James P McCarter

Summary

Affiliation: Washington University School of Medicine
Country: USA

Publications

  1. pmc Analysis and functional classification of transcripts from the nematode Meloidogyne incognita
    James P McCarter
    Genome Sequencing Center, Department of Genetics, Box 8501, Washington University School of Medicine, St, Louis, MO 63108, USA
    Genome Biol 4:R26. 2003
  2. pmc Sequence mining and transcript profiling to explore cyst nematode parasitism
    Axel A Elling
    Interdepartmental Genetics Program, Iowa State University, Ames, IA 50011, USA
    BMC Genomics 10:58. 2009
  3. ncbi request reprint Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages
    Makedonka Mitreva
    Department of Genetics, Genome Sequencing Center, Washington University School of Medicine, Box 8501, 4444 Forest Park Boulevard, St Louis, MO 63108, USA
    Mol Biochem Parasitol 137:277-91. 2004
  4. pmc Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans
    Makedonka Mitreva
    Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63108, USA
    Genome Res 14:209-20. 2004
  5. pmc Molecular determinants archetypical to the phylum Nematoda
    Yong Yin
    The Genome Center, Department of Genetics, Washington University School of Medicine, St Louis, Missouri, USA
    BMC Genomics 10:114. 2009
  6. pmc Investigating hookworm genomes by comparative analysis of two Ancylostoma species
    Makedonka Mitreva
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, USA
    BMC Genomics 6:58. 2005
  7. pmc NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
    Todd Wylie
    The Genome Center at Washington University School of Medicine, St, Louis, MO 63108, USA
    BMC Genomics 9:525. 2008
  8. pmc The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi
    Sahar Abubucker
    The Genome Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, United States
    Vet Parasitol 162:89-99. 2009
  9. pmc Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans
    Yong Yin
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, St Louis, Missouri, United States of America
    PLoS Negl Trop Dis 2:e269. 2008
  10. pmc The draft genome of the parasitic nematode Trichinella spiralis
    Makedonka Mitreva
    The Genome Center, Washington University School of Medicine, St Louis, Missouri, USA
    Nat Genet 43:228-35. 2011

Collaborators

Detail Information

Publications17

  1. pmc Analysis and functional classification of transcripts from the nematode Meloidogyne incognita
    James P McCarter
    Genome Sequencing Center, Department of Genetics, Box 8501, Washington University School of Medicine, St, Louis, MO 63108, USA
    Genome Biol 4:R26. 2003
    ..As an entrée to characterizing plant parasitic nematode genomes, we analyzed 5,700 expressed sequence tags (ESTs) from second-stage larvae (L2) of the root-knot nematode Meloidogyne incognita...
  2. pmc Sequence mining and transcript profiling to explore cyst nematode parasitism
    Axel A Elling
    Interdepartmental Genetics Program, Iowa State University, Ames, IA 50011, USA
    BMC Genomics 10:58. 2009
    ..These proteins are the translation products of parasitism genes and are secreted molecular tools that allow cyst nematodes to infect plants...
  3. ncbi request reprint Gene discovery in the adenophorean nematode Trichinella spiralis: an analysis of transcription from three life cycle stages
    Makedonka Mitreva
    Department of Genetics, Genome Sequencing Center, Washington University School of Medicine, Box 8501, 4444 Forest Park Boulevard, St Louis, MO 63108, USA
    Mol Biochem Parasitol 137:277-91. 2004
    ..The genes discovered, when put into context of functional classification, stage of expression, and biology of the parasite, should substantially enhance experimental potential for research on this parasite...
  4. pmc Comparative genomics of gene expression in the parasitic and free-living nematodes Strongyloides stercoralis and Caenorhabditis elegans
    Makedonka Mitreva
    Department of Genetics, Washington University School of Medicine, St Louis, Missouri 63108, USA
    Genome Res 14:209-20. 2004
    ..We also provide functional classifications of S. stercoralis clusters...
  5. pmc Molecular determinants archetypical to the phylum Nematoda
    Yong Yin
    The Genome Center, Department of Genetics, Washington University School of Medicine, St Louis, Missouri, USA
    BMC Genomics 10:114. 2009
    ..Most nematodes are free-living animals, but many are parasites of plants and animals including humans, posing major ecological and economical challenges around the world...
  6. pmc Investigating hookworm genomes by comparative analysis of two Ancylostoma species
    Makedonka Mitreva
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, USA
    BMC Genomics 6:58. 2005
    ..Applying genomics techniques to these species, we analyzed 3,840 and 3,149 genes from Ancylostoma caninum and A. ceylanicum...
  7. pmc NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
    Todd Wylie
    The Genome Center at Washington University School of Medicine, St, Louis, MO 63108, USA
    BMC Genomics 9:525. 2008
    ..Swiss-Prot, in turn, relies on GenBank/Embl/DDJP for predicted proteins from complete genomes or full-length proteins...
  8. pmc The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi
    Sahar Abubucker
    The Genome Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, United States
    Vet Parasitol 162:89-99. 2009
    ..The identified transcripts are a valuable resource for genomic studies of O. ostertagi and can facilitate the design of control strategies and vaccine programs...
  9. pmc Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans
    Yong Yin
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, St Louis, Missouri, United States of America
    PLoS Negl Trop Dis 2:e269. 2008
    ..However, the lack of detailed knowledge on the molecular and cellular functions of the intestine and the level of its conservation across nematodes has impeded breakthroughs in this application...
  10. pmc The draft genome of the parasitic nematode Trichinella spiralis
    Makedonka Mitreva
    The Genome Center, Washington University School of Medicine, St Louis, Missouri, USA
    Nat Genet 43:228-35. 2011
    ..This genome sequence and the identified pan-phylum characteristics will contribute to genome evolution studies of Nematoda as well as strategies to combat global parasites of humans, food animals and crops...
  11. ncbi request reprint Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis
    Yong Yin
    Department of Genetics, Genome Sequencing Center, Washington University School of Medicine, Box 8501, St Louis, MO 63108, USA
    Int J Parasitol 36:829-39. 2006
    ..Our survey provided novel insights into the D. immitis transcriptome and laid a foundation for further comparative studies on biology, parasitism and evolution within the phylum Nematoda...
  12. pmc The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences
    Sahar Abubucker
    Department of Genetics, Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA
    Mol Biochem Parasitol 157:187-92. 2008
    ..Functional classifications of many of the 70% of genes with homology to genes in other species are provided based on gene ontology and KEGG associations and secreted and membrane-bound proteins are also identified...
  13. ncbi request reprint Comparative genomics of nematodes
    Makedonka Mitreva
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, USA
    Trends Genet 21:573-81. 2005
    ..This unique resource will underpin both molecular understanding of these most abundant metazoan organisms and aid in the examination of the dynamics of genome evolution in animals...
  14. ncbi request reprint Brugia malayi: effects of radiation and culture on gene expression in infective larvae
    Ben Wen Li
    Infectious Diseases Division, Campus Box 8051, Washington University School of Medicine, 660 S Euclid Avenue, St Louis, MO 63110, USA
    Mol Biochem Parasitol 149:201-7. 2006
    ..This study provides an improved description of the adaptations that accompany the transition from L3i to L3c and the special ability of L3ir to induce protective immunity...
  15. ncbi request reprint Expressed sequence tags from life cycle stages of Trichinella spiralis: application to biology and parasite control
    Makedonka Mitreva
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St Louis, MO 63108, USA
    Vet Parasitol 132:13-7. 2005
    ..The foundation laid by this data will also contribute toward development of a more substantial genomic database and technical capacity to dissect molecular interactions between vertebrate hosts and Trichinella spp...
  16. ncbi request reprint Parasitic nematodes - from genomes to control
    Makedonka Mitreva
    Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St Louis, MO 63108, USA
    Vet Parasitol 148:31-42. 2007
    ..Genomics approaches offer a growing and fundamental base of information, which when coupled with downstream functional genomics and proteomics can accelerate progress towards developing more efficient and sustainable control programs...
  17. pmc Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes
    Todd Wylie
    The Genome Sequencing Center, Washington University School of Medicine, St Louis, MO 63108, USA
    Nucleic Acids Res 32:D423-6. 2004
    ..The long-term goal of nematode.net is to provide the scientific community with the highest quality sequence information and tools for studying these diverse species...