Sook Jung

Summary

Affiliation: Washington State University
Country: USA

Publications

  1. pmc The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data
    Sook Jung
    Department of Horticulture and Landscape, Washington State University, Pullman, WA 99164, USA
    Database (Oxford) 2011:bar051. 2011
  2. pmc Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Genomics 13:129. 2012
  3. pmc The Genome Database for Rosaceae (GDR): year 10 update
    Sook Jung
    Department of Horticulture, Washington State University, Pullman, WA 99164 6414, USA, Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA, Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA, Department of Computer Science, Saginaw Valley State University, University Center, MI 48710, USA and Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA
    Nucleic Acids Res 42:D1237-44. 2014
  4. pmc CottonGen: a genomics, genetics and breeding database for cotton research
    Jing Yu
    Department of Horticulture, Washington State University, Pullman, WA 99164 6414, USA, Cotton Incorporated, Cary, NC 27513, USA and Crop Germplasm Research Unit, USDA ARS SPARC, College Station, TX 77845, USA
    Nucleic Acids Res 42:D1229-36. 2014
  5. pmc Synteny of Prunus and other model plant species
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Genomics 10:76. 2009
  6. pmc Addition of a breeding database in the Genome Database for Rosaceae
    Kate Evans
    Washington State University Tree Fruit Research and Extension Center, 1100 N Western Ave, Wenatchee, WA 98801 Department of Horticulture, Washington State University, Johnson Hall, Pullman WA 99164 and Department of Computer Science, Saginaw Valley State University, University Center, MI 48710, USA
    Database (Oxford) 2013:bat078. 2013
  7. pmc Tripal: a construction toolkit for online genome databases
    Stephen P Ficklin
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    Database (Oxford) 2011:bar044. 2011
  8. pmc GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164 6414, USA
    Nucleic Acids Res 36:D1034-40. 2008
  9. pmc Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Res Notes 3:168. 2010

Collaborators

Detail Information

Publications10

  1. pmc The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data
    Sook Jung
    Department of Horticulture and Landscape, Washington State University, Pullman, WA 99164, USA
    Database (Oxford) 2011:bar051. 2011
    ..We describe details of the Natural Diversity module, including the design approach, the relational schema and use cases implemented in several databases...
  2. pmc Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Genomics 13:129. 2012
    ..Recently the whole genome of three crop species, peach, apple and strawberry, which belong to different genera of the Rosaceae family, have been sequenced, allowing in-depth comparison of these genomes...
  3. pmc The Genome Database for Rosaceae (GDR): year 10 update
    Sook Jung
    Department of Horticulture, Washington State University, Pullman, WA 99164 6414, USA, Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA, Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA, Department of Computer Science, Saginaw Valley State University, University Center, MI 48710, USA and Horticultural Sciences Department, University of Florida, Gainesville, FL 32611, USA
    Nucleic Acids Res 42:D1237-44. 2014
    ..Improved search pages are available for marker, trait locus, genetic diversity and publication data. New search tools for breeders enable selection comparison and assistance with breeding decision making. ..
  4. pmc CottonGen: a genomics, genetics and breeding database for cotton research
    Jing Yu
    Department of Horticulture, Washington State University, Pullman, WA 99164 6414, USA, Cotton Incorporated, Cary, NC 27513, USA and Crop Germplasm Research Unit, USDA ARS SPARC, College Station, TX 77845, USA
    Nucleic Acids Res 42:D1229-36. 2014
    ..Search tools also exist for markers, quantitative trait loci (QTLs), germplasm, publications and trait evaluation data. CottonGen also provides online analysis tools such as NCBI BLAST and Batch BLAST. ..
  5. pmc Synteny of Prunus and other model plant species
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Genomics 10:76. 2009
    ..Eight Prunus BAC sequences and map-anchored Prunus sequences were used in the comparison...
  6. pmc Addition of a breeding database in the Genome Database for Rosaceae
    Kate Evans
    Washington State University Tree Fruit Research and Extension Center, 1100 N Western Ave, Wenatchee, WA 98801 Department of Horticulture, Washington State University, Johnson Hall, Pullman WA 99164 and Department of Computer Science, Saginaw Valley State University, University Center, MI 48710, USA
    Database (Oxford) 2013:bat078. 2013
    ..Database URL: http://www.rosaceae.org/breeders_toolbox. ..
  7. pmc Tripal: a construction toolkit for online genome databases
    Stephen P Ficklin
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    Database (Oxford) 2011:bar044. 2011
    ..Addition of non-biological content and user-management is afforded through Drupal. Tripal is an open source and freely available software package found at http://tripal.sourceforge.net...
  8. pmc GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164 6414, USA
    Nucleic Acids Res 36:D1034-40. 2008
    ..GDR also provides online analysis tools such as a batch BLAST/FASTA server for the GDR datasets, a sequence assembly server and microsatellite and primer detection tools. GDR is available at http://www.rosaceae.org...
  9. pmc Comparative genomic sequence analysis of strawberry and other rosids reveals significant microsynteny
    Sook Jung
    Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA
    BMC Res Notes 3:168. 2010
    ..Using genomic sequences from 50 Fragaria fosmids, we have examined the microsynteny between Fragaria and other plant models...