14. 2008..Therefore, our review provides a standardized QTL map anchored within the current genome assembly, which would enhance the process of selecting positional and physiological candidate genes for many important traits in cattle... - Quantitative trait loci x maternal cytoplasmic environment interaction for development rate in Oncorhynchus mykissKrista M Nichols
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164 4236, USA
Genetics 175:335-47. 2007..Both MCE and QTL x MCE effects contribute to variability in development rate, but QTL x MCE were minor and detected only at small-effect QTL... - Polymorphism and differentiation of rainbow trout Y chromosomesAlicia Felip
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164, USA
Genome 47:1105-13. 2004..Fishes appear to be an excellent group of organisms for studying sex chromosome evolution and differentiation in vertebrates because they show considerable variability in the mechanisms and (or) patterns involved in sex determination... - Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss)Mahmoud A Alfaqih
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
BMC Genet 10:2. 2009..Orthologous sequences of the major genes of the mammalian sex determination pathway have been reported in the rainbow trout but the map position for the majority of these genes has not been assigned... - Deep divergence and apparent sex-biased dispersal revealed by a Y-linked marker in rainbow troutJOSEPH P BRUNELLI
School of Biological Sciences, Washington State University, Pullman, WA 99164 4236, USA
Mol Phylogenet Evol 56:983-90. 2010..This new Y marker may also aid conservation efforts by genetically identifying inland populations that have not hybridized with widely stocked coastal-derived hatchery fish... 
Y-specific sequences and polymorphisms in rainbow trout and Chinook salmonJOSEPH P BRUNELLI
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, WA 99164 4236, USA
Genome 51:739-48. 2008....- A single major chromosomal region controls natural killer cell-like activity in rainbow troutAnastasia M Zimmerman
Department of Animal Sciences, Washington State University, Pullman, WA 99164-6332, USA
Immunogenetics 55:825-35. 2004.... - A conserved haplotype controls parallel adaptation in geographically distant salmonid populationsMichael R Miller
Institute of Molecular Biology and Howard Hughes Medical Institute, University of Oregon, Eugene, OR 97403, USA
Mol Ecol 21:237-49. 2012..The repeated use of adaptive genetic variation across distant geographical areas could be a general theme in salmonids and have important implications for conservation and restoration... - A simplified QTL mapping approach for screening and mapping of novel AFLP markers associated with beef marblingQianjun Xiao
Department of Animal Sciences, Washington State University, Pullman, WA 99164 6351, USA
J Biotechnol 127:177-87. 2007..54+/-0.21 on BTA13) on beef-marbling score (BMS) (P<0.05). Overall, this approach is less time consuming, inexpensive and in particular, suitable for screening and mapping QTL-linked markers when targeting one or a few complex traits... - Physical and genetic mapping of the rainbow trout major histocompatibility regions: evidence for duplication of the class I regionRuth B Phillips
School of Biological Sciences, Washington State University, 14204 N.E. Salmon Creek Ave, Vancouver, WA 98686-9600, USA
Immunogenetics 55:561-9. 2003..Our data demonstrate that the trout MH regions are located on at least four different chromosomes and the corresponding linkage groups, while also providing direct evidence for the partial duplication of the MH class I region in trout... - Heat shock protein (HSP70) RNA expression differs among rainbow trout (Oncorhynchus mykiss) clonal linesPilar Heredia-Middleton
School of Earth and Environmental Sciences, Washington State University, Pullman, WA 99164 2812, USA
Comp Biochem Physiol B Biochem Mol Biol 149:552-6. 2008..The discovery of variation in HSP70 expression among the clonal lines indicates that future studies to map the genetic control of HSP70 expression differences are possible... - Mapping multiple genetic loci associated with Ceratomyxa shasta resistance in Oncorhynchus mykissKrista M Nichols
School of Biological Sciences and Center for Reproductive Biology, Washington State University, Pullman, Washington 99164 4236, USA
Dis Aquat Organ 56:145-54. 2003..We found multiple genomic loci associated with C. shasta resistance through these models, confirming studies by previous investigators that suggested C. shasta resistance is polygenic... - Comparative genome mapping reveals evidence of gene conversion between Sox9 paralogs of rainbow trout (Oncorhynchus mykiss)Mahmoud A Alfaqih
School of Molecular Biosciences, Washington State University, Pullman, WA 99164 4234 USA Department of Pharmacology and Physiology, Mutah University, Karak, 61710, Jordan
Comp Biochem Physiol Part D Genomics Proteomics 4:147-53. 2009..The conflicting phylogenetic topology of Sox9 genes in rainbow trout indicates the occurrence of gene conversion events between Sox9 and Sox9?2 which is supported by a number of recombination analyses... - Universal mtDNA primers for species identification of degraded bony fish samplesLeah G Jordan
School of Molecular Biosciences, Washington State University, Pullman, WA 99164 4234, USA School of Biological Sciences and Center for Reproductive Biology, Washington State, University, Pullman, WA 99164 4236, USA
Mol Ecol Resour 10:225-8. 2010..Based on alignments of additional deposited sequences, these primers are conserved in many other species, making them useful for species identification using degraded DNA samples such as archaeological specimens... - Molecular cloning and genomic structure of an interleukin-8 receptor-like gene from homozygous clones of rainbow trout (Oncorhynchus mykiss)Hui Zhang
Department of Animal Sciences, Washington State University, Pullman 99164 6351, USA
Fish Shellfish Immunol 13:251-8. 2002..This paper reports the molecular cloning and genomic structure of an IL-8 receptor-like gene from four homozygous clones of rainbow trout: Oregon State University (OSU), Hot Creek (HC), Arlee (AR) and Swanson (SW)... - Behavioral differences among rainbow trout clonal linesMegan D Lucas
School of Biological Sciences, Washington State University, Pullman, Washington, USA
Behav Genet 34:355-65. 2004..These results will facilitate future investigation of the genetic factors underlying population variation in these behavior patterns influenced by domestication... - Comprehensive gene expression profiling following DNA vaccination of rainbow trout against infectious hematopoietic necrosis virusMaureen K Purcell
School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98195, USA
Mol Immunol 43:2089-106. 2006..The results presented here suggest that the IHNV DNA vaccine induces up-regulation of the type I IFN system across multiple tissues, which is the functional basis of early anti-viral immunity... - Cloning novel immune-type inhibitory receptors from the rainbow trout, Oncorhynchus mykissJeffrey A Yoder
Immunology Program, H Lee Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, FL 33612, USA
Immunogenetics 54:662-70. 2002..Several probable scenarios that explain the origins of variant forms of NITRs are described... - Transcriptional profiling of MHC class I genes in rainbow trout infected with infectious hematopoietic necrosis virusEric D Landis
Molecular Medicine, University of Maryland Medical School, Baltimore, MD, USA
Mol Immunol 45:1646-57. 2008..Our results support a non-classical designation for the majority of the class IB genes surveyed in this study based upon expression levels while also indicating that they may play an important role in anti-viral immunity in trout...