J D McPherson

Summary

Affiliation: Washington University School of Medicine
Country: USA

Publications

  1. ncbi request reprint A radiation hybrid map of human chromosome 5 with integration of cytogenetic, genetic, and transcript maps
    J D McPherson
    Department of Biological Chemistry, University of California at Irvine, 92717, USA
    Genome Res 7:897-909. 1997
  2. ncbi request reprint A physical map of the human genome
    J D McPherson
    Washington University School of Medicine, Genome Sequencing Center, Department of Genetics, St Louis, Missouri 63108, USA
    Nature 409:934-41. 2001
  3. ncbi request reprint MethylScreen: DNA methylation density monitoring using quantitative PCR
    H Holemon
    Orion Genomics, LLC, St Louis, MO, USA
    Biotechniques 43:683-93. 2007
  4. pmc High throughput fingerprint analysis of large-insert clones
    M A Marra
    Washington University School of Medicine, Genome Sequencing Center, St Louis, Missouri 63108, USA
    Genome Res 7:1072-84. 1997
  5. ncbi request reprint A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy
    Jeremy J Gibson-Brown
    Department of Biology, Washington University, St Louis, Missouri 63130, USA
    J Exp Zool B Mol Dev Evol 300:5-22. 2003
  6. ncbi request reprint Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
    J M Ordway
    Orion Genomics, St Louis, MO 63108, USA
    Carcinogenesis 27:2409-23. 2006
  7. pmc The syntenic relationship of the zebrafish and human genomes
    W B Barbazuk
    Washington University School of Medicine Genome Sequencing Center, St Louis, Missouri 63108, USA
    Genome Res 10:1351-8. 2000
  8. ncbi request reprint Initial sequencing and comparative analysis of the mouse genome
    Robert H Waterston
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 420:520-62. 2002
  9. ncbi request reprint The DNA sequence of human chromosome 7
    Ladeana W Hillier
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 424:157-64. 2003
  10. ncbi request reprint A physical map of the chicken genome
    John W Wallis
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 432:761-4. 2004

Detail Information

Publications17

  1. ncbi request reprint A radiation hybrid map of human chromosome 5 with integration of cytogenetic, genetic, and transcript maps
    J D McPherson
    Department of Biological Chemistry, University of California at Irvine, 92717, USA
    Genome Res 7:897-909. 1997
    ..Together, these maps will assist in the assembly of sequence-ready contigs and will aid in the identification of disease loci on chromosome 5 by positional cloning and positional candidate approaches...
  2. ncbi request reprint A physical map of the human genome
    J D McPherson
    Washington University School of Medicine, Genome Sequencing Center, Department of Genetics, St Louis, Missouri 63108, USA
    Nature 409:934-41. 2001
    ..We also describe the integration of sequence data with the map...
  3. ncbi request reprint MethylScreen: DNA methylation density monitoring using quantitative PCR
    H Holemon
    Orion Genomics, LLC, St Louis, MO, USA
    Biotechniques 43:683-93. 2007
    ..Interestingly, the interpreted output from the four quantitative PCRs closely resembled the molecular population as described by clone-based bisulfite genomic sequencing...
  4. pmc High throughput fingerprint analysis of large-insert clones
    M A Marra
    Washington University School of Medicine, Genome Sequencing Center, St Louis, Missouri 63108, USA
    Genome Res 7:1072-84. 1997
    ..We anticipate that the high throughput and precision characteristic of our fingerprinting method will make it of general utility...
  5. ncbi request reprint A proposal to sequence the amphioxus genome submitted to the Joint Genome Institute of the US Department of Energy
    Jeremy J Gibson-Brown
    Department of Biology, Washington University, St Louis, Missouri 63130, USA
    J Exp Zool B Mol Dev Evol 300:5-22. 2003
  6. ncbi request reprint Comprehensive DNA methylation profiling in a human cancer genome identifies novel epigenetic targets
    J M Ordway
    Orion Genomics, St Louis, MO 63108, USA
    Carcinogenesis 27:2409-23. 2006
    ..Uniquely, hypermethylation of the CGI within an IRX3 exon was correlated with over-expression of IRX3 in tumor tissues and cell lines relative to normal brain samples...
  7. pmc The syntenic relationship of the zebrafish and human genomes
    W B Barbazuk
    Washington University School of Medicine Genome Sequencing Center, St Louis, Missouri 63108, USA
    Genome Res 10:1351-8. 2000
    ..This work now provides a syntenic relationship to the human genome for the majority of the zebrafish genome...
  8. ncbi request reprint Initial sequencing and comparative analysis of the mouse genome
    Robert H Waterston
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 420:520-62. 2002
    ....
  9. ncbi request reprint The DNA sequence of human chromosome 7
    Ladeana W Hillier
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 424:157-64. 2003
    ..Of genes confirmed by transcript sequences, some are polymorphic for mutations that disrupt the reading frame...
  10. ncbi request reprint A physical map of the chicken genome
    John W Wallis
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 432:761-4. 2004
    ..This map represents approximately 91% of the chicken genome and enables identification of chicken clones aligned to positions in other sequenced genomes...
  11. ncbi request reprint Generation and annotation of the DNA sequences of human chromosomes 2 and 4
    Ladeana W Hillier
    Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA
    Nature 434:724-31. 2005
    ..Extensive analyses confirm the underlying construction of the sequence, and expand our understanding of the structure and evolution of mammalian chromosomes, including gene deserts, segmental duplications and highly variant regions...
  12. pmc Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA
    Yulia Korshunova
    Orion Genomics, LLC, St Louis, Missouri 63108, USA
    Genome Res 18:19-29. 2008
    ..Importantly, by establishing the methylation landscape within circulating DNA, this study has better defined the development challenges facing DNA methylation-based cancer-detection tests...
  13. ncbi request reprint Large-scale RT-PCR recovery of full-length cDNA clones
    Jia Qian Wu
    Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA
    Biotechniques 36:690-6, 698-700. 2004
    ..This systematic gene recovery pipeline allows both rescue of predicted human and rat genes and provides insight into the complexity of the transcriptome through comparisons with existing data sets...
  14. pmc Punctuated duplication seeding events during the evolution of human chromosome 2p11
    Julie E Horvath
    Department of Genetics and Center for Human Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA
    Genome Res 15:914-27. 2005
    ..The data further indicate that factors other than sequence are important determinants for such bursts of duplicative transposition from the euchromatin to pericentromeric regions...
  15. ncbi request reprint A physical map of the mouse genome
    Simon G Gregory
    The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK
    Nature 418:743-50. 2002
    ..The human sequence may be used to facilitate construction of other mammalian genome maps using the same strategy...
  16. pmc Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome
    Martin Krzywinski
    Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, Canada V5Z 4E6
    Genome Res 14:766-79. 2004
    ..The fingerprint map is a high-resolution integrative data resource that provides genome-ordered associations among BAC, YAC, and PAC clones and the assembled sequence of the rat genome...